Wall clock time and date at job start Tue Mar 31 2020 12:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38233 * 120.00284 * 2 1 4 4 C 1.38237 * 119.99951 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00017 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99918 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47134 * 89.99322 * 6 5 4 8 8 C 1.50700 * 109.46801 * 180.02562 * 7 6 5 9 9 O 1.21285 * 120.00083 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99715 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99535 * 179.97438 * 10 8 7 12 12 C 1.50709 * 109.46698 * 179.97438 * 11 10 8 13 13 O 1.21283 * 119.99688 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99796 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99943 * 180.02562 * 14 12 11 16 16 H 1.09007 * 109.47078 * 34.99474 * 15 14 12 17 17 C 1.53000 * 109.47021 * 275.00054 * 15 14 12 18 18 C 1.50694 * 109.47115 * 154.99835 * 15 14 12 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.38238 * 120.00006 * 0.24636 * 5 4 3 27 27 C 1.38232 * 119.99828 * 359.47702 * 26 5 4 28 28 H 1.09001 * 109.46627 * 90.00373 * 1 2 3 29 29 H 1.08998 * 109.47284 * 210.00039 * 1 2 3 30 30 H 1.08998 * 109.46922 * 330.00281 * 1 2 3 31 31 H 1.08000 * 119.99736 * 359.97343 * 3 2 1 32 32 H 1.07995 * 119.99468 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.46746 * 329.99799 * 6 5 4 34 34 H 1.09000 * 109.46873 * 209.99380 * 6 5 4 35 35 H 1.09000 * 109.46981 * 60.00034 * 7 6 5 36 36 H 1.08995 * 109.47392 * 300.00258 * 7 6 5 37 37 H 0.96996 * 120.00212 * 0.02562 * 10 8 7 38 38 H 1.08998 * 109.46684 * 60.00783 * 11 10 8 39 39 H 1.08995 * 109.47767 * 300.00372 * 11 10 8 40 40 H 0.96997 * 119.99849 * 0.02562 * 14 12 11 41 41 H 1.09002 * 109.47106 * 299.99878 * 17 15 14 42 42 H 1.08998 * 109.47089 * 59.99825 * 17 15 14 43 43 H 1.08995 * 109.47131 * 179.97438 * 17 15 14 44 44 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 45 45 H 1.08000 * 119.99683 * 179.73291 * 26 5 4 46 46 H 1.07997 * 120.00186 * 180.27376 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0002 0.0005 6 6 5.7788 -0.0002 0.0005 7 6 6.2888 -0.0001 1.4431 8 6 7.7958 0.0005 1.4430 9 8 8.4022 0.0003 0.3926 10 7 8.4697 0.0002 2.6102 11 6 9.9347 0.0002 2.6101 12 6 10.4371 0.0005 4.0309 13 8 9.6489 0.0002 4.9528 14 7 11.7622 0.0010 4.2772 15 6 12.2506 0.0007 5.6583 16 1 11.5782 -0.5893 6.2813 17 6 12.3013 1.4376 6.1816 18 6 13.6323 -0.5991 5.7024 19 1 14.0998 -0.9458 4.7927 20 6 14.2993 -0.7062 6.9044 21 7 13.7299 -0.2844 8.0123 22 14 16.0118 -1.4504 6.9591 23 1 16.5069 -1.4506 8.3592 24 1 15.9620 -2.8448 6.4510 25 1 16.9281 -0.6467 6.1107 26 6 3.5805 -1.1973 -0.0051 27 6 2.1982 -1.1972 0.0001 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6583 2.1324 -0.0004 32 1 4.1206 2.1323 0.0001 33 1 6.1421 0.8897 -0.5133 34 1 6.1420 -0.8903 -0.5132 35 1 5.9254 -0.8900 1.9570 36 1 5.9255 0.8899 1.9568 37 1 7.9848 -0.0008 3.4502 38 1 10.2979 0.8904 2.0965 39 1 10.2981 -0.8895 2.0960 40 1 12.3924 0.0016 3.5399 41 1 12.9736 2.0276 5.5587 42 1 11.3019 1.8714 6.1497 43 1 12.6642 1.4373 7.2094 44 1 14.1990 -0.3601 8.8579 45 1 4.1205 -2.1326 -0.0095 46 1 1.6581 -2.1325 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194621909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:56 Heat of formation + Delta-G solvation = -94.334827 kcal Electronic energy + Delta-G solvation = -24809.547625 eV Core-core repulsion = 21083.111329 eV Total energy + Delta-G solvation = -3726.436296 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.22884 -40.46788 -39.97245 -36.87999 -35.61776 -35.33676 -34.37145 -32.30742 -31.77063 -31.27004 -29.04596 -27.44359 -27.26972 -24.47281 -23.57534 -23.01562 -21.61814 -21.35653 -21.14155 -19.26330 -18.21244 -17.52391 -17.15707 -17.09666 -16.76841 -16.55985 -16.47129 -15.93392 -15.81876 -15.63836 -14.90758 -14.59495 -14.50226 -14.41229 -14.22229 -14.11388 -13.75323 -13.61881 -13.42829 -13.31508 -13.01812 -12.98016 -12.84402 -12.73304 -12.42573 -12.27382 -12.16569 -12.10449 -11.88458 -11.68183 -11.13334 -11.03434 -10.88449 -10.59291 -10.22967 -9.81044 -9.78762 -9.34880 -8.18135 -6.35412 0.43237 0.54030 1.45980 1.47343 1.55069 1.57877 1.67822 1.93423 2.39101 2.66990 2.87762 3.12643 3.63415 3.84344 3.92570 4.03046 4.12188 4.18723 4.20821 4.29123 4.34806 4.42853 4.52630 4.63441 4.69201 4.74645 4.84679 4.85425 4.91770 4.97835 4.99608 5.08114 5.15591 5.25678 5.26296 5.35489 5.42411 5.55896 5.57192 5.66850 5.75105 5.77074 5.87259 6.08661 6.17339 6.47299 6.71308 6.83966 7.16865 7.29134 7.44642 8.87744 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.034360 B = 0.001709 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.709878 B =16383.682468 C =16595.190397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.102 4.102 3 C -0.130 4.130 4 C -0.122 4.122 5 C -0.097 4.097 6 C -0.057 4.057 7 C -0.125 4.125 8 C 0.516 3.484 9 O -0.578 6.578 10 N -0.716 5.716 11 C 0.109 3.891 12 C 0.497 3.503 13 O -0.590 6.590 14 N -0.699 5.699 15 C 0.270 3.730 16 H 0.004 0.996 17 C -0.134 4.134 18 C -0.550 4.550 19 H 0.074 0.926 20 C 0.016 3.984 21 N -0.916 5.916 22 Si 0.971 3.029 23 H -0.287 1.287 24 H -0.271 1.271 25 H -0.265 1.265 26 C -0.122 4.122 27 C -0.130 4.130 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.415 0.585 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.408 0.592 41 H 0.040 0.960 42 H 0.015 0.985 43 H 0.067 0.933 44 H 0.266 0.734 45 H 0.130 0.870 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.128 1.145 -17.123 28.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.102 4.102 3 C -0.147 4.147 4 C -0.140 4.140 5 C -0.097 4.097 6 C -0.095 4.095 7 C -0.165 4.165 8 C 0.304 3.696 9 O -0.458 6.458 10 N -0.371 5.371 11 C -0.018 4.018 12 C 0.284 3.716 13 O -0.472 6.472 14 N -0.348 5.348 15 C 0.166 3.834 16 H 0.022 0.978 17 C -0.193 4.193 18 C -0.588 4.588 19 H 0.092 0.908 20 C -0.184 4.184 21 N -0.554 5.554 22 Si 0.796 3.204 23 H -0.212 1.212 24 H -0.196 1.196 25 H -0.190 1.190 26 C -0.140 4.140 27 C -0.148 4.148 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.253 0.747 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.243 0.757 41 H 0.059 0.941 42 H 0.034 0.966 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.148 0.852 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.183 1.164 -16.989 27.966 hybrid contribution 1.145 -0.312 0.619 1.338 sum -21.039 0.852 -16.370 26.670 Atomic orbital electron populations 1.20828 0.89787 1.03484 1.02908 1.20273 0.97354 0.93208 0.99332 1.21292 0.94208 0.98379 1.00862 1.21270 0.94606 0.97994 1.00091 1.19907 0.95180 0.93684 1.00926 1.20221 0.90339 1.03798 0.95096 1.21647 0.88752 1.06460 0.99610 1.21202 0.91408 0.74575 0.82395 1.90689 1.71427 1.51484 1.32237 1.45844 1.06038 1.74995 1.10175 1.21037 0.82445 1.05668 0.92660 1.20967 0.83131 0.76050 0.91494 1.90630 1.56088 1.52907 1.47533 1.46212 1.06150 1.71813 1.10592 1.18396 0.93447 0.93439 0.78084 0.97846 1.21904 0.97300 0.97322 1.02801 1.21524 1.00784 1.41659 0.94808 0.90811 1.25770 1.02226 0.95450 0.94984 1.70036 1.39498 1.46771 0.99090 0.85410 0.78945 0.78954 0.77098 1.21227 1.19645 1.18980 1.21271 0.94615 0.98000 1.00114 1.21290 0.94203 0.98383 1.00875 0.90546 0.90894 0.90877 0.84672 0.85128 0.90870 0.90921 0.87094 0.87038 0.74728 0.87251 0.87452 0.75652 0.94097 0.96590 0.91474 0.92526 0.85180 0.84706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 71.24 0.71 -0.32 16 2 C -0.10 -1.43 5.88 -19.86 -0.12 -1.55 16 3 C -0.13 -1.88 9.70 22.27 0.22 -1.66 16 4 C -0.12 -1.92 9.70 22.27 0.22 -1.70 16 5 C -0.10 -1.62 5.13 -19.86 -0.10 -1.72 16 6 C -0.06 -1.00 4.64 29.85 0.14 -0.86 16 7 C -0.13 -2.12 5.68 29.85 0.17 -1.95 16 8 C 0.52 12.45 7.83 87.66 0.69 13.13 16 9 O -0.58 -17.61 15.98 -3.04 -0.05 -17.66 16 10 N -0.72 -18.19 5.53 -466.78 -2.58 -20.77 16 11 C 0.11 2.98 6.15 85.64 0.53 3.51 16 12 C 0.50 18.21 7.86 87.66 0.69 18.90 16 13 O -0.59 -26.01 15.33 -3.04 -0.05 -26.05 16 14 N -0.70 -27.32 5.07 -446.09 -2.26 -29.58 16 15 C 0.27 13.49 2.56 44.24 0.11 13.61 16 16 H 0.00 0.21 7.58 -2.38 -0.02 0.20 16 17 C -0.13 -6.59 9.26 71.98 0.67 -5.93 16 18 C -0.55 -28.34 8.73 25.60 0.22 -28.12 16 19 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 20 C 0.02 0.84 5.30 84.66 0.45 1.29 16 21 N -0.92 -51.48 11.32 21.45 0.24 -51.24 16 22 Si 0.97 41.28 29.54 68.60 2.03 43.30 16 23 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 26 C -0.12 -1.94 9.70 22.27 0.22 -1.72 16 27 C -0.13 -1.89 9.70 22.27 0.22 -1.67 16 28 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.56 8.09 -2.39 -0.02 0.54 16 30 H 0.07 0.56 8.09 -2.39 -0.02 0.54 16 31 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 32 H 0.13 1.73 8.06 -2.91 -0.02 1.70 16 33 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 34 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 35 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.41 10.46 7.44 -92.71 -0.69 9.77 16 38 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.41 13.31 8.54 -92.71 -0.79 12.52 16 41 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 44 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 45 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 46 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -67.95 389.09 1.86 -66.09 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: -0.49 Total: 32.69 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 5.02 Total: 3.22 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -4.60 Total: -101.59 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -0.10 Total: -43.71 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -67.95 1.86 -66.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194621909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.244 kcal (2) G-P(sol) polarization free energy of solvation -67.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds