Wall clock time and date at job start Tue Mar 31 2020 12:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00023 * 2 1 4 4 H 1.48500 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46920 * 299.99858 * 3 2 1 6 6 H 1.48497 * 109.47145 * 59.99832 * 3 2 1 7 7 C 1.37880 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00572 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99744 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47045 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99896 * 269.99656 * 10 9 7 12 12 C 1.50699 * 109.47398 * 270.00022 * 11 10 9 13 13 C 1.38230 * 119.61849 * 94.99755 * 12 11 10 14 14 C 1.38624 * 119.16371 * 179.97438 * 13 12 11 15 15 C 1.38674 * 118.41799 * 0.02562 * 14 13 12 16 16 C 1.38182 * 119.16574 * 359.97438 * 15 14 13 17 17 N 1.31852 * 119.61681 * 274.73106 * 12 11 10 18 18 C 1.34777 * 119.99832 * 90.00120 * 10 9 7 19 19 O 1.21278 * 119.99854 * 180.02562 * 18 10 9 20 20 C 1.50703 * 120.00161 * 359.97438 * 18 10 9 21 21 C 1.53000 * 109.46912 * 180.02562 * 20 18 10 22 22 H 1.08993 * 109.52593 * 54.87190 * 21 20 18 23 23 C 1.53183 * 109.52097 * 175.00407 * 21 20 18 24 24 C 1.53174 * 109.03497 * 176.88641 * 23 21 20 25 25 C 1.53095 * 109.16216 * 303.01332 * 24 23 21 26 26 O 1.42896 * 109.41306 * 57.61228 * 25 24 23 27 27 C 1.42905 * 114.10243 * 298.84081 * 26 25 24 28 28 H 0.96999 * 119.99877 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47617 * 59.99831 * 9 7 2 30 30 H 1.09000 * 109.47073 * 299.99588 * 9 7 2 31 31 H 1.09000 * 109.47082 * 30.00019 * 11 10 9 32 32 H 1.09004 * 109.46754 * 150.00286 * 11 10 9 33 33 H 1.07999 * 120.41854 * 0.02562 * 13 12 11 34 34 H 1.07994 * 120.79094 * 179.97438 * 14 13 12 35 35 H 1.08001 * 120.42280 * 180.02562 * 15 14 13 36 36 H 1.08001 * 119.62108 * 180.02562 * 16 15 14 37 37 H 1.09002 * 109.47152 * 60.00245 * 20 18 10 38 38 H 1.09001 * 109.46980 * 300.00345 * 20 18 10 39 39 H 1.09001 * 109.53771 * 296.75059 * 23 21 20 40 40 H 1.08998 * 109.54572 * 57.01517 * 23 21 20 41 41 H 1.08994 * 109.52637 * 62.92288 * 24 23 21 42 42 H 1.09001 * 109.52252 * 183.04779 * 24 23 21 43 43 H 1.08997 * 109.47699 * 177.59474 * 25 24 23 44 44 H 1.08996 * 109.47842 * 297.61877 * 25 24 23 45 45 H 1.09003 * 109.47529 * 301.17839 * 27 26 25 46 46 H 1.08991 * 109.48625 * 181.14376 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6791 -4.1695 -1.2682 12 6 1.7624 -5.2837 -1.7032 13 6 0.7317 -5.0157 -2.5844 14 6 -0.1056 -6.0477 -2.9787 15 6 0.1259 -7.3166 -2.4692 16 6 1.1762 -7.5087 -1.5921 17 7 1.9560 -6.5040 -1.2429 18 6 2.6410 -4.1249 1.1678 19 8 3.4295 -5.0464 1.1678 20 6 2.1518 -3.5518 2.4729 21 6 2.7983 -4.3072 3.6358 22 1 3.8826 -4.2827 3.5282 23 6 2.4000 -3.6471 4.9594 24 6 2.9887 -4.4570 6.1186 25 6 2.4985 -5.9041 6.0205 26 8 2.8750 -6.4482 4.7540 27 6 2.3154 -5.7600 3.6335 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5572 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.6868 -3.3878 -2.0278 32 1 3.6885 -4.5595 -1.1378 33 1 0.5811 -4.0149 -2.9616 34 1 -0.9192 -5.8678 -3.6656 35 1 -0.5062 -8.1443 -2.7549 36 1 1.3634 -8.4940 -1.1911 37 1 1.0681 -3.6535 2.5308 38 1 2.4214 -2.4972 2.5304 39 1 2.7894 -2.6294 4.9909 40 1 1.3135 -3.6260 5.0441 41 1 4.0769 -4.4365 6.0617 42 1 2.6653 -4.0254 7.0658 43 1 2.9482 -6.4950 6.8183 44 1 1.4132 -5.9275 6.1183 45 1 1.2276 -5.7817 3.7000 46 1 2.6332 -6.2473 2.7119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193155372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:23 Heat of formation + Delta-G solvation = -61.282171 kcal Electronic energy + Delta-G solvation = -27391.025320 eV Core-core repulsion = 23666.022295 eV Total energy + Delta-G solvation = -3725.003025 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.08698 -39.49994 -38.36280 -35.17394 -34.06813 -32.88645 -32.18339 -31.85354 -31.30304 -27.97902 -27.32414 -25.58644 -24.73243 -23.36555 -22.90012 -22.53247 -21.50024 -19.83796 -18.27607 -16.89149 -16.54643 -16.18763 -15.98287 -15.96600 -15.58213 -15.46103 -15.23728 -14.72119 -14.46971 -14.13443 -14.02701 -13.54421 -13.23396 -13.05192 -12.81278 -12.44603 -12.38808 -12.16088 -12.07297 -11.71691 -11.59442 -11.34577 -11.19974 -11.01433 -10.95101 -10.86119 -10.59087 -10.45487 -10.22621 -10.05256 -9.79118 -9.64842 -9.19804 -9.11843 -9.00653 -8.71448 -8.56619 -7.74692 -6.23398 -4.31021 1.30496 1.52432 3.17962 3.27271 3.31155 3.47805 3.77430 4.13352 4.26055 4.33952 4.61901 4.94157 4.96509 5.00654 5.01667 5.05100 5.09815 5.19335 5.25871 5.35817 5.38505 5.48656 5.64595 5.65805 5.79281 5.83886 5.87318 5.94699 5.96725 5.99669 6.05112 6.14933 6.24195 6.24436 6.35843 6.39637 6.48316 6.57256 6.65125 6.74486 6.92841 7.13891 7.44991 7.51167 7.72142 8.00867 8.29210 8.37111 8.76200 9.07541 9.37867 10.83113 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007065 B = 0.006102 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3962.024849 B = 4587.563407 C = 7924.225553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.238 3.762 10 N -0.593 5.593 11 C 0.167 3.833 12 C 0.121 3.879 13 C -0.157 4.157 14 C -0.081 4.081 15 C -0.183 4.183 16 C 0.092 3.908 17 N -0.458 5.458 18 C 0.516 3.484 19 O -0.551 6.551 20 C -0.128 4.128 21 C -0.103 4.103 22 H 0.084 0.916 23 C -0.119 4.119 24 C -0.154 4.154 25 C 0.058 3.942 26 O -0.383 6.383 27 C 0.064 3.936 28 H 0.265 0.735 29 H 0.034 0.966 30 H 0.038 0.962 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.150 0.850 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.045 0.955 45 H 0.038 0.962 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.783 -9.588 2.414 9.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.118 3.882 10 N -0.324 5.324 11 C 0.043 3.957 12 C -0.018 4.018 13 C -0.177 4.177 14 C -0.107 4.107 15 C -0.203 4.203 16 C -0.066 4.066 17 N -0.167 5.167 18 C 0.305 3.695 19 O -0.431 6.431 20 C -0.168 4.168 21 C -0.122 4.122 22 H 0.102 0.898 23 C -0.157 4.157 24 C -0.192 4.192 25 C -0.019 4.019 26 O -0.302 6.302 27 C -0.013 4.013 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.167 0.833 37 H 0.104 0.896 38 H 0.124 0.876 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.278 -10.223 2.970 10.650 hybrid contribution -0.862 1.604 -0.674 1.942 sum -0.584 -8.619 2.295 8.939 Atomic orbital electron populations 1.69932 1.06018 1.27213 1.49773 1.24938 0.94822 0.99274 0.94713 0.86482 0.80215 0.83284 0.77770 1.19597 1.20864 1.20837 1.21548 0.93713 0.90387 1.51941 0.91900 1.19438 0.87519 0.82605 0.98614 1.48162 1.45965 1.34603 1.03664 1.20107 0.96399 0.91830 0.87373 1.21921 0.94859 0.92814 0.92223 1.22120 0.95949 1.00513 0.99120 1.21539 0.98254 0.92773 0.98134 1.22087 1.00069 0.97962 1.00161 1.22771 0.91302 0.98083 0.94406 1.67658 1.27467 0.99635 1.21961 1.20506 0.80993 0.82320 0.85716 1.90610 1.35435 1.29465 1.87546 1.21621 1.01490 1.02243 0.91447 1.21527 1.01933 0.95321 0.93463 0.89756 1.21664 1.00760 0.99355 0.93896 1.22171 1.01769 0.96378 0.98842 1.22531 0.98695 0.93964 0.86724 1.87947 1.73123 1.55287 1.13803 1.22900 0.96132 0.92436 0.89786 0.92574 0.94810 0.94434 0.88877 0.89150 0.84527 0.85184 0.85378 0.83292 0.89617 0.87576 0.91217 0.91861 0.91160 0.91287 0.89537 0.93669 0.94348 0.86664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.73 13.29 55.43 0.74 -22.99 16 2 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 19.94 29.54 -169.99 -5.02 14.92 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -13.36 9.28 -34.44 -0.32 -13.68 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.24 5.42 4.97 -5.19 -0.03 5.39 16 10 N -0.59 -12.22 2.44 -176.43 -0.43 -12.65 16 11 C 0.17 3.13 5.71 -5.20 -0.03 3.10 16 12 C 0.12 2.12 6.36 -82.59 -0.53 1.60 16 13 C -0.16 -2.40 9.72 -39.44 -0.38 -2.78 16 14 C -0.08 -1.05 10.18 -39.28 -0.40 -1.45 16 15 C -0.18 -2.25 10.11 -39.44 -0.40 -2.65 16 16 C 0.09 1.33 11.18 -17.55 -0.20 1.13 16 17 N -0.46 -8.20 10.27 -9.47 -0.10 -8.30 16 18 C 0.52 10.58 7.40 -10.98 -0.08 10.50 16 19 O -0.55 -12.15 13.57 5.56 0.08 -12.07 16 20 C -0.13 -2.31 3.73 -27.88 -0.10 -2.42 16 21 C -0.10 -1.68 2.03 -90.48 -0.18 -1.86 16 22 H 0.08 1.50 7.95 -51.93 -0.41 1.09 16 23 C -0.12 -1.62 5.31 -26.55 -0.14 -1.76 16 24 C -0.15 -1.83 6.14 -26.59 -0.16 -1.99 16 25 C 0.06 0.72 6.84 37.21 0.25 0.98 16 26 O -0.38 -6.23 10.76 -35.23 -0.38 -6.61 16 27 C 0.06 1.06 5.84 37.21 0.22 1.28 16 28 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 30 H 0.04 0.89 6.44 -51.93 -0.33 0.56 16 31 H 0.09 1.63 7.97 -51.93 -0.41 1.21 16 32 H 0.09 1.75 7.42 -51.93 -0.39 1.37 16 33 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 34 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.09 1.51 7.40 -51.93 -0.38 1.13 16 38 H 0.11 2.01 8.00 -51.93 -0.42 1.59 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.12 2.21 6.04 -51.93 -0.31 1.89 16 LS Contribution 376.11 15.07 5.67 5.67 Total: -1.00 -29.51 376.11 -9.30 -38.81 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -7.28 Total: 6.27 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -2.58 Total: -3.05 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.21 Total: -43.94 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.30 Total: -18.68 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.51 -9.30 -38.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193155372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.470 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds