Wall clock time and date at job start Tue Mar 31 2020 11:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00373 * 2 1 4 4 H 1.48504 * 109.47342 * 270.00214 * 3 2 1 5 5 H 1.48501 * 109.46850 * 30.00152 * 3 2 1 6 6 H 1.48500 * 109.47139 * 149.99895 * 3 2 1 7 7 C 1.37882 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00086 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99677 * 179.97438 * 7 2 1 10 10 N 1.46495 * 109.46620 * 179.97438 * 9 7 2 11 11 C 1.46504 * 119.99943 * 269.99662 * 10 9 7 12 12 C 1.50697 * 109.47125 * 270.00401 * 11 10 9 13 13 C 1.38674 * 120.41933 * 89.99964 * 12 11 10 14 14 C 1.38634 * 118.42237 * 180.02562 * 13 12 11 15 15 C 1.38224 * 119.15904 * 359.97438 * 14 13 12 16 16 N 1.31856 * 120.76570 * 0.02562 * 15 14 13 17 17 C 1.31884 * 121.72502 * 359.70731 * 16 15 14 18 18 C 1.34776 * 120.00428 * 90.00022 * 10 9 7 19 19 O 1.21283 * 120.00127 * 179.97438 * 18 10 9 20 20 C 1.50697 * 119.99699 * 359.97438 * 18 10 9 21 21 C 1.52999 * 109.47386 * 179.97438 * 20 18 10 22 22 H 1.08999 * 109.52160 * 305.12821 * 21 20 18 23 23 C 1.53178 * 109.52605 * 184.99784 * 21 20 18 24 24 C 1.53178 * 109.03511 * 183.05016 * 23 21 20 25 25 C 1.53093 * 109.16255 * 56.98447 * 24 23 21 26 26 O 1.42904 * 109.42351 * 302.38111 * 25 24 23 27 27 C 1.42930 * 114.08305 * 61.15476 * 26 25 24 28 28 H 0.97001 * 119.99711 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46760 * 59.99622 * 9 7 2 30 30 H 1.09003 * 109.46684 * 299.99835 * 9 7 2 31 31 H 1.08998 * 109.47054 * 30.00018 * 11 10 9 32 32 H 1.08999 * 109.47242 * 150.00605 * 11 10 9 33 33 H 1.07997 * 120.78778 * 359.97438 * 13 12 11 34 34 H 1.07997 * 120.41715 * 180.02562 * 14 13 12 35 35 H 1.07998 * 119.61573 * 180.02562 * 15 14 13 36 36 H 1.08004 * 119.61702 * 180.31466 * 17 16 15 37 37 H 1.09000 * 109.47270 * 59.99644 * 20 18 10 38 38 H 1.09001 * 109.47506 * 300.00041 * 20 18 10 39 39 H 1.09002 * 109.54068 * 63.18427 * 23 21 20 40 40 H 1.08996 * 109.54450 * 302.92001 * 23 21 20 41 41 H 1.09000 * 109.52619 * 297.07706 * 24 23 21 42 42 H 1.08998 * 109.51869 * 176.88944 * 24 23 21 43 43 H 1.09002 * 109.48198 * 62.37219 * 25 24 23 44 44 H 1.08999 * 109.48029 * 182.39833 * 25 24 23 45 45 H 1.09003 * 109.47243 * 178.86599 * 27 26 25 46 46 H 1.08992 * 109.47948 * 58.83460 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9997 -2.5754 -0.0010 11 6 4.2443 -3.2657 1.2678 12 6 5.6678 -3.0289 1.7022 13 6 5.9861 -1.9419 2.5024 14 6 7.3088 -1.7633 2.8772 15 6 8.2595 -2.6685 2.4443 16 7 7.9205 -3.6910 1.6840 17 6 6.6716 -3.8949 1.3125 18 6 4.2238 -3.2111 -1.1681 19 8 4.6284 -4.3544 -1.1679 20 6 3.9717 -2.5012 -2.4732 21 6 4.3033 -3.4386 -3.6361 22 1 5.3244 -3.8045 -3.5291 23 6 4.1673 -2.6800 -4.9599 24 6 4.4270 -3.6474 -6.1189 25 6 3.4515 -4.8231 -6.0202 26 8 3.6086 -5.4659 -4.7536 27 6 3.3326 -4.6224 -3.6333 28 1 -0.4850 0.8401 0.0004 29 1 3.8751 -0.6805 0.8888 30 1 3.8744 -0.6801 -0.8912 31 1 3.5639 -2.8813 2.0277 32 1 4.0773 -4.3349 1.1378 33 1 5.2218 -1.2506 2.8253 34 1 7.5926 -0.9280 3.5002 35 1 9.2921 -2.5366 2.7322 36 1 6.4312 -4.7465 0.6933 37 1 4.6015 -1.6135 -2.5316 38 1 2.9236 -2.2073 -2.5305 39 1 4.8950 -1.8691 -4.9918 40 1 3.1603 -2.2716 -5.0444 41 1 5.4506 -4.0176 -6.0621 42 1 4.2781 -3.1291 -7.0662 43 1 2.4295 -4.4568 -6.1177 44 1 3.6597 -5.5361 -6.8179 45 1 3.4553 -5.1910 -2.7114 46 1 2.3091 -4.2535 -3.6995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192960331.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:28 Heat of formation + Delta-G solvation = -76.653801 kcal Electronic energy + Delta-G solvation = -27394.730932 eV Core-core repulsion = 23669.061343 eV Total energy + Delta-G solvation = -3725.669589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.51180 -40.81503 -39.80689 -37.00403 -35.44041 -34.73764 -33.64299 -33.00134 -32.54813 -29.91150 -29.09865 -26.90168 -25.93650 -24.74277 -24.23430 -23.74621 -22.75896 -21.03438 -19.86751 -19.11811 -18.09843 -17.89433 -17.30721 -17.27592 -17.02529 -16.88138 -16.52050 -16.04400 -15.90516 -15.47860 -15.11209 -15.00928 -14.70460 -14.44201 -14.28580 -14.04637 -13.80670 -13.68249 -13.52774 -13.39916 -13.20668 -12.97021 -12.66894 -12.45213 -12.42717 -12.11703 -12.04554 -11.91576 -11.72389 -11.66678 -11.24528 -10.87127 -10.79059 -10.60341 -10.44670 -10.36888 -9.95366 -9.46477 -8.28799 -6.36384 0.11970 0.32610 1.40371 1.42108 1.50828 1.73091 2.26575 2.34649 2.92655 2.99292 3.05323 3.52162 3.60041 3.79892 3.84047 3.88008 3.89202 4.04301 4.05242 4.09908 4.12271 4.26906 4.38547 4.48589 4.56723 4.58954 4.67277 4.68551 4.73263 4.76902 4.77767 4.87077 4.87234 4.89305 4.99317 5.08441 5.12145 5.19564 5.26640 5.35298 5.42485 5.44503 5.64426 5.78420 6.18787 6.27968 6.58727 6.70985 7.01185 7.24121 7.34858 8.87257 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.008080 B = 0.005546 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3464.303494 B = 5047.734972 C = 7605.098985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.022 3.978 3 Si 0.935 3.065 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.237 1.237 7 C -0.538 4.538 8 H 0.032 0.968 9 C 0.219 3.781 10 N -0.591 5.591 11 C 0.161 3.839 12 C -0.154 4.154 13 C -0.070 4.070 14 C -0.166 4.166 15 C 0.088 3.912 16 N -0.514 5.514 17 C 0.104 3.896 18 C 0.512 3.488 19 O -0.577 6.577 20 C -0.128 4.128 21 C -0.095 4.095 22 H 0.071 0.929 23 C -0.119 4.119 24 C -0.148 4.148 25 C 0.047 3.953 26 O -0.404 6.404 27 C 0.067 3.933 28 H 0.268 0.732 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.146 0.854 34 H 0.169 0.831 35 H 0.185 0.815 36 H 0.142 0.858 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.052 0.948 44 H 0.109 0.891 45 H 0.086 0.914 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.824 0.076 -3.422 13.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.188 1.188 5 H -0.214 1.214 6 H -0.160 1.160 7 C -0.576 4.576 8 H 0.050 0.950 9 C 0.097 3.903 10 N -0.320 5.320 11 C 0.038 3.962 12 C -0.158 4.158 13 C -0.096 4.096 14 C -0.185 4.185 15 C -0.069 4.069 16 N -0.223 5.223 17 C -0.052 4.052 18 C 0.302 3.698 19 O -0.459 6.459 20 C -0.167 4.167 21 C -0.114 4.114 22 H 0.089 0.911 23 C -0.156 4.156 24 C -0.185 4.185 25 C -0.029 4.029 26 O -0.323 6.323 27 C -0.009 4.009 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.164 0.836 34 H 0.187 0.813 35 H 0.202 0.798 36 H 0.160 0.840 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.116 0.884 43 H 0.071 0.929 44 H 0.127 0.873 45 H 0.104 0.896 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 13.562 -1.174 -3.672 14.100 hybrid contribution -1.325 1.447 0.475 2.019 sum 12.237 0.273 -3.197 12.651 Atomic orbital electron populations 1.70051 1.08405 1.28317 1.51310 1.25738 0.95342 1.02885 0.93738 0.85896 0.79931 0.78670 0.79684 1.18752 1.21377 1.15963 1.21481 0.91116 0.93201 1.51811 0.94978 1.19641 0.92904 0.79069 0.98653 1.47984 1.63567 1.15531 1.04966 1.20144 0.91661 0.98299 0.86135 1.21239 0.97315 0.97441 0.99759 1.21846 0.98034 0.95460 0.94268 1.22483 0.92832 1.01604 1.01575 1.23355 1.01572 0.89433 0.92558 1.67718 1.19952 1.21996 1.12601 1.22655 0.87932 0.98419 0.96243 1.20967 0.76105 0.86294 0.86414 1.90567 1.48499 1.18848 1.87966 1.21666 1.04591 0.99610 0.90874 1.21426 1.00367 0.95192 0.94395 0.91097 1.21691 1.02900 0.98251 0.92758 1.22150 1.00334 0.96644 0.99412 1.22850 0.98640 0.96004 0.85431 1.87912 1.90547 1.38853 1.14972 1.22677 0.96588 0.92395 0.89264 0.92324 0.93621 0.93694 0.89093 0.90330 0.83647 0.81317 0.79823 0.84012 0.87601 0.88862 0.89983 0.91454 0.91322 0.88409 0.92929 0.87260 0.89624 0.94053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.88 13.96 21.45 0.30 -53.58 16 2 C 0.02 1.14 5.47 84.66 0.46 1.60 16 3 Si 0.94 37.67 27.47 68.60 1.88 39.56 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.29 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.24 -8.39 6.54 99.48 0.65 -7.74 16 7 C -0.54 -26.99 9.83 25.60 0.25 -26.74 16 8 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 9 C 0.22 8.77 4.03 85.64 0.35 9.12 16 10 N -0.59 -22.49 2.44 -830.50 -2.03 -24.51 16 11 C 0.16 5.53 5.56 85.63 0.48 6.01 16 12 C -0.15 -4.74 5.48 -19.77 -0.11 -4.85 16 13 C -0.07 -1.79 9.86 22.47 0.22 -1.57 16 14 C -0.17 -3.44 10.11 22.36 0.23 -3.22 16 15 C 0.09 2.01 11.18 84.69 0.95 2.96 16 16 N -0.51 -15.55 10.36 -195.84 -2.03 -17.57 16 17 C 0.10 3.36 10.86 84.67 0.92 4.28 16 18 C 0.51 19.61 7.41 87.66 0.65 20.26 16 19 O -0.58 -23.81 13.15 -3.04 -0.04 -23.85 16 20 C -0.13 -4.25 3.73 29.85 0.11 -4.14 16 21 C -0.09 -2.87 2.03 -10.70 -0.02 -2.89 16 22 H 0.07 2.32 7.95 -2.39 -0.02 2.30 16 23 C -0.12 -2.80 5.31 30.71 0.16 -2.64 16 24 C -0.15 -3.00 6.14 30.68 0.19 -2.81 16 25 C 0.05 1.08 6.84 72.01 0.49 1.58 16 26 O -0.40 -12.92 10.77 -148.98 -1.60 -14.52 16 27 C 0.07 2.26 5.84 72.01 0.42 2.69 16 28 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.05 1.73 7.13 -2.39 -0.02 1.71 16 30 H 0.05 1.69 5.87 -2.39 -0.01 1.68 16 31 H 0.09 3.06 8.03 -2.39 -0.02 3.04 16 32 H 0.08 2.80 7.37 -2.39 -0.02 2.79 16 33 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 34 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.14 4.94 7.64 -2.91 -0.02 4.92 16 37 H 0.11 3.12 7.40 -2.39 -0.02 3.10 16 38 H 0.09 3.41 8.00 -2.39 -0.02 3.39 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.09 3.32 6.04 -2.39 -0.01 3.31 16 46 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -65.57 371.56 3.13 -62.44 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.90 Total: 32.40 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 5.75 Total: -0.36 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -3.76 Total: -95.67 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -1.64 Total: -38.37 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 1.88 Total: 39.56 kcal Total: -65.57 3.13 -62.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192960331.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.216 kcal (2) G-P(sol) polarization free energy of solvation -65.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds