Wall clock time and date at job start Tue Mar 31 2020 12:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36710 * 126.68697 * 2 1 4 4 C 1.46850 * 125.75690 * 359.97438 * 3 2 1 5 5 O 1.21677 * 119.99704 * 335.99304 * 4 3 2 6 6 N 1.34772 * 120.00158 * 155.99476 * 4 3 2 7 7 C 1.46498 * 119.99988 * 5.30079 * 6 4 3 8 8 C 1.46497 * 119.99865 * 185.29654 * 6 4 3 9 9 C 1.50700 * 109.47257 * 90.00279 * 8 6 4 10 10 H 1.08006 * 119.99525 * 359.97438 * 9 8 6 11 11 C 1.37872 * 120.00293 * 179.97438 * 9 8 6 12 12 N 1.31514 * 120.00218 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 120.00056 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46907 * 89.99906 * 13 11 9 15 15 H 1.48498 * 109.47006 * 210.00075 * 13 11 9 16 16 H 1.48501 * 109.46942 * 329.99818 * 13 11 9 17 17 N 1.38185 * 108.48544 * 179.97438 * 3 2 1 18 18 H 0.97006 * 125.34464 * 179.91433 * 17 3 2 19 19 C 1.33315 * 109.30735 * 359.93383 * 17 3 2 20 20 C 1.39486 * 107.91130 * 0.14282 * 19 17 3 21 21 C 1.47094 * 121.62959 * 179.79742 * 20 19 17 22 22 O 1.21331 * 122.44148 * 168.80231 * 21 20 19 23 23 C 1.52136 * 115.11667 * 348.53547 * 21 20 19 24 24 C 1.53189 * 108.42388 * 42.72967 * 23 21 20 25 25 C 1.52996 * 109.22958 * 55.36202 * 24 23 21 26 26 C 1.53002 * 109.23015 * 174.77419 * 24 23 21 27 27 C 1.50769 * 129.22135 * 180.16095 * 19 17 3 28 28 H 1.08998 * 109.47274 * 270.03923 * 1 2 3 29 29 H 1.08997 * 109.46983 * 30.03670 * 1 2 3 30 30 H 1.09000 * 109.46905 * 150.03575 * 1 2 3 31 31 H 1.09000 * 109.47409 * 92.39939 * 7 6 4 32 32 H 1.08998 * 109.47309 * 212.40278 * 7 6 4 33 33 H 1.09000 * 109.46810 * 332.39841 * 7 6 4 34 34 H 1.09005 * 109.46841 * 210.00052 * 8 6 4 35 35 H 1.09003 * 109.47592 * 329.99959 * 8 6 4 36 36 H 0.96998 * 120.00241 * 179.97438 * 12 11 9 37 37 H 1.09006 * 109.67503 * 162.46333 * 23 21 20 38 38 H 1.08999 * 109.67639 * 282.99226 * 23 21 20 39 39 H 1.08997 * 109.47457 * 59.99935 * 25 24 23 40 40 H 1.09010 * 109.46660 * 179.97438 * 25 24 23 41 41 H 1.08996 * 109.47373 * 299.99582 * 25 24 23 42 42 H 1.09000 * 109.47425 * 59.99994 * 26 24 23 43 43 H 1.08995 * 109.47031 * 180.02562 * 26 24 23 44 44 H 1.09006 * 109.47349 * 299.99716 * 26 24 23 45 45 H 1.08995 * 109.50580 * 39.55488 * 27 19 17 46 46 H 1.09000 * 109.54475 * 279.44176 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3238 1.0963 0.0000 4 6 1.8809 2.4964 -0.0005 5 8 0.7797 2.7859 -0.4297 6 7 2.6940 3.4606 0.4743 7 6 4.0614 3.1301 0.8829 8 6 2.2103 4.8393 0.5818 9 6 1.5867 5.0486 1.9377 10 1 1.5536 4.2357 2.6481 11 6 1.0585 6.2776 2.2713 12 7 1.0993 7.2676 1.4064 13 14 0.2861 6.5372 3.9523 14 1 1.3239 7.0016 4.9074 15 1 -0.7868 7.5590 3.8516 16 1 -0.2929 5.2574 4.4339 17 7 3.6365 0.6647 0.0006 18 1 4.4168 1.2410 -0.0005 19 6 3.6623 -0.6682 0.0024 20 6 2.3435 -1.1228 -0.0003 21 6 2.0223 -2.5582 -0.0036 22 8 0.8997 -2.9744 0.1929 23 6 3.1992 -3.4826 -0.2777 24 6 4.4082 -2.9750 0.5142 25 6 4.0336 -2.8707 1.9939 26 6 5.5654 -3.9634 0.3559 27 6 4.8485 -1.5989 0.0070 28 1 -0.3634 0.0007 1.0276 29 1 -0.3633 0.8896 -0.5144 30 1 -0.3633 -0.8903 -0.5133 31 1 4.7382 3.2797 0.0416 32 1 4.3600 3.7758 1.7087 33 1 4.1035 2.0888 1.2023 34 1 3.0456 5.5282 0.4558 35 1 1.4663 5.0249 -0.1929 36 1 0.7273 8.1322 1.6410 37 1 2.9517 -4.4957 0.0395 38 1 3.4297 -3.4773 -1.3430 39 1 3.7401 -3.8527 2.3646 40 1 4.8918 -2.5101 2.5614 41 1 3.2025 -2.1751 2.1102 42 1 5.8287 -4.0487 -0.6984 43 1 6.4279 -3.6061 0.9184 44 1 5.2638 -4.9398 0.7352 45 1 5.6219 -1.1994 0.6629 46 1 5.2422 -1.6927 -1.0051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184407745.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:17 Heat of formation + Delta-G solvation = -52.966656 kcal Electronic energy + Delta-G solvation = -27500.495115 eV Core-core repulsion = 23775.852678 eV Total energy + Delta-G solvation = -3724.642438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.15761 -40.64522 -39.61405 -38.14313 -36.89404 -34.87376 -33.87171 -31.92366 -30.19484 -29.73410 -28.57197 -28.17844 -27.77112 -26.87208 -25.03931 -23.48055 -21.85761 -20.75865 -20.38368 -18.81866 -18.75696 -18.42333 -17.35767 -17.14598 -16.53670 -16.37163 -16.13985 -16.02012 -15.70448 -15.28108 -15.23172 -14.80628 -14.50610 -14.39919 -14.14751 -13.98357 -13.94203 -13.68235 -13.46683 -13.33655 -13.15514 -12.94405 -12.88232 -12.80554 -12.59474 -12.54599 -12.47051 -12.25391 -11.97469 -11.78277 -11.64014 -11.60686 -10.94015 -10.68026 -10.48548 -10.00193 -9.61844 -9.08017 -8.27032 -6.42159 0.38667 0.48395 1.33490 1.37117 1.47274 1.78807 1.95411 2.17332 2.37149 2.45828 3.02748 3.24296 3.54900 3.64856 3.66935 3.83594 3.89624 4.00225 4.15898 4.24585 4.35092 4.42587 4.53727 4.60919 4.67203 4.70098 4.72964 4.76228 4.88942 4.93549 4.96730 4.99805 5.03883 5.06509 5.16358 5.19819 5.22110 5.34027 5.43370 5.45531 5.54879 5.57394 5.65919 5.75477 5.99721 6.28766 6.58312 6.66437 6.74425 7.18264 7.33188 8.79981 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019921 B = 0.003337 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.232256 B = 8387.987715 C = 8721.449262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.037 4.037 3 C -0.080 4.080 4 C 0.571 3.429 5 O -0.579 6.579 6 N -0.605 5.605 7 C 0.056 3.944 8 C 0.261 3.739 9 C -0.548 4.548 10 H 0.050 0.950 11 C 0.012 3.988 12 N -0.925 5.925 13 Si 0.966 3.034 14 H -0.260 1.260 15 H -0.279 1.279 16 H -0.277 1.277 17 N -0.497 5.497 18 H 0.438 0.562 19 C 0.141 3.859 20 C -0.302 4.302 21 C 0.426 3.574 22 O -0.511 6.511 23 C -0.146 4.146 24 C -0.043 4.043 25 C -0.157 4.157 26 C -0.135 4.135 27 C -0.049 4.049 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.033 0.967 35 H 0.002 0.998 36 H 0.269 0.731 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.029 0.971 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.119 0.881 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.992 -23.141 -2.320 29.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C -0.190 4.190 4 C 0.361 3.639 5 O -0.460 6.460 6 N -0.336 5.336 7 C -0.087 4.087 8 C 0.140 3.860 9 C -0.586 4.586 10 H 0.068 0.932 11 C -0.188 4.188 12 N -0.564 5.564 13 Si 0.790 3.210 14 H -0.185 1.185 15 H -0.205 1.205 16 H -0.202 1.202 17 N -0.098 5.098 18 H 0.286 0.714 19 C 0.013 3.987 20 C -0.309 4.309 21 C 0.308 3.692 22 O -0.390 6.390 23 C -0.183 4.183 24 C -0.044 4.044 25 C -0.214 4.214 26 C -0.193 4.193 27 C -0.086 4.086 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.051 0.949 35 H 0.020 0.980 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.142 0.858 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.048 0.952 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.137 0.863 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 16.941 -22.774 -2.461 28.490 hybrid contribution -1.013 1.340 0.802 1.861 sum 15.928 -21.434 -1.659 26.756 Atomic orbital electron populations 1.20296 0.90316 1.02410 1.01823 1.19554 0.95723 0.91177 0.97998 1.19658 0.84373 0.92327 1.22651 1.17578 0.84465 0.83953 0.77951 1.90735 1.23046 1.82494 1.49707 1.48049 1.14202 1.09504 1.61842 1.22378 0.81709 1.02434 1.02129 1.18821 0.94309 0.77072 0.95764 1.21670 1.39548 0.96940 1.00449 0.93189 1.25811 0.96000 0.95457 1.01513 1.70033 1.46430 1.03158 1.36815 0.85441 0.78535 0.77746 0.79255 1.18495 1.20452 1.20186 1.42213 1.07143 1.06954 1.53458 0.71391 1.21911 0.97026 0.83297 0.96420 1.20278 0.92969 0.95029 1.22603 1.22548 0.89254 0.88135 0.69268 1.90509 1.26952 1.80955 1.40618 1.22507 0.92710 0.99100 1.04025 1.20452 0.94952 0.94473 0.94508 1.22103 1.01715 1.01862 0.95749 1.21840 0.96050 0.97769 1.03594 1.20816 0.91454 0.90434 1.05936 0.92141 0.91884 0.90887 0.89450 0.90069 0.89501 0.94949 0.97977 0.92239 0.88215 0.85842 0.92043 0.90326 0.95194 0.90512 0.90614 0.91840 0.86292 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.56 9.78 71.24 0.70 -2.86 16 2 C -0.04 -1.35 6.18 -19.79 -0.12 -1.48 16 3 C -0.08 -2.83 6.42 40.04 0.26 -2.58 16 4 C 0.57 25.93 7.56 86.50 0.65 26.58 16 5 O -0.58 -32.01 14.52 -4.28 -0.06 -32.07 16 6 N -0.61 -26.09 2.86 -855.70 -2.44 -28.53 16 7 C 0.06 1.55 9.11 127.77 1.16 2.72 16 8 C 0.26 14.13 5.21 85.63 0.45 14.58 16 9 C -0.55 -31.90 9.39 25.60 0.24 -31.66 16 10 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 11 C 0.01 0.68 5.46 84.65 0.46 1.14 16 12 N -0.92 -55.87 13.29 21.45 0.28 -55.59 16 13 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 14 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 15 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 16 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 17 N -0.50 -11.08 4.69 -170.68 -0.80 -11.88 16 18 H 0.44 6.77 5.75 -92.70 -0.53 6.24 16 19 C 0.14 2.66 6.66 42.66 0.28 2.95 16 20 C -0.30 -8.38 5.28 -20.22 -0.11 -8.48 16 21 C 0.43 11.01 5.92 28.47 0.17 11.18 16 22 O -0.51 -17.48 16.99 -3.19 -0.05 -17.54 16 23 C -0.15 -1.99 5.01 30.37 0.15 -1.84 16 24 C -0.04 -0.38 0.75 -52.07 -0.04 -0.42 16 25 C -0.16 -2.05 7.94 71.98 0.57 -1.48 16 26 C -0.14 -0.41 8.43 71.98 0.61 0.19 16 27 C -0.05 -0.36 4.96 29.91 0.15 -0.22 16 28 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.06 2.73 6.29 -2.39 -0.02 2.72 16 30 H 0.07 2.66 7.45 -2.39 -0.02 2.65 16 31 H 0.09 1.76 7.96 -2.39 -0.02 1.74 16 32 H 0.08 2.34 8.09 -2.39 -0.02 2.32 16 33 H 0.09 1.94 4.69 -2.39 -0.01 1.93 16 34 H 0.03 1.73 8.07 -2.38 -0.02 1.71 16 35 H 0.00 0.13 7.35 -2.39 -0.02 0.11 16 36 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.03 0.60 6.03 -2.39 -0.01 0.59 16 42 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 43 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 44 H 0.06 0.24 8.14 -2.38 -0.02 0.22 16 45 H 0.12 0.29 8.13 -2.39 -0.02 0.28 16 46 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -85.62 366.46 5.00 -80.63 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 0.47 Total: 9.26 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 5.58 Total: 8.34 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -2.96 Total: -96.00 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -0.12 Total: -49.60 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -85.62 5.00 -80.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184407745.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.659 kcal (2) G-P(sol) polarization free energy of solvation -85.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds