Wall clock time and date at job start Tue Mar 31 2020 12:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00023 * 2 1 4 4 H 1.48500 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46920 * 299.99858 * 3 2 1 6 6 H 1.48497 * 109.47145 * 59.99832 * 3 2 1 7 7 C 1.37880 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00572 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99744 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47045 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99896 * 269.99656 * 10 9 7 12 12 C 1.50699 * 109.47398 * 270.00022 * 11 10 9 13 13 C 1.38230 * 119.61849 * 94.99755 * 12 11 10 14 14 C 1.38624 * 119.16371 * 179.97438 * 13 12 11 15 15 C 1.38674 * 118.41799 * 0.02562 * 14 13 12 16 16 C 1.38182 * 119.16574 * 359.97438 * 15 14 13 17 17 N 1.31852 * 119.61681 * 274.73106 * 12 11 10 18 18 C 1.34777 * 119.99832 * 90.00120 * 10 9 7 19 19 O 1.21278 * 119.99854 * 180.02562 * 18 10 9 20 20 C 1.50703 * 120.00161 * 359.97438 * 18 10 9 21 21 C 1.53000 * 109.46912 * 180.02562 * 20 18 10 22 22 H 1.08993 * 109.52593 * 54.87190 * 21 20 18 23 23 C 1.53183 * 109.52097 * 175.00407 * 21 20 18 24 24 C 1.53174 * 109.03497 * 176.88641 * 23 21 20 25 25 C 1.53095 * 109.16216 * 303.01332 * 24 23 21 26 26 O 1.42896 * 109.41306 * 57.61228 * 25 24 23 27 27 C 1.42905 * 114.10243 * 298.84081 * 26 25 24 28 28 H 0.96999 * 119.99877 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47617 * 59.99831 * 9 7 2 30 30 H 1.09000 * 109.47073 * 299.99588 * 9 7 2 31 31 H 1.09000 * 109.47082 * 30.00019 * 11 10 9 32 32 H 1.09004 * 109.46754 * 150.00286 * 11 10 9 33 33 H 1.07999 * 120.41854 * 0.02562 * 13 12 11 34 34 H 1.07994 * 120.79094 * 179.97438 * 14 13 12 35 35 H 1.08001 * 120.42280 * 180.02562 * 15 14 13 36 36 H 1.08001 * 119.62108 * 180.02562 * 16 15 14 37 37 H 1.09002 * 109.47152 * 60.00245 * 20 18 10 38 38 H 1.09001 * 109.46980 * 300.00345 * 20 18 10 39 39 H 1.09001 * 109.53771 * 296.75059 * 23 21 20 40 40 H 1.08998 * 109.54572 * 57.01517 * 23 21 20 41 41 H 1.08994 * 109.52637 * 62.92288 * 24 23 21 42 42 H 1.09001 * 109.52252 * 183.04779 * 24 23 21 43 43 H 1.08997 * 109.47699 * 177.59474 * 25 24 23 44 44 H 1.08996 * 109.47842 * 297.61877 * 25 24 23 45 45 H 1.09003 * 109.47529 * 301.17839 * 27 26 25 46 46 H 1.08991 * 109.48625 * 181.14376 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6791 -4.1695 -1.2682 12 6 1.7624 -5.2837 -1.7032 13 6 0.7317 -5.0157 -2.5844 14 6 -0.1056 -6.0477 -2.9787 15 6 0.1259 -7.3166 -2.4692 16 6 1.1762 -7.5087 -1.5921 17 7 1.9560 -6.5040 -1.2429 18 6 2.6410 -4.1249 1.1678 19 8 3.4295 -5.0464 1.1678 20 6 2.1518 -3.5518 2.4729 21 6 2.7983 -4.3072 3.6358 22 1 3.8826 -4.2827 3.5282 23 6 2.4000 -3.6471 4.9594 24 6 2.9887 -4.4570 6.1186 25 6 2.4985 -5.9041 6.0205 26 8 2.8750 -6.4482 4.7540 27 6 2.3154 -5.7600 3.6335 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5572 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.6868 -3.3878 -2.0278 32 1 3.6885 -4.5595 -1.1378 33 1 0.5811 -4.0149 -2.9616 34 1 -0.9192 -5.8678 -3.6656 35 1 -0.5062 -8.1443 -2.7549 36 1 1.3634 -8.4940 -1.1911 37 1 1.0681 -3.6535 2.5308 38 1 2.4214 -2.4972 2.5304 39 1 2.7894 -2.6294 4.9909 40 1 1.3135 -3.6260 5.0441 41 1 4.0769 -4.4365 6.0617 42 1 2.6653 -4.0254 7.0658 43 1 2.9482 -6.4950 6.8183 44 1 1.4132 -5.9275 6.1183 45 1 1.2276 -5.7817 3.7000 46 1 2.6332 -6.2473 2.7119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193155372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:22 Heat of formation + Delta-G solvation = -77.606661 kcal Electronic energy + Delta-G solvation = -27391.733203 eV Core-core repulsion = 23666.022295 eV Total energy + Delta-G solvation = -3725.710908 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.42850 -40.77539 -39.74378 -36.83810 -35.40069 -34.66393 -33.39998 -33.08005 -32.56579 -29.47410 -28.99645 -26.99737 -25.92367 -24.94654 -24.26884 -23.76074 -22.72298 -21.03903 -19.89193 -18.67552 -17.97231 -17.55819 -17.33141 -17.24344 -16.89388 -16.84400 -16.49479 -16.26055 -15.96055 -15.41968 -15.26253 -14.88262 -14.49016 -14.32536 -14.22092 -13.91861 -13.69372 -13.54380 -13.48353 -13.32926 -13.08481 -12.74763 -12.72843 -12.55036 -12.50598 -12.13040 -12.08257 -11.89198 -11.70637 -11.66975 -11.22216 -10.78961 -10.66878 -10.49828 -10.36203 -10.33039 -9.91928 -9.44142 -8.19484 -6.33671 0.15499 0.42266 1.40903 1.45259 1.55037 1.83582 2.28498 2.45122 2.97240 3.04045 3.10996 3.41883 3.65071 3.81087 3.85034 3.88219 4.03078 4.05350 4.09608 4.20625 4.27172 4.28949 4.38794 4.52073 4.54867 4.61517 4.62563 4.75375 4.79493 4.82458 4.85254 4.88030 4.94088 5.01401 5.10282 5.12036 5.20156 5.25529 5.29948 5.31043 5.42142 5.66926 5.82306 5.84810 6.06915 6.29522 6.59066 6.82871 7.16184 7.33790 7.46483 8.86124 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007065 B = 0.006102 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3962.024849 B = 4587.563407 C = 7924.225553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.026 3.974 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.052 0.948 9 C 0.256 3.744 10 N -0.595 5.595 11 C 0.168 3.832 12 C 0.096 3.904 13 C -0.167 4.167 14 C -0.077 4.077 15 C -0.165 4.165 16 C 0.077 3.923 17 N -0.498 5.498 18 C 0.509 3.491 19 O -0.570 6.570 20 C -0.120 4.120 21 C -0.096 4.096 22 H 0.063 0.937 23 C -0.117 4.117 24 C -0.149 4.149 25 C 0.049 3.951 26 O -0.404 6.404 27 C 0.073 3.927 28 H 0.268 0.732 29 H 0.023 0.977 30 H 0.027 0.973 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.165 0.835 35 H 0.170 0.830 36 H 0.171 0.829 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.058 0.942 45 H 0.047 0.953 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.019 -9.948 2.930 10.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.174 4.174 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.070 0.930 9 C 0.136 3.864 10 N -0.326 5.326 11 C 0.044 3.956 12 C -0.042 4.042 13 C -0.187 4.187 14 C -0.103 4.103 15 C -0.185 4.185 16 C -0.080 4.080 17 N -0.207 5.207 18 C 0.298 3.702 19 O -0.450 6.450 20 C -0.160 4.160 21 C -0.115 4.115 22 H 0.082 0.918 23 C -0.155 4.155 24 C -0.186 4.186 25 C -0.027 4.027 26 O -0.323 6.323 27 C -0.004 4.004 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.045 0.955 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.183 0.817 35 H 0.188 0.812 36 H 0.188 0.812 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.117 0.883 43 H 0.128 0.872 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.951 -10.586 3.482 11.185 hybrid contribution -0.497 1.600 -0.864 1.885 sum -1.448 -8.986 2.618 9.471 Atomic orbital electron populations 1.70009 1.07116 1.28080 1.50496 1.25575 0.95488 1.02019 0.94352 0.85572 0.78852 0.79764 0.77879 1.19748 1.20423 1.20328 1.21679 0.93269 0.91481 1.51789 0.92963 1.19073 0.87354 0.82603 0.97406 1.48162 1.45578 1.34194 1.04624 1.20102 0.96155 0.92670 0.86678 1.21633 0.95958 0.92520 0.94106 1.22202 0.96005 1.01527 0.98991 1.21969 0.98201 0.92217 0.97940 1.22510 0.99037 0.98923 0.98031 1.23264 0.91629 0.98154 0.94955 1.67550 1.29372 1.00429 1.23390 1.20946 0.80725 0.82089 0.86409 1.90598 1.36289 1.30282 1.87860 1.21578 1.01732 1.01632 0.91009 1.21441 1.00388 0.95344 0.94344 0.91817 1.21672 1.01459 0.99551 0.92801 1.22160 1.01342 0.95821 0.99301 1.22839 0.99832 0.94610 0.85406 1.87911 1.73531 1.55858 1.14979 1.22626 0.96410 0.92116 0.89212 0.92320 0.95919 0.95491 0.88507 0.90766 0.84472 0.81726 0.81217 0.81152 0.89200 0.88542 0.90855 0.90963 0.91723 0.88326 0.87216 0.92412 0.93455 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.92 13.29 21.45 0.28 -48.64 16 2 C 0.03 1.34 5.46 84.66 0.46 1.80 16 3 Si 0.95 40.81 29.54 68.60 2.03 42.84 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.54 -27.53 9.28 25.60 0.24 -27.29 16 8 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 9 C 0.26 12.02 4.97 85.63 0.43 12.45 16 10 N -0.59 -25.64 2.44 -830.50 -2.03 -27.66 16 11 C 0.17 6.63 5.71 85.63 0.49 7.12 16 12 C 0.10 3.47 6.36 42.55 0.27 3.74 16 13 C -0.17 -5.07 9.72 22.36 0.22 -4.86 16 14 C -0.08 -1.82 10.18 22.47 0.23 -1.59 16 15 C -0.17 -3.60 10.11 22.36 0.23 -3.38 16 16 C 0.08 2.15 11.18 84.67 0.95 3.10 16 17 N -0.50 -18.20 10.27 -183.88 -1.89 -20.09 16 18 C 0.51 21.85 7.40 87.66 0.65 22.50 16 19 O -0.57 -26.48 13.57 -3.02 -0.04 -26.52 16 20 C -0.12 -4.46 3.73 29.85 0.11 -4.35 16 21 C -0.10 -3.17 2.03 -10.70 -0.02 -3.19 16 22 H 0.06 2.35 7.95 -2.39 -0.02 2.33 16 23 C -0.12 -3.04 5.31 30.71 0.16 -2.88 16 24 C -0.15 -3.21 6.14 30.68 0.19 -3.03 16 25 C 0.05 1.13 6.84 72.01 0.49 1.62 16 26 O -0.40 -12.95 10.76 -148.98 -1.60 -14.56 16 27 C 0.07 2.47 5.84 72.01 0.42 2.89 16 28 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 29 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 30 H 0.03 1.32 6.44 -2.39 -0.02 1.31 16 31 H 0.10 3.60 7.97 -2.39 -0.02 3.58 16 32 H 0.07 3.10 7.42 -2.39 -0.02 3.08 16 33 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 34 H 0.17 2.69 8.06 -2.91 -0.02 2.66 16 35 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 36 H 0.17 3.77 8.06 -2.91 -0.02 3.74 16 37 H 0.09 3.24 7.40 -2.39 -0.02 3.23 16 38 H 0.10 3.77 8.00 -2.39 -0.02 3.75 16 39 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.08 3.37 6.04 -2.39 -0.01 3.35 16 Total: -1.00 -65.00 376.11 3.21 -61.79 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.96 Total: 28.18 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 5.51 Total: 4.65 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -3.63 Total: -96.38 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -1.64 Total: -41.07 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -65.00 3.21 -61.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193155372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.820 kcal (2) G-P(sol) polarization free energy of solvation -65.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds