Wall clock time and date at job start Tue Mar 31 2020 11:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.46508 * 120.00138 * 89.99354 * 10 9 7 12 12 C 1.50705 * 109.46774 * 89.99880 * 11 10 9 13 13 C 1.38667 * 120.41832 * 269.72133 * 12 11 10 14 14 C 1.38631 * 118.41674 * 179.78523 * 13 12 11 15 15 C 1.38223 * 119.16330 * 0.51338 * 14 13 12 16 16 N 1.31857 * 120.76134 * 359.72582 * 15 14 13 17 17 C 1.31891 * 121.72536 * 0.02562 * 16 15 14 18 18 C 1.34777 * 120.00124 * 269.99834 * 10 9 7 19 19 O 1.21280 * 120.00078 * 179.97438 * 18 10 9 20 20 C 1.50695 * 119.99627 * 359.97438 * 18 10 9 21 21 C 1.53002 * 109.46701 * 180.02562 * 20 18 10 22 22 H 1.08995 * 109.52355 * 55.12931 * 21 20 18 23 23 C 1.53182 * 109.52235 * 175.31683 * 21 20 18 24 24 C 1.53175 * 109.03921 * 176.88485 * 23 21 20 25 25 C 1.53094 * 109.16359 * 303.01866 * 24 23 21 26 26 O 1.42906 * 109.41214 * 57.60751 * 25 24 23 27 27 C 1.42897 * 114.10003 * 298.84103 * 26 25 24 28 28 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 30 30 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 31 31 H 1.08991 * 109.47146 * 210.00176 * 11 10 9 32 32 H 1.09005 * 109.46914 * 330.00176 * 11 10 9 33 33 H 1.07998 * 120.79086 * 0.02707 * 13 12 11 34 34 H 1.08003 * 120.42009 * 180.26831 * 14 13 12 35 35 H 1.07999 * 119.62153 * 179.70715 * 15 14 13 36 36 H 1.07997 * 119.61288 * 179.97438 * 17 16 15 37 37 H 1.08992 * 109.47524 * 300.00109 * 20 18 10 38 38 H 1.09003 * 109.46968 * 60.00574 * 20 18 10 39 39 H 1.09006 * 109.54029 * 296.75574 * 23 21 20 40 40 H 1.09004 * 109.54438 * 57.01957 * 23 21 20 41 41 H 1.09002 * 109.52460 * 183.10927 * 24 23 21 42 42 H 1.09003 * 109.52285 * 62.92350 * 24 23 21 43 43 H 1.08994 * 109.48000 * 297.62560 * 25 24 23 44 44 H 1.08999 * 109.47692 * 177.58827 * 25 24 23 45 45 H 1.09010 * 109.47976 * 301.18003 * 27 26 25 46 46 H 1.09001 * 109.49201 * 181.14898 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 2.6791 -4.1705 1.2656 12 6 1.7624 -5.2851 1.6997 13 6 0.6657 -5.0185 2.5053 14 6 -0.1526 -6.0743 2.8763 15 6 0.1557 -7.3500 2.4428 16 7 1.2101 -7.5671 1.6814 17 6 2.0077 -6.5864 1.3051 18 6 2.6409 -4.1239 -1.1703 19 8 3.4293 -5.0454 -1.1712 20 6 2.1508 -3.5504 -2.4749 21 6 2.7964 -4.3054 -3.6384 22 1 2.5998 -5.3724 -3.5342 23 6 2.2118 -3.8028 -4.9621 24 6 2.9206 -4.5094 -6.1217 25 6 4.4270 -4.2568 -6.0188 26 8 4.9008 -4.7194 -4.7524 27 6 4.3077 -4.0607 -3.6315 28 1 -0.4850 -0.8401 -0.0004 29 1 0.6241 -2.5574 0.8881 30 1 0.6247 -2.5564 -0.8919 31 1 3.6885 -4.5604 1.1348 32 1 2.6869 -3.3895 2.0259 33 1 0.4518 -4.0118 2.8327 34 1 -1.0179 -5.9027 3.4995 35 1 -0.4740 -8.1786 2.7314 36 1 2.8623 -6.8030 0.6814 37 1 1.0672 -3.6527 -2.5325 38 1 2.4197 -2.4956 -2.5319 39 1 1.1452 -4.0246 -4.9971 40 1 2.3647 -2.7266 -5.0429 41 1 2.5493 -4.1175 -7.0686 42 1 2.7265 -5.5807 -6.0687 43 1 4.6237 -3.1888 -6.1124 44 1 4.9408 -4.7926 -6.8169 45 1 4.5028 -2.9900 -3.6940 46 1 4.7355 -4.4550 -2.7097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192960344.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:30 Heat of formation + Delta-G solvation = -83.030904 kcal Electronic energy + Delta-G solvation = -27382.513684 eV Core-core repulsion = 23656.567563 eV Total energy + Delta-G solvation = -3725.946121 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.57018 -40.86912 -39.84577 -37.12688 -35.52589 -34.96933 -33.61071 -33.04141 -32.55086 -29.25518 -28.79958 -26.87822 -25.95978 -25.08007 -24.44632 -23.83880 -22.82073 -21.08331 -20.21674 -18.99313 -18.18534 -17.83062 -17.42180 -17.25391 -17.07655 -16.84995 -16.58706 -15.95571 -15.65018 -15.60980 -15.19202 -15.06128 -14.78084 -14.47725 -14.28486 -14.06009 -13.83773 -13.64775 -13.55990 -13.47350 -13.34732 -12.82374 -12.67199 -12.58914 -12.45522 -12.15226 -11.96842 -11.93938 -11.74102 -11.28288 -11.21826 -10.92679 -10.68710 -10.57350 -10.49221 -10.39519 -10.01239 -9.52004 -8.62489 -6.41408 0.05799 0.25719 1.56699 1.60738 1.66920 1.80917 2.20529 2.55549 2.86942 2.96740 3.14126 3.46447 3.54702 3.75025 3.79830 3.82320 3.82843 3.98635 4.01822 4.03488 4.07169 4.23444 4.34832 4.42714 4.53446 4.55020 4.59619 4.62220 4.68201 4.69783 4.74281 4.81010 4.85678 4.88261 4.96359 5.04650 5.08278 5.13194 5.23648 5.29093 5.38347 5.59009 5.71884 5.82400 6.11117 6.26207 6.47917 6.59553 6.94589 7.22124 7.37744 8.72657 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007395 B = 0.005701 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3785.270719 B = 4910.558937 C = 7905.001539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.014 4.014 3 Si 1.106 2.894 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.618 4.618 8 H 0.046 0.954 9 C 0.243 3.757 10 N -0.590 5.590 11 C 0.162 3.838 12 C -0.156 4.156 13 C -0.070 4.070 14 C -0.166 4.166 15 C 0.089 3.911 16 N -0.512 5.512 17 C 0.104 3.896 18 C 0.512 3.488 19 O -0.576 6.576 20 C -0.122 4.122 21 C -0.095 4.095 22 H 0.067 0.933 23 C -0.118 4.118 24 C -0.148 4.148 25 C 0.048 3.952 26 O -0.403 6.403 27 C 0.069 3.931 28 H 0.261 0.739 29 H 0.018 0.982 30 H 0.022 0.978 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.138 0.862 34 H 0.168 0.832 35 H 0.187 0.813 36 H 0.145 0.855 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.110 0.890 45 H 0.046 0.954 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.880 -7.659 -3.551 8.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.215 4.215 3 Si 0.929 3.071 4 H -0.210 1.210 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.657 4.657 8 H 0.064 0.936 9 C 0.122 3.878 10 N -0.320 5.320 11 C 0.039 3.961 12 C -0.160 4.160 13 C -0.097 4.097 14 C -0.186 4.186 15 C -0.068 4.068 16 N -0.221 5.221 17 C -0.052 4.052 18 C 0.302 3.698 19 O -0.458 6.458 20 C -0.162 4.162 21 C -0.114 4.114 22 H 0.086 0.914 23 C -0.156 4.156 24 C -0.186 4.186 25 C -0.028 4.028 26 O -0.322 6.322 27 C -0.008 4.008 28 H 0.070 0.930 29 H 0.036 0.964 30 H 0.040 0.960 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.156 0.844 34 H 0.186 0.814 35 H 0.204 0.796 36 H 0.162 0.838 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.116 0.884 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.128 0.872 45 H 0.064 0.936 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.413 -7.475 -3.800 8.503 hybrid contribution -0.363 -0.406 0.532 0.761 sum 1.050 -7.880 -3.268 8.595 Atomic orbital electron populations 1.70941 1.07637 1.30171 1.47590 1.26919 0.96351 1.05586 0.92626 0.83035 0.74257 0.72061 0.77764 1.21012 1.20042 1.19869 1.22481 0.94544 0.92585 1.56061 0.93552 1.19181 0.88097 0.83921 0.96622 1.48067 1.45197 1.33781 1.04948 1.20142 0.96306 0.93572 0.86106 1.21263 0.98807 0.96208 0.99672 1.21790 0.92733 1.00681 0.94485 1.22482 1.01326 0.93094 1.01664 1.23371 0.93299 0.97593 0.92500 1.67725 1.05650 1.36195 1.12489 1.22669 0.97894 0.88415 0.96231 1.20925 0.80473 0.82063 0.86355 1.90559 1.36499 1.30784 1.87964 1.21587 1.01875 1.01589 0.91113 1.21434 0.95823 0.99932 0.94213 0.91437 1.21680 1.00454 1.00549 0.92886 1.22155 0.95720 1.01401 0.99282 1.22849 0.94671 0.99840 0.85446 1.87908 1.65472 1.63880 1.14936 1.22669 0.92545 0.96211 0.89351 0.92979 0.96421 0.96013 0.89871 0.89385 0.84393 0.81426 0.79577 0.83772 0.88982 0.88829 0.90614 0.91269 0.88363 0.91489 0.92624 0.87161 0.93583 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.34 13.65 21.45 0.29 -50.05 16 2 C -0.01 -0.73 5.46 84.66 0.46 -0.27 16 3 Si 1.11 45.79 29.90 68.60 2.05 47.84 16 4 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 7 C -0.62 -30.58 9.28 25.60 0.24 -30.35 16 8 H 0.05 2.36 7.81 -2.91 -0.02 2.33 16 9 C 0.24 10.82 4.28 85.63 0.37 11.19 16 10 N -0.59 -23.63 2.44 -830.48 -2.03 -25.65 16 11 C 0.16 5.80 5.56 85.63 0.48 6.27 16 12 C -0.16 -5.14 5.48 -19.78 -0.11 -5.25 16 13 C -0.07 -2.03 9.86 22.47 0.22 -1.80 16 14 C -0.17 -3.89 10.11 22.36 0.23 -3.67 16 15 C 0.09 2.21 11.18 84.69 0.95 3.16 16 16 N -0.51 -16.26 10.36 -195.85 -2.03 -18.28 16 17 C 0.10 3.54 10.86 84.67 0.92 4.46 16 18 C 0.51 20.29 7.40 87.66 0.65 20.94 16 19 O -0.58 -24.11 13.11 -3.03 -0.04 -24.15 16 20 C -0.12 -4.28 3.73 29.85 0.11 -4.17 16 21 C -0.09 -2.95 2.04 -10.70 -0.02 -2.97 16 22 H 0.07 2.30 7.96 -2.39 -0.02 2.28 16 23 C -0.12 -2.91 5.31 30.71 0.16 -2.75 16 24 C -0.15 -3.06 6.14 30.68 0.19 -2.87 16 25 C 0.05 1.08 6.84 72.01 0.49 1.58 16 26 O -0.40 -12.61 10.77 -148.98 -1.60 -14.21 16 27 C 0.07 2.26 5.84 72.01 0.42 2.68 16 28 H 0.26 14.06 7.22 -92.71 -0.67 13.39 16 29 H 0.02 0.82 7.94 -2.39 -0.02 0.80 16 30 H 0.02 1.01 6.31 -2.39 -0.02 0.99 16 31 H 0.08 2.98 7.37 -2.39 -0.02 2.97 16 32 H 0.09 3.09 8.02 -2.38 -0.02 3.07 16 33 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 34 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.19 3.14 8.06 -2.91 -0.02 3.11 16 36 H 0.14 5.17 7.62 -2.91 -0.02 5.15 16 37 H 0.09 3.13 7.40 -2.39 -0.02 3.11 16 38 H 0.09 3.51 8.00 -2.39 -0.02 3.49 16 39 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 46 H 0.09 3.31 6.01 -2.39 -0.01 3.29 16 Total: -1.00 -61.75 373.76 3.46 -58.29 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 1.06 Total: 30.03 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 5.75 Total: -3.81 kcal Atomic # 7 Polarization: -90.22 SS G_CDS: -3.76 Total: -93.98 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -1.64 Total: -38.36 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.05 Total: 47.84 kcal Total: -61.75 3.46 -58.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192960344.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.742 kcal (2) G-P(sol) polarization free energy of solvation -61.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds