Wall clock time and date at job start Tue Mar 31 2020 12:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36705 * 126.68720 * 2 1 4 4 C 1.46845 * 125.75928 * 359.94781 * 3 2 1 5 5 O 1.21678 * 119.99594 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00495 * 179.97438 * 4 3 2 7 7 C 1.46497 * 120.00378 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.46916 * 325.00200 * 7 6 4 9 9 C 1.52999 * 109.47251 * 84.99818 * 7 6 4 10 10 C 1.50700 * 109.47246 * 205.00148 * 7 6 4 11 11 H 1.07997 * 119.99846 * 359.97438 * 10 7 6 12 12 C 1.37875 * 120.00059 * 179.97438 * 10 7 6 13 13 N 1.31520 * 120.00006 * 0.02562 * 12 10 7 14 14 Si 1.86796 * 120.00251 * 179.97438 * 12 10 7 15 15 H 1.48497 * 109.47121 * 89.99978 * 14 12 10 16 16 H 1.48501 * 109.47290 * 210.00119 * 14 12 10 17 17 H 1.48505 * 109.46943 * 330.00401 * 14 12 10 18 18 N 1.38196 * 108.48765 * 179.97438 * 3 2 1 19 19 H 0.96994 * 125.34533 * 179.97438 * 18 3 2 20 20 C 1.33308 * 109.30604 * 359.91737 * 18 3 2 21 21 C 1.39500 * 107.91005 * 0.15314 * 20 18 3 22 22 C 1.47096 * 121.63095 * 179.80095 * 21 20 18 23 23 O 1.21320 * 122.44548 * 168.58474 * 22 21 20 24 24 C 1.52146 * 115.11621 * 348.59883 * 22 21 20 25 25 C 1.53189 * 108.41037 * 42.73198 * 24 22 21 26 26 C 1.53003 * 109.23395 * 55.33934 * 25 24 22 27 27 C 1.53002 * 109.23300 * 174.70975 * 25 24 22 28 28 C 1.50767 * 129.22820 * 180.30897 * 20 18 3 29 29 H 1.08993 * 109.47000 * 270.02760 * 1 2 3 30 30 H 1.08992 * 109.46875 * 30.02777 * 1 2 3 31 31 H 1.08997 * 109.46766 * 150.02736 * 1 2 3 32 32 H 0.96997 * 119.99610 * 0.02562 * 6 4 3 33 33 H 1.08998 * 109.47311 * 300.00635 * 9 7 6 34 34 H 1.09002 * 109.46848 * 60.00341 * 9 7 6 35 35 H 1.08993 * 109.47303 * 180.02562 * 9 7 6 36 36 H 0.96994 * 119.99998 * 179.97438 * 13 12 10 37 37 H 1.09002 * 109.67458 * 162.45994 * 24 22 21 38 38 H 1.08995 * 109.67640 * 283.00031 * 24 22 21 39 39 H 1.08993 * 109.47564 * 59.99509 * 26 25 24 40 40 H 1.09000 * 109.47066 * 180.02562 * 26 25 24 41 41 H 1.09000 * 109.46628 * 299.99383 * 26 25 24 42 42 H 1.08999 * 109.47157 * 59.99816 * 27 25 24 43 43 H 1.08995 * 109.47817 * 180.02562 * 27 25 24 44 44 H 1.09003 * 109.47269 * 300.00204 * 27 25 24 45 45 H 1.09001 * 109.50493 * 279.35514 * 28 20 18 46 46 H 1.09000 * 109.50619 * 39.43739 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3238 1.0962 0.0000 4 6 1.8809 2.4963 -0.0011 5 8 0.6927 2.7585 -0.0026 6 7 2.7904 3.4909 -0.0004 7 6 2.3486 4.8877 -0.0010 8 1 1.4368 4.9801 -0.5912 9 6 2.0736 5.3362 1.4357 10 6 3.4252 5.7550 -0.6007 11 1 4.3467 5.3103 -0.9464 12 6 3.2339 7.1162 -0.7079 13 7 2.1120 7.6578 -0.2864 14 14 4.5688 8.1913 -1.4506 15 1 4.3603 8.2972 -2.9170 16 1 4.5091 9.5451 -0.8431 17 1 5.8981 7.5863 -1.1820 18 7 3.6366 0.6646 0.0006 19 1 4.4167 1.2410 0.0004 20 6 3.6623 -0.6682 0.0028 21 6 2.3435 -1.1228 0.0001 22 6 2.0223 -2.5582 -0.0028 23 8 0.9005 -2.9746 0.1975 24 6 3.1994 -3.4829 -0.2750 25 6 4.4074 -2.9746 0.5183 26 6 4.0307 -2.8688 1.9974 27 6 5.5644 -3.9637 0.3634 28 6 4.8484 -1.5989 0.0105 29 1 -0.3633 0.0005 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 3.7376 3.2819 0.0004 33 1 1.2949 4.7089 1.8695 34 1 2.9854 5.2438 2.0259 35 1 1.7445 6.3752 1.4353 36 1 1.9776 8.6154 -0.3615 37 1 2.9516 -4.4957 0.0426 38 1 3.4313 -3.4780 -1.3400 39 1 3.7365 -3.8505 2.3686 40 1 4.8876 -2.5070 2.5656 41 1 3.1995 -2.1731 2.1117 42 1 5.8295 -4.0507 -0.6903 43 1 6.4262 -3.6060 0.9268 44 1 5.2617 -4.9394 0.7436 45 1 5.2432 -1.6938 -1.0011 46 1 5.6211 -1.1984 0.6666 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194657057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:40 Heat of formation + Delta-G solvation = -79.021617 kcal Electronic energy + Delta-G solvation = -27087.087313 eV Core-core repulsion = 23361.315047 eV Total energy + Delta-G solvation = -3725.772266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.03091 -40.56837 -39.65508 -38.15639 -36.82349 -34.55117 -33.78340 -32.02288 -30.79349 -29.92799 -28.37451 -27.99284 -27.44169 -27.19968 -24.18523 -22.98741 -21.97876 -20.92720 -20.56328 -19.59179 -18.72562 -18.15830 -17.17730 -16.91594 -16.57677 -16.40048 -16.02271 -15.89722 -15.59183 -15.26676 -15.18755 -14.85315 -14.58995 -14.44284 -14.22693 -13.92845 -13.73894 -13.65961 -13.32491 -13.00201 -12.95512 -12.91088 -12.89682 -12.78607 -12.57598 -12.48391 -12.30038 -12.14505 -11.98313 -11.65839 -11.61926 -11.15970 -10.98270 -10.63416 -10.48271 -10.02882 -9.90318 -9.09933 -8.20047 -6.38543 0.37390 0.46114 1.44288 1.45033 1.55538 1.83047 2.06158 2.28404 2.39164 2.51303 3.10828 3.27112 3.56074 3.64128 3.82459 3.88730 3.91137 4.16649 4.26206 4.34930 4.53924 4.61046 4.70371 4.71760 4.72254 4.74728 4.87251 4.89940 4.95716 5.00255 5.03884 5.04805 5.05630 5.18405 5.20861 5.33088 5.36779 5.42376 5.49525 5.54184 5.56068 5.61172 5.69324 5.87337 6.04697 6.30585 6.67416 6.73796 6.85515 7.26165 7.42047 8.86512 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020214 B = 0.003088 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.834632 B = 9065.459285 C = 9989.505804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.032 4.032 3 C -0.086 4.086 4 C 0.572 3.428 5 O -0.581 6.581 6 N -0.701 5.701 7 C 0.273 3.727 8 H 0.000 1.000 9 C -0.134 4.134 10 C -0.548 4.548 11 H 0.077 0.923 12 C 0.014 3.986 13 N -0.918 5.918 14 Si 0.975 3.025 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.256 1.256 18 N -0.494 5.494 19 H 0.435 0.565 20 C 0.148 3.852 21 C -0.305 4.305 22 C 0.427 3.573 23 O -0.509 6.509 24 C -0.147 4.147 25 C -0.043 4.043 26 C -0.156 4.156 27 C -0.136 4.136 28 C -0.050 4.050 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.400 0.600 33 H 0.010 0.990 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.266 0.734 37 H 0.100 0.900 38 H 0.123 0.877 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.030 0.970 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.126 0.874 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.276 -23.415 0.796 27.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.039 4.039 3 C -0.196 4.196 4 C 0.361 3.639 5 O -0.463 6.463 6 N -0.349 5.349 7 C 0.170 3.830 8 H 0.018 0.982 9 C -0.193 4.193 10 C -0.586 4.586 11 H 0.095 0.905 12 C -0.186 4.186 13 N -0.556 5.556 14 Si 0.799 3.201 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.180 1.180 18 N -0.088 5.088 19 H 0.277 0.723 20 C 0.019 3.981 21 C -0.311 4.311 22 C 0.309 3.691 23 O -0.388 6.388 24 C -0.184 4.184 25 C -0.044 4.044 26 C -0.214 4.214 27 C -0.193 4.193 28 C -0.088 4.088 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.234 0.766 33 H 0.029 0.971 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.119 0.881 38 H 0.141 0.859 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.049 0.951 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.144 0.856 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.865 -23.033 0.925 26.399 hybrid contribution 0.259 1.532 -0.177 1.564 sum 13.124 -21.501 0.749 25.201 Atomic orbital electron populations 1.20265 0.89926 1.02097 1.02017 1.19599 0.95901 0.91044 0.97365 1.19771 0.84227 0.92530 1.23047 1.17518 0.85892 0.83970 0.76557 1.90748 1.17927 1.84093 1.53495 1.46109 1.08979 1.06927 1.72923 1.18374 0.94857 0.76410 0.93341 0.98231 1.21910 0.98130 1.01850 0.97422 1.21515 1.02756 0.92612 1.41737 0.90537 1.25833 0.98050 0.99345 0.95394 1.70058 1.26435 1.12377 1.46693 0.85305 0.79215 0.77516 0.78055 1.20447 1.21080 1.17994 1.41289 1.07147 1.06932 1.53449 0.72330 1.21819 0.97031 0.82976 0.96224 1.20282 0.92915 0.95137 1.22804 1.22504 0.89210 0.88102 0.69306 1.90505 1.26897 1.80927 1.40518 1.22507 0.92739 0.99183 1.03968 1.20447 0.94979 0.94352 0.94596 1.22097 1.01683 1.01925 0.95652 1.21842 0.96080 0.97832 1.03548 1.20807 0.91559 0.90575 1.05822 0.91746 0.91870 0.91248 0.76559 0.97117 0.93934 0.91303 0.92490 0.88143 0.85946 0.91933 0.90498 0.95051 0.90601 0.90744 0.91731 0.85642 0.86540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.13 9.51 71.24 0.68 -2.46 16 2 C -0.03 -1.09 6.20 -19.79 -0.12 -1.22 16 3 C -0.09 -2.87 7.00 40.03 0.28 -2.59 16 4 C 0.57 24.38 7.76 86.49 0.67 25.05 16 5 O -0.58 -29.96 14.38 -4.28 -0.06 -30.02 16 6 N -0.70 -28.99 5.07 -449.92 -2.28 -31.27 16 7 C 0.27 14.13 2.56 44.25 0.11 14.24 16 8 H 0.00 -0.01 7.58 -2.39 -0.02 -0.03 16 9 C -0.13 -6.84 9.26 71.98 0.67 -6.17 16 10 C -0.55 -28.33 8.73 25.60 0.22 -28.11 16 11 H 0.08 3.61 7.74 -2.91 -0.02 3.58 16 12 C 0.01 0.74 5.30 84.65 0.45 1.19 16 13 N -0.92 -52.30 11.32 21.45 0.24 -52.05 16 14 Si 0.97 40.90 29.54 68.60 2.03 42.93 16 15 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 16 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 18 N -0.49 -10.73 5.88 -170.68 -1.00 -11.73 16 19 H 0.44 6.57 8.13 -92.71 -0.75 5.81 16 20 C 0.15 2.75 6.67 42.66 0.28 3.03 16 21 C -0.30 -8.15 5.28 -20.22 -0.11 -8.26 16 22 C 0.43 10.69 5.92 28.48 0.17 10.86 16 23 O -0.51 -16.84 16.99 -3.15 -0.05 -16.89 16 24 C -0.15 -1.95 5.01 30.38 0.15 -1.80 16 25 C -0.04 -0.38 0.75 -52.07 -0.04 -0.42 16 26 C -0.16 -1.99 7.94 71.98 0.57 -1.42 16 27 C -0.14 -0.46 8.43 71.98 0.61 0.14 16 28 C -0.05 -0.40 4.96 29.91 0.15 -0.25 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.06 2.55 6.43 -2.39 -0.02 2.54 16 31 H 0.07 2.39 7.46 -2.39 -0.02 2.37 16 32 H 0.40 13.15 7.61 -92.71 -0.71 12.45 16 33 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.07 3.83 6.07 -2.39 -0.01 3.81 16 36 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 37 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.03 0.61 6.03 -2.39 -0.01 0.59 16 42 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 43 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 44 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 45 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.12 0.40 8.13 -2.39 -0.02 0.39 16 Total: -1.00 -77.36 368.80 3.17 -74.19 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -0.45 Total: 23.03 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 4.74 Total: 1.83 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -3.04 Total: -95.05 kcal Atomic # 8 Polarization: -46.80 SS G_CDS: -0.12 Total: -46.92 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -77.36 3.17 -74.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194657057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.833 kcal (2) G-P(sol) polarization free energy of solvation -77.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds