Wall clock time and date at job start Tue Mar 31 2020 11:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00373 * 2 1 4 4 H 1.48504 * 109.47342 * 270.00214 * 3 2 1 5 5 H 1.48501 * 109.46850 * 30.00152 * 3 2 1 6 6 H 1.48500 * 109.47139 * 149.99895 * 3 2 1 7 7 C 1.37882 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00086 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99677 * 179.97438 * 7 2 1 10 10 N 1.46495 * 109.46620 * 179.97438 * 9 7 2 11 11 C 1.46504 * 119.99943 * 269.99662 * 10 9 7 12 12 C 1.50697 * 109.47125 * 270.00401 * 11 10 9 13 13 C 1.38674 * 120.41933 * 89.99964 * 12 11 10 14 14 C 1.38634 * 118.42237 * 180.02562 * 13 12 11 15 15 C 1.38224 * 119.15904 * 359.97438 * 14 13 12 16 16 N 1.31856 * 120.76570 * 0.02562 * 15 14 13 17 17 C 1.31884 * 121.72502 * 359.70731 * 16 15 14 18 18 C 1.34776 * 120.00428 * 90.00022 * 10 9 7 19 19 O 1.21283 * 120.00127 * 179.97438 * 18 10 9 20 20 C 1.50697 * 119.99699 * 359.97438 * 18 10 9 21 21 C 1.52999 * 109.47386 * 179.97438 * 20 18 10 22 22 H 1.08999 * 109.52160 * 305.12821 * 21 20 18 23 23 C 1.53178 * 109.52605 * 184.99784 * 21 20 18 24 24 C 1.53178 * 109.03511 * 183.05016 * 23 21 20 25 25 C 1.53093 * 109.16255 * 56.98447 * 24 23 21 26 26 O 1.42904 * 109.42351 * 302.38111 * 25 24 23 27 27 C 1.42930 * 114.08305 * 61.15476 * 26 25 24 28 28 H 0.97001 * 119.99711 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46760 * 59.99622 * 9 7 2 30 30 H 1.09003 * 109.46684 * 299.99835 * 9 7 2 31 31 H 1.08998 * 109.47054 * 30.00018 * 11 10 9 32 32 H 1.08999 * 109.47242 * 150.00605 * 11 10 9 33 33 H 1.07997 * 120.78778 * 359.97438 * 13 12 11 34 34 H 1.07997 * 120.41715 * 180.02562 * 14 13 12 35 35 H 1.07998 * 119.61573 * 180.02562 * 15 14 13 36 36 H 1.08004 * 119.61702 * 180.31466 * 17 16 15 37 37 H 1.09000 * 109.47270 * 59.99644 * 20 18 10 38 38 H 1.09001 * 109.47506 * 300.00041 * 20 18 10 39 39 H 1.09002 * 109.54068 * 63.18427 * 23 21 20 40 40 H 1.08996 * 109.54450 * 302.92001 * 23 21 20 41 41 H 1.09000 * 109.52619 * 297.07706 * 24 23 21 42 42 H 1.08998 * 109.51869 * 176.88944 * 24 23 21 43 43 H 1.09002 * 109.48198 * 62.37219 * 25 24 23 44 44 H 1.08999 * 109.48029 * 182.39833 * 25 24 23 45 45 H 1.09003 * 109.47243 * 178.86599 * 27 26 25 46 46 H 1.08992 * 109.47948 * 58.83460 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9997 -2.5754 -0.0010 11 6 4.2443 -3.2657 1.2678 12 6 5.6678 -3.0289 1.7022 13 6 5.9861 -1.9419 2.5024 14 6 7.3088 -1.7633 2.8772 15 6 8.2595 -2.6685 2.4443 16 7 7.9205 -3.6910 1.6840 17 6 6.6716 -3.8949 1.3125 18 6 4.2238 -3.2111 -1.1681 19 8 4.6284 -4.3544 -1.1679 20 6 3.9717 -2.5012 -2.4732 21 6 4.3033 -3.4386 -3.6361 22 1 5.3244 -3.8045 -3.5291 23 6 4.1673 -2.6800 -4.9599 24 6 4.4270 -3.6474 -6.1189 25 6 3.4515 -4.8231 -6.0202 26 8 3.6086 -5.4659 -4.7536 27 6 3.3326 -4.6224 -3.6333 28 1 -0.4850 0.8401 0.0004 29 1 3.8751 -0.6805 0.8888 30 1 3.8744 -0.6801 -0.8912 31 1 3.5639 -2.8813 2.0277 32 1 4.0773 -4.3349 1.1378 33 1 5.2218 -1.2506 2.8253 34 1 7.5926 -0.9280 3.5002 35 1 9.2921 -2.5366 2.7322 36 1 6.4312 -4.7465 0.6933 37 1 4.6015 -1.6135 -2.5316 38 1 2.9236 -2.2073 -2.5305 39 1 4.8950 -1.8691 -4.9918 40 1 3.1603 -2.2716 -5.0444 41 1 5.4506 -4.0176 -6.0621 42 1 4.2781 -3.1291 -7.0662 43 1 2.4295 -4.4568 -6.1177 44 1 3.6597 -5.5361 -6.8179 45 1 3.4553 -5.1910 -2.7114 46 1 2.3091 -4.2535 -3.6995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192960331.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:29 Heat of formation + Delta-G solvation = -59.975905 kcal Electronic energy + Delta-G solvation = -27394.007724 eV Core-core repulsion = 23669.061343 eV Total energy + Delta-G solvation = -3724.946381 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.23950 -39.60966 -38.53320 -35.49140 -34.17772 -33.06555 -32.23773 -31.90928 -31.39568 -28.24493 -27.76172 -25.61126 -24.78235 -23.45782 -22.81847 -22.43553 -21.60782 -19.89306 -18.37885 -17.26221 -16.89017 -16.57489 -16.09695 -16.00777 -15.65521 -15.65416 -15.22444 -14.76639 -14.39036 -14.26652 -13.97071 -13.69718 -13.45080 -13.10330 -12.91851 -12.71824 -12.51125 -12.39641 -12.21318 -12.11196 -11.71657 -11.55852 -11.40725 -11.07695 -10.98948 -10.83886 -10.67391 -10.53966 -10.41224 -10.09661 -9.80529 -9.65897 -9.34628 -9.26340 -9.18172 -8.85489 -8.75344 -7.91218 -6.31584 -4.34057 1.21560 1.41817 3.08346 3.16008 3.18707 3.22581 3.63948 4.06620 4.15412 4.16716 4.58786 4.86579 4.87988 4.94486 4.95040 4.98499 5.07050 5.11423 5.13595 5.21673 5.32517 5.34643 5.51018 5.62887 5.63091 5.80177 5.81705 5.82767 5.92303 5.95984 5.99093 6.07421 6.09706 6.15983 6.22132 6.22297 6.32896 6.47690 6.51237 6.55320 6.60824 6.85497 7.17180 7.33032 7.42938 7.99397 8.10603 8.29061 8.72049 8.81402 9.27362 10.80800 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.008080 B = 0.005546 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3464.303494 B = 5047.734972 C = 7605.098985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.078 3.922 3 Si 0.869 3.131 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.209 3.791 10 N -0.586 5.586 11 C 0.160 3.840 12 C -0.146 4.146 13 C -0.063 4.063 14 C -0.179 4.179 15 C 0.089 3.911 16 N -0.491 5.491 17 C 0.118 3.882 18 C 0.521 3.479 19 O -0.563 6.563 20 C -0.133 4.133 21 C -0.103 4.103 22 H 0.082 0.918 23 C -0.120 4.120 24 C -0.153 4.153 25 C 0.057 3.943 26 O -0.383 6.383 27 C 0.063 3.937 28 H 0.267 0.733 29 H 0.032 0.968 30 H 0.030 0.970 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.150 0.850 36 H 0.160 0.840 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.047 0.953 44 H 0.087 0.913 45 H 0.114 0.886 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.153 -2.294 -3.106 10.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.126 4.126 3 Si 0.695 3.305 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.098 0.902 9 C 0.088 3.912 10 N -0.316 5.316 11 C 0.036 3.964 12 C -0.149 4.149 13 C -0.089 4.089 14 C -0.199 4.199 15 C -0.068 4.068 16 N -0.199 5.199 17 C -0.039 4.039 18 C 0.310 3.690 19 O -0.444 6.444 20 C -0.173 4.173 21 C -0.122 4.122 22 H 0.100 0.900 23 C -0.158 4.158 24 C -0.191 4.191 25 C -0.020 4.020 26 O -0.302 6.302 27 C -0.014 4.014 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.167 0.833 36 H 0.177 0.823 37 H 0.107 0.893 38 H 0.127 0.873 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.105 0.895 45 H 0.131 0.869 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.869 -3.516 -3.354 11.906 hybrid contribution -0.479 2.309 0.344 2.383 sum 10.390 -1.207 -3.010 10.885 Atomic orbital electron populations 1.69883 1.06205 1.27283 1.49127 1.24865 0.94695 0.98820 0.94201 0.86970 0.80414 0.84107 0.79001 1.19817 1.20805 1.18957 1.21358 0.88898 0.95062 1.52790 0.90211 1.19825 0.95885 0.77914 0.97561 1.47938 1.63653 1.15885 1.04127 1.20150 0.90293 0.99056 0.86879 1.21462 0.98666 0.96321 0.98446 1.21628 0.96641 0.95984 0.94670 1.22101 0.94098 1.01194 1.02539 1.22712 0.99676 0.90487 0.93921 1.67725 1.20356 1.20433 1.11435 1.22885 0.87242 0.98323 0.95437 1.20532 0.76446 0.86319 0.85727 1.90571 1.47894 1.18196 1.87702 1.21668 1.05338 0.98845 0.91413 1.21513 1.01635 0.95693 0.93344 0.89981 1.21672 1.02346 0.97807 0.93942 1.22166 1.00811 0.97337 0.98797 1.22542 0.97846 0.94898 0.86690 1.87951 1.90399 1.38001 1.13824 1.22888 0.96457 0.92307 0.89717 0.92267 0.95036 0.95216 0.89040 0.89294 0.84695 0.85112 0.83264 0.82254 0.89349 0.87342 0.91576 0.91477 0.91244 0.91236 0.93426 0.89489 0.86856 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.73 13.96 55.43 0.77 -23.95 16 2 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 18.88 27.47 -169.99 -4.67 14.22 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 7 C -0.54 -13.37 9.83 -34.44 -0.34 -13.71 16 8 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 9 C 0.21 4.29 4.03 -5.19 -0.02 4.27 16 10 N -0.59 -11.02 2.44 -176.43 -0.43 -11.45 16 11 C 0.16 2.68 5.56 -5.19 -0.03 2.65 16 12 C -0.15 -2.27 5.48 -104.48 -0.57 -2.84 16 13 C -0.06 -0.88 9.86 -39.27 -0.39 -1.27 16 14 C -0.18 -2.21 10.11 -39.44 -0.40 -2.61 16 15 C 0.09 1.16 11.18 -17.55 -0.20 0.96 16 16 N -0.49 -7.71 10.36 -13.25 -0.14 -7.85 16 17 C 0.12 1.90 10.86 -17.55 -0.19 1.71 16 18 C 0.52 9.70 7.41 -10.99 -0.08 9.62 16 19 O -0.56 -11.07 13.15 5.55 0.07 -11.00 16 20 C -0.13 -2.21 3.73 -27.88 -0.10 -2.31 16 21 C -0.10 -1.56 2.03 -90.48 -0.18 -1.74 16 22 H 0.08 1.34 7.95 -51.93 -0.41 0.92 16 23 C -0.12 -1.52 5.31 -26.55 -0.14 -1.67 16 24 C -0.15 -1.73 6.14 -26.59 -0.16 -1.90 16 25 C 0.06 0.70 6.84 37.21 0.25 0.96 16 26 O -0.38 -6.08 10.77 -35.23 -0.38 -6.46 16 27 C 0.06 1.01 5.84 37.21 0.22 1.23 16 28 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 30 H 0.03 0.60 5.87 -51.93 -0.30 0.29 16 31 H 0.09 1.50 8.03 -51.93 -0.42 1.08 16 32 H 0.09 1.48 7.37 -51.93 -0.38 1.10 16 33 H 0.14 1.78 8.06 -52.49 -0.42 1.35 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.16 2.61 7.64 -52.48 -0.40 2.21 16 37 H 0.09 1.37 7.40 -51.93 -0.38 0.99 16 38 H 0.11 1.94 8.00 -51.93 -0.42 1.52 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.11 2.05 6.04 -51.93 -0.31 1.74 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -29.06 371.56 -8.82 -37.89 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.22 Total: 7.74 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -2.43 Total: -4.73 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.21 Total: -43.25 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.31 Total: -17.45 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.67 Total: 14.22 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.06 -8.82 -37.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192960331.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.090 kcal (2) G-P(sol) polarization free energy of solvation -29.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds