Wall clock time and date at job start Tue Mar 31 2020 12:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21278 * 119.99450 * 2 1 4 4 N 1.34766 * 120.00045 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00063 * 185.05572 * 4 2 1 6 6 H 1.09000 * 109.47006 * 327.07207 * 5 4 2 7 7 C 1.52998 * 109.47425 * 207.07097 * 5 4 2 8 8 C 1.50698 * 109.46911 * 65.00032 * 7 5 4 9 9 O 1.21274 * 120.00211 * 0.02562 * 8 7 5 10 10 N 1.34780 * 119.99810 * 180.02562 * 8 7 5 11 11 C 1.46500 * 120.00089 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.46893 * 324.99633 * 11 10 8 13 13 C 1.52999 * 109.47181 * 84.99737 * 11 10 8 14 14 C 1.50697 * 109.47264 * 204.99944 * 11 10 8 15 15 H 1.08007 * 120.00030 * 354.27204 * 14 11 10 16 16 C 1.37880 * 120.00259 * 174.26519 * 14 11 10 17 17 N 1.31515 * 119.99992 * 155.89677 * 16 14 11 18 18 Si 1.86800 * 119.99691 * 336.17206 * 16 14 11 19 19 H 1.48502 * 109.46785 * 179.72202 * 18 16 14 20 20 H 1.48496 * 109.47387 * 299.72153 * 18 16 14 21 21 H 1.48498 * 109.47144 * 59.72376 * 18 16 14 22 22 C 1.50699 * 109.46861 * 87.06946 * 5 4 2 23 23 C 1.38240 * 119.99963 * 45.15396 * 22 5 4 24 24 C 1.38240 * 119.99915 * 179.78699 * 23 22 5 25 25 C 1.38238 * 119.99671 * 0.43928 * 24 23 22 26 26 C 1.50704 * 119.99593 * 179.83829 * 25 24 23 27 27 C 1.38234 * 120.00296 * 359.81235 * 25 24 23 28 28 C 1.38236 * 120.00126 * 359.97438 * 27 25 24 29 29 H 1.08993 * 109.47291 * 240.00168 * 1 2 3 30 30 H 1.08993 * 109.47130 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46662 * 120.00668 * 1 2 3 32 32 H 0.96997 * 120.00665 * 5.05927 * 4 2 1 33 33 H 1.08999 * 109.47049 * 305.00118 * 7 5 4 34 34 H 1.08995 * 109.47362 * 185.00142 * 7 5 4 35 35 H 0.97006 * 119.99782 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.47012 * 293.96309 * 13 11 10 37 37 H 1.09001 * 109.46913 * 53.96669 * 13 11 10 38 38 H 1.09004 * 109.46779 * 173.95807 * 13 11 10 39 39 H 0.96999 * 119.99723 * 355.23600 * 17 16 14 40 40 H 1.07999 * 119.99893 * 359.97438 * 23 22 5 41 41 H 1.07996 * 119.99645 * 180.27097 * 24 23 22 42 42 H 1.09006 * 109.46571 * 269.97495 * 26 25 24 43 43 H 1.08998 * 109.47407 * 29.97141 * 26 25 24 44 44 H 1.09001 * 109.46961 * 149.98246 * 26 25 24 45 45 H 1.08001 * 120.00142 * 180.02562 * 27 25 24 46 46 H 1.07997 * 120.00293 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6417 -1.1695 0.1123 6 1 4.0451 -0.2840 -0.3788 7 6 4.2025 -2.4249 -0.5587 8 6 3.9160 -2.3748 -2.0373 9 8 3.3221 -1.4280 -2.5081 10 7 4.3196 -3.3822 -2.8365 11 6 4.0416 -3.3332 -4.2740 12 1 3.0765 -2.8549 -4.4413 13 6 5.1374 -2.5307 -4.9784 14 6 4.0105 -4.7344 -4.8277 15 1 4.2714 -5.5707 -4.1959 16 6 3.6487 -4.9490 -6.1408 17 7 4.0538 -6.0330 -6.7657 18 14 2.5896 -3.6963 -7.0344 19 1 2.3487 -4.1548 -8.4262 20 1 1.2910 -3.5527 -6.3288 21 1 3.2874 -2.3857 -7.0588 22 6 4.0341 -1.1597 1.5673 23 6 3.3970 -2.0005 2.4607 24 6 3.7600 -1.9946 3.7946 25 6 4.7537 -1.1414 4.2366 26 6 5.1469 -1.1324 5.6915 27 6 5.3872 -0.2969 3.3442 28 6 5.0273 -0.3059 2.0096 29 1 -0.3633 -0.5138 0.8899 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5140 -0.8900 32 1 1.6989 -2.0056 -0.0732 33 1 3.7321 -3.3085 -0.1272 34 1 5.2796 -2.4721 -0.3987 35 1 4.7943 -4.1397 -2.4598 36 1 5.0900 -1.4905 -4.6562 37 1 6.1125 -2.9460 -4.7237 38 1 4.9903 -2.5841 -6.0572 39 1 4.6629 -6.6470 -6.3265 40 1 2.6178 -2.6642 2.1160 41 1 3.2653 -2.6547 4.4917 42 1 4.5372 -0.4054 6.2280 43 1 4.9889 -2.1235 6.1167 44 1 6.1989 -0.8616 5.7818 45 1 6.1638 0.3694 3.6896 46 1 5.5224 0.3536 1.3123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194740349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:55 Heat of formation + Delta-G solvation = -68.346823 kcal Electronic energy + Delta-G solvation = -26624.749543 eV Core-core repulsion = 22899.440171 eV Total energy + Delta-G solvation = -3725.309372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.37594 -39.04086 -38.77145 -35.75821 -34.79036 -32.80299 -32.49921 -31.23159 -31.06107 -29.87295 -28.70971 -27.08038 -24.88143 -23.55496 -22.90712 -21.19232 -20.68427 -20.19460 -19.55617 -17.90985 -17.05506 -16.75151 -16.31236 -15.83445 -15.36105 -15.20026 -14.91029 -14.76601 -14.51958 -14.01889 -13.74391 -13.56070 -13.38529 -13.26966 -12.98044 -12.75596 -12.60552 -12.48775 -12.38488 -12.23091 -12.13453 -11.89901 -11.65788 -11.46732 -11.31924 -11.27681 -11.04233 -10.51833 -10.14694 -9.87168 -9.76873 -9.31869 -9.19170 -9.06283 -8.97568 -8.63408 -8.31605 -8.18833 -6.63242 -4.23897 1.14276 1.27626 2.81623 3.18488 3.29527 3.38669 3.43393 3.58083 3.61500 3.92984 4.41392 4.61719 4.63841 4.79390 4.80243 4.88778 4.93429 5.06355 5.07696 5.21304 5.24703 5.31411 5.31939 5.37333 5.45968 5.53461 5.56794 5.61272 5.77531 5.83339 5.91344 5.99965 6.27090 6.38100 6.41024 6.42645 6.54681 6.62415 6.67059 6.85947 6.95338 7.27735 7.38087 7.59753 7.65446 8.21141 8.37509 8.45596 8.67487 8.95599 9.41919 10.74935 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017234 B = 0.003120 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.283025 B = 8971.372087 C = 9851.299683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.520 3.480 3 O -0.547 6.547 4 N -0.712 5.712 5 C 0.203 3.797 6 H 0.105 0.895 7 C -0.148 4.148 8 C 0.498 3.502 9 O -0.545 6.545 10 N -0.704 5.704 11 C 0.245 3.755 12 H 0.039 0.961 13 C -0.155 4.155 14 C -0.626 4.626 15 H 0.062 0.938 16 C 0.046 3.954 17 N -0.889 5.889 18 Si 1.033 2.967 19 H -0.283 1.283 20 H -0.281 1.281 21 H -0.274 1.274 22 C -0.097 4.097 23 C -0.101 4.101 24 C -0.123 4.123 25 C -0.090 4.090 26 C -0.114 4.114 27 C -0.121 4.121 28 C -0.097 4.097 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.398 0.602 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.392 0.608 36 H 0.029 0.971 37 H 0.042 0.958 38 H 0.057 0.943 39 H 0.271 0.729 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.121 0.879 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.021 6.972 22.630 23.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.307 3.693 3 O -0.424 6.424 4 N -0.363 5.363 5 C 0.098 3.902 6 H 0.123 0.877 7 C -0.189 4.189 8 C 0.282 3.718 9 O -0.423 6.423 10 N -0.352 5.352 11 C 0.142 3.858 12 H 0.057 0.943 13 C -0.214 4.214 14 C -0.664 4.664 15 H 0.080 0.920 16 C -0.162 4.162 17 N -0.521 5.521 18 Si 0.861 3.139 19 H -0.209 1.209 20 H -0.207 1.207 21 H -0.200 1.200 22 C -0.098 4.098 23 C -0.119 4.119 24 C -0.141 4.141 25 C -0.090 4.090 26 C -0.170 4.170 27 C -0.139 4.139 28 C -0.116 4.116 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.232 0.768 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.225 0.775 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.139 0.861 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.794 8.675 20.813 22.620 hybrid contribution 0.862 -1.304 1.569 2.215 sum -0.931 7.372 22.382 23.583 Atomic orbital electron populations 1.21904 0.92117 1.05235 1.04094 1.20617 0.90338 0.83469 0.74849 1.90684 1.70815 1.31426 1.49443 1.45796 1.06611 1.08890 1.74955 1.19444 0.81064 0.99433 0.90304 0.87669 1.22029 1.03808 0.98942 0.94123 1.20387 0.79964 0.83382 0.88071 1.90700 1.41715 1.33484 1.76443 1.46314 1.57269 1.21482 1.10109 1.18946 0.94217 0.97118 0.75560 0.94306 1.22412 1.00130 0.97855 1.01005 1.22001 1.54213 0.91262 0.98892 0.92012 1.25629 0.96494 0.99700 0.94346 1.70873 1.29964 1.13229 1.38025 0.84176 0.77264 0.75995 0.76514 1.20850 1.20726 1.20012 1.20233 0.96968 0.96901 0.95745 1.20908 0.99359 0.98555 0.93058 1.20982 0.97881 0.99569 0.95698 1.19922 0.96584 0.96531 0.95978 1.20785 1.01650 1.02410 0.92180 1.21001 1.00447 0.99312 0.93129 1.21051 0.96877 0.97858 0.95778 0.89754 0.89241 0.89283 0.76795 0.88744 0.87801 0.77502 0.95225 0.93847 0.92387 0.91932 0.86271 0.86242 0.91315 0.91633 0.91613 0.86125 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 10.32 36.01 0.37 -1.38 16 2 C 0.52 7.52 7.91 -10.99 -0.09 7.44 16 3 O -0.55 -10.26 16.68 5.56 0.09 -10.17 16 4 N -0.71 -9.10 3.63 -54.93 -0.20 -9.30 16 5 C 0.20 2.69 1.80 -69.08 -0.12 2.56 16 6 H 0.11 1.73 7.06 -51.93 -0.37 1.36 16 7 C -0.15 -1.84 5.18 -27.88 -0.14 -1.99 16 8 C 0.50 8.82 7.66 -10.98 -0.08 8.73 16 9 O -0.55 -11.76 15.02 5.56 0.08 -11.67 16 10 N -0.70 -13.54 5.07 -54.93 -0.28 -13.82 16 11 C 0.24 5.79 2.16 -69.08 -0.15 5.64 16 12 H 0.04 1.00 6.14 -51.93 -0.32 0.68 16 13 C -0.16 -3.53 9.22 37.16 0.34 -3.19 16 14 C -0.63 -16.62 8.94 -34.44 -0.31 -16.93 16 15 H 0.06 1.70 7.96 -52.48 -0.42 1.29 16 16 C 0.05 1.28 5.19 -17.82 -0.09 1.19 16 17 N -0.89 -26.04 13.70 55.43 0.76 -25.28 16 18 Si 1.03 24.89 26.47 -169.99 -4.50 20.39 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.32 6.18 56.52 0.35 -5.97 16 22 C -0.10 -1.14 4.93 -104.62 -0.52 -1.65 16 23 C -0.10 -1.03 9.29 -39.58 -0.37 -1.39 16 24 C -0.12 -1.17 9.70 -39.58 -0.38 -1.55 16 25 C -0.09 -0.85 5.88 -104.62 -0.62 -1.47 16 26 C -0.11 -0.77 10.01 36.01 0.36 -0.41 16 27 C -0.12 -1.22 9.70 -39.58 -0.38 -1.61 16 28 C -0.10 -1.12 9.67 -39.58 -0.38 -1.50 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.89 8.12 -51.93 -0.42 0.47 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.40 4.18 8.63 -40.82 -0.35 3.82 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.39 6.66 8.53 -40.82 -0.35 6.31 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 1.36 5.55 -51.93 -0.29 1.07 16 39 H 0.27 7.82 8.73 -40.82 -0.36 7.47 16 40 H 0.12 1.02 7.88 -52.49 -0.41 0.61 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 44 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 45 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.12 1.37 8.00 -52.49 -0.42 0.95 16 LS Contribution 384.40 15.07 5.79 5.79 Total: -1.00 -34.51 384.40 -8.01 -42.52 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -7.20 Total: 9.04 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -2.56 Total: -7.51 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.28 Total: -48.40 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: 0.18 Total: -21.84 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -4.50 Total: 20.39 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.51 -8.01 -42.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194740349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.831 kcal (2) G-P(sol) polarization free energy of solvation -34.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds