Wall clock time and date at job start Tue Mar 31 2020 12:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99618 * 2 1 4 4 H 1.48493 * 109.47075 * 90.00015 * 3 2 1 5 5 H 1.48503 * 109.46690 * 209.99951 * 3 2 1 6 6 H 1.48500 * 109.47108 * 329.99279 * 3 2 1 7 7 C 1.37872 * 120.00446 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00567 * 185.52009 * 7 2 1 9 9 C 1.50701 * 119.99606 * 5.51289 * 7 2 1 10 10 N 1.46506 * 109.46807 * 182.77120 * 9 7 2 11 11 C 1.46497 * 119.99816 * 91.66012 * 10 9 7 12 12 C 1.50704 * 109.47575 * 85.26477 * 11 10 9 13 13 C 1.38231 * 119.61530 * 94.99870 * 12 11 10 14 14 C 1.38631 * 119.15964 * 179.97438 * 13 12 11 15 15 C 1.38668 * 118.42072 * 0.02562 * 14 13 12 16 16 C 1.38185 * 119.16272 * 359.97438 * 15 14 13 17 17 N 1.31849 * 119.61914 * 274.72912 * 12 11 10 18 18 C 1.34766 * 120.00182 * 271.65557 * 10 9 7 19 19 O 1.21278 * 120.00335 * 180.02562 * 18 10 9 20 20 C 1.50709 * 120.00240 * 0.02562 * 18 10 9 21 21 C 1.52997 * 109.47366 * 180.02562 * 20 18 10 22 22 H 1.09001 * 109.52147 * 305.00126 * 21 20 18 23 23 C 1.53175 * 109.52025 * 184.87609 * 21 20 18 24 24 C 1.53187 * 109.03061 * 183.17327 * 23 21 20 25 25 C 1.53097 * 109.21488 * 56.88659 * 24 23 21 26 26 O 1.42903 * 109.41378 * 302.42587 * 25 24 23 27 27 C 1.42907 * 114.10064 * 61.15231 * 26 25 24 28 28 H 0.96996 * 119.99546 * 174.99395 * 1 2 3 29 29 H 1.09003 * 109.47640 * 302.77124 * 9 7 2 30 30 H 1.09001 * 109.47364 * 62.77653 * 9 7 2 31 31 H 1.09002 * 109.46961 * 205.26827 * 11 10 9 32 32 H 1.09007 * 109.47315 * 325.26549 * 11 10 9 33 33 H 1.08001 * 120.42040 * 0.02562 * 13 12 11 34 34 H 1.07997 * 120.78799 * 180.02562 * 14 13 12 35 35 H 1.07993 * 120.41865 * 180.02562 * 15 14 13 36 36 H 1.08007 * 119.61588 * 180.02562 * 16 15 14 37 37 H 1.09002 * 109.46621 * 299.99985 * 20 18 10 38 38 H 1.08999 * 109.46726 * 59.99879 * 20 18 10 39 39 H 1.08998 * 109.54241 * 302.97841 * 23 21 20 40 40 H 1.08997 * 109.54301 * 63.24526 * 23 21 20 41 41 H 1.08997 * 109.47334 * 296.98377 * 24 23 21 42 42 H 1.08997 * 109.52776 * 176.82071 * 24 23 21 43 43 H 1.08992 * 109.48140 * 182.44267 * 25 24 23 44 44 H 1.09005 * 109.47824 * 62.40399 * 25 24 23 45 45 H 1.08998 * 109.47963 * 178.85828 * 27 26 25 46 46 H 1.09004 * 109.48467 * 58.83500 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5467 1.4403 -0.7001 6 1 1.4466 2.6527 -0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0809 -1.1961 0.0905 9 6 1.2564 -2.4961 -0.1243 10 7 2.2005 -3.6126 -0.0317 11 6 2.4864 -4.2241 1.2685 12 6 1.4477 -5.2738 1.5693 13 6 1.7033 -6.5963 1.2590 14 6 0.7414 -7.5542 1.5403 15 6 -0.4471 -7.1442 2.1254 16 6 -0.6316 -5.8040 2.4071 17 7 0.3080 -4.9208 2.1304 18 6 2.8058 -4.0771 -1.1425 19 8 3.5870 -5.0016 -1.0659 20 6 2.5121 -3.4477 -2.4800 21 6 3.3227 -4.1571 -3.5665 22 1 4.3799 -4.1403 -3.3016 23 6 3.1192 -3.4422 -4.9058 24 6 3.8711 -4.2070 -5.9996 25 6 3.3771 -5.6557 -6.0319 26 8 3.5682 -6.2514 -4.7471 27 6 2.8499 -5.6077 -3.6927 28 1 -0.4849 -0.8368 -0.0733 29 1 0.5234 -2.5725 0.6789 30 1 0.7458 -2.5310 -1.0867 31 1 3.4733 -4.6861 1.2435 32 1 2.4635 -3.4578 2.0434 33 1 2.6407 -6.8799 0.8038 34 1 0.9136 -8.5950 1.3092 35 1 -1.2183 -7.8632 2.3587 36 1 -1.5543 -5.4766 2.8632 37 1 1.4488 -3.5424 -2.7004 38 1 2.7851 -2.3928 -2.4529 39 1 2.0565 -3.4142 -5.1464 40 1 3.5061 -2.4254 -4.8389 41 1 4.9396 -4.1913 -5.7850 42 1 3.6857 -3.7374 -6.9656 43 1 3.9397 -6.2150 -6.7792 44 1 2.3173 -5.6727 -6.2864 45 1 3.0328 -6.1325 -2.7550 46 1 1.7832 -5.6242 -3.9164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193155356.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:19 Heat of formation + Delta-G solvation = -81.699218 kcal Electronic energy + Delta-G solvation = -27422.960422 eV Core-core repulsion = 23697.072047 eV Total energy + Delta-G solvation = -3725.888375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.56796 -40.86644 -39.83816 -37.04646 -35.49136 -34.86905 -33.45257 -33.17366 -32.63186 -29.38602 -28.77352 -27.01299 -25.96052 -25.03550 -24.39708 -23.83682 -22.81111 -21.08293 -20.24710 -18.99717 -18.07310 -17.71238 -17.48826 -17.19300 -17.05708 -16.79976 -16.57603 -16.06615 -15.65372 -15.63369 -15.33084 -15.02253 -14.74317 -14.44640 -14.30868 -13.98366 -13.81837 -13.61719 -13.55260 -13.42269 -13.23053 -12.86464 -12.66463 -12.55464 -12.49424 -12.14928 -11.95420 -11.93466 -11.74766 -11.29887 -11.23158 -10.88346 -10.74115 -10.54182 -10.43691 -10.39780 -10.00825 -9.52231 -8.63233 -6.41149 0.07105 0.33677 1.54442 1.61219 1.64043 1.79697 2.16375 2.55461 2.90542 2.97405 3.13816 3.30979 3.55971 3.73837 3.76839 3.81506 3.97017 4.02116 4.03030 4.13165 4.20489 4.22979 4.33311 4.42623 4.47250 4.51907 4.55881 4.68490 4.70236 4.71462 4.77309 4.81365 4.86504 4.93318 4.97629 5.06119 5.08675 5.18502 5.21704 5.25813 5.38237 5.54667 5.75789 5.83162 6.10957 6.25903 6.46992 6.59112 7.06032 7.19566 7.38508 8.71147 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007164 B = 0.006031 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3907.423464 B = 4641.349469 C = 7907.663791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.018 4.018 3 Si 1.113 2.887 4 H -0.278 1.278 5 H -0.272 1.272 6 H -0.280 1.280 7 C -0.619 4.619 8 H 0.046 0.954 9 C 0.246 3.754 10 N -0.587 5.587 11 C 0.167 3.833 12 C 0.095 3.905 13 C -0.161 4.161 14 C -0.076 4.076 15 C -0.162 4.162 16 C 0.080 3.920 17 N -0.509 5.509 18 C 0.513 3.487 19 O -0.576 6.576 20 C -0.121 4.121 21 C -0.096 4.096 22 H 0.066 0.934 23 C -0.119 4.119 24 C -0.149 4.149 25 C 0.050 3.950 26 O -0.402 6.402 27 C 0.071 3.929 28 H 0.258 0.742 29 H 0.016 0.984 30 H 0.018 0.982 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.135 0.865 34 H 0.168 0.832 35 H 0.173 0.827 36 H 0.174 0.826 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.057 0.943 45 H 0.089 0.911 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.525 -13.158 -5.980 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.218 4.218 3 Si 0.935 3.065 4 H -0.204 1.204 5 H -0.197 1.197 6 H -0.205 1.205 7 C -0.657 4.657 8 H 0.064 0.936 9 C 0.125 3.875 10 N -0.317 5.317 11 C 0.043 3.957 12 C -0.043 4.043 13 C -0.182 4.182 14 C -0.102 4.102 15 C -0.182 4.182 16 C -0.078 4.078 17 N -0.219 5.219 18 C 0.303 3.697 19 O -0.458 6.458 20 C -0.161 4.161 21 C -0.115 4.115 22 H 0.085 0.915 23 C -0.156 4.156 24 C -0.186 4.186 25 C -0.027 4.027 26 O -0.321 6.321 27 C -0.006 4.006 28 H 0.068 0.932 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.153 0.847 34 H 0.185 0.815 35 H 0.191 0.809 36 H 0.191 0.809 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.129 0.871 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.709 -11.262 -5.638 12.710 hybrid contribution -0.085 -1.872 0.194 1.884 sum 1.624 -13.134 -5.444 14.310 Atomic orbital electron populations 1.70885 1.07685 1.30362 1.47432 1.27070 0.96360 1.05851 0.92542 0.82971 0.74277 0.71655 0.77602 1.20429 1.19686 1.20541 1.22496 0.94893 0.92753 1.55560 0.93595 1.19132 0.88329 0.83880 0.96183 1.47990 1.43981 1.33467 1.06245 1.20118 0.95994 0.93831 0.85753 1.21564 0.93372 0.93941 0.95446 1.22150 1.01861 0.93352 1.00818 1.21998 0.92506 1.00996 0.94724 1.22532 0.99031 0.97343 0.99273 1.23282 0.97670 0.90371 0.96452 1.67491 1.01982 1.40329 1.12069 1.20955 0.79520 0.82470 0.86751 1.90541 1.37298 1.30780 1.87177 1.21592 1.01984 1.01596 0.90943 1.21449 0.99869 0.95620 0.94570 0.91508 1.21677 1.01409 0.99462 0.93064 1.22162 1.00567 0.96063 0.99829 1.22841 1.01112 0.93905 0.84795 1.87912 1.71178 1.55628 1.17373 1.22659 0.94502 0.92585 0.90810 0.93203 0.96575 0.96387 0.88499 0.90831 0.84675 0.81493 0.80914 0.80940 0.89245 0.88682 0.91060 0.90932 0.91609 0.88397 0.87146 0.92435 0.89342 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.90 13.65 21.45 0.29 -53.60 16 2 C -0.02 -1.00 5.45 84.65 0.46 -0.54 16 3 Si 1.11 48.38 29.91 68.60 2.05 50.43 16 4 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.62 -33.10 9.11 25.60 0.23 -32.87 16 8 H 0.05 2.50 7.82 -2.91 -0.02 2.48 16 9 C 0.25 12.16 4.34 85.63 0.37 12.53 16 10 N -0.59 -25.57 2.44 -830.47 -2.03 -27.60 16 11 C 0.17 6.70 5.76 85.63 0.49 7.19 16 12 C 0.09 3.45 6.36 42.56 0.27 3.72 16 13 C -0.16 -4.89 9.72 22.36 0.22 -4.67 16 14 C -0.08 -1.75 10.18 22.47 0.23 -1.52 16 15 C -0.16 -3.47 10.11 22.36 0.23 -3.25 16 16 C 0.08 2.22 11.18 84.67 0.95 3.17 16 17 N -0.51 -18.89 10.27 -183.87 -1.89 -20.78 16 18 C 0.51 21.04 7.40 87.66 0.65 21.68 16 19 O -0.58 -24.22 13.49 -3.02 -0.04 -24.26 16 20 C -0.12 -4.37 3.76 29.85 0.11 -4.26 16 21 C -0.10 -2.97 2.03 -10.71 -0.02 -2.99 16 22 H 0.07 2.31 7.96 -2.39 -0.02 2.29 16 23 C -0.12 -2.93 5.32 30.72 0.16 -2.76 16 24 C -0.15 -3.01 6.13 30.69 0.19 -2.82 16 25 C 0.05 1.05 6.84 72.01 0.49 1.54 16 26 O -0.40 -11.87 10.77 -148.98 -1.60 -13.47 16 27 C 0.07 2.20 5.84 72.01 0.42 2.62 16 28 H 0.26 15.18 7.19 -92.71 -0.67 14.51 16 29 H 0.02 0.88 7.71 -2.39 -0.02 0.86 16 30 H 0.02 0.91 6.51 -2.39 -0.02 0.89 16 31 H 0.10 3.68 7.18 -2.39 -0.02 3.67 16 32 H 0.07 3.15 8.11 -2.38 -0.02 3.14 16 33 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 34 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.17 3.86 8.06 -2.91 -0.02 3.84 16 37 H 0.09 3.12 7.40 -2.39 -0.02 3.10 16 38 H 0.09 3.69 7.85 -2.39 -0.02 3.67 16 39 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 45 H 0.09 3.14 6.02 -2.39 -0.01 3.13 16 46 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -67.57 374.36 3.30 -64.27 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 1.06 Total: 28.24 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 5.45 Total: -3.22 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -3.62 Total: -101.98 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -1.64 Total: -37.73 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.05 Total: 50.43 kcal Total: -67.57 3.30 -64.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193155356.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.431 kcal (2) G-P(sol) polarization free energy of solvation -67.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds