Wall clock time and date at job start Tue Mar 31 2020 12:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21278 * 119.99450 * 2 1 4 4 N 1.34766 * 120.00045 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00063 * 185.05572 * 4 2 1 6 6 H 1.09000 * 109.47006 * 327.07207 * 5 4 2 7 7 C 1.52998 * 109.47425 * 207.07097 * 5 4 2 8 8 C 1.50698 * 109.46911 * 65.00032 * 7 5 4 9 9 O 1.21274 * 120.00211 * 0.02562 * 8 7 5 10 10 N 1.34780 * 119.99810 * 180.02562 * 8 7 5 11 11 C 1.46500 * 120.00089 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.46893 * 324.99633 * 11 10 8 13 13 C 1.52999 * 109.47181 * 84.99737 * 11 10 8 14 14 C 1.50697 * 109.47264 * 204.99944 * 11 10 8 15 15 H 1.08007 * 120.00030 * 354.27204 * 14 11 10 16 16 C 1.37880 * 120.00259 * 174.26519 * 14 11 10 17 17 N 1.31515 * 119.99992 * 155.89677 * 16 14 11 18 18 Si 1.86800 * 119.99691 * 336.17206 * 16 14 11 19 19 H 1.48502 * 109.46785 * 179.72202 * 18 16 14 20 20 H 1.48496 * 109.47387 * 299.72153 * 18 16 14 21 21 H 1.48498 * 109.47144 * 59.72376 * 18 16 14 22 22 C 1.50699 * 109.46861 * 87.06946 * 5 4 2 23 23 C 1.38240 * 119.99963 * 45.15396 * 22 5 4 24 24 C 1.38240 * 119.99915 * 179.78699 * 23 22 5 25 25 C 1.38238 * 119.99671 * 0.43928 * 24 23 22 26 26 C 1.50704 * 119.99593 * 179.83829 * 25 24 23 27 27 C 1.38234 * 120.00296 * 359.81235 * 25 24 23 28 28 C 1.38236 * 120.00126 * 359.97438 * 27 25 24 29 29 H 1.08993 * 109.47291 * 240.00168 * 1 2 3 30 30 H 1.08993 * 109.47130 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46662 * 120.00668 * 1 2 3 32 32 H 0.96997 * 120.00665 * 5.05927 * 4 2 1 33 33 H 1.08999 * 109.47049 * 305.00118 * 7 5 4 34 34 H 1.08995 * 109.47362 * 185.00142 * 7 5 4 35 35 H 0.97006 * 119.99782 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.47012 * 293.96309 * 13 11 10 37 37 H 1.09001 * 109.46913 * 53.96669 * 13 11 10 38 38 H 1.09004 * 109.46779 * 173.95807 * 13 11 10 39 39 H 0.96999 * 119.99723 * 355.23600 * 17 16 14 40 40 H 1.07999 * 119.99893 * 359.97438 * 23 22 5 41 41 H 1.07996 * 119.99645 * 180.27097 * 24 23 22 42 42 H 1.09006 * 109.46571 * 269.97495 * 26 25 24 43 43 H 1.08998 * 109.47407 * 29.97141 * 26 25 24 44 44 H 1.09001 * 109.46961 * 149.98246 * 26 25 24 45 45 H 1.08001 * 120.00142 * 180.02562 * 27 25 24 46 46 H 1.07997 * 120.00293 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6417 -1.1695 0.1123 6 1 4.0451 -0.2840 -0.3788 7 6 4.2025 -2.4249 -0.5587 8 6 3.9160 -2.3748 -2.0373 9 8 3.3221 -1.4280 -2.5081 10 7 4.3196 -3.3822 -2.8365 11 6 4.0416 -3.3332 -4.2740 12 1 3.0765 -2.8549 -4.4413 13 6 5.1374 -2.5307 -4.9784 14 6 4.0105 -4.7344 -4.8277 15 1 4.2714 -5.5707 -4.1959 16 6 3.6487 -4.9490 -6.1408 17 7 4.0538 -6.0330 -6.7657 18 14 2.5896 -3.6963 -7.0344 19 1 2.3487 -4.1548 -8.4262 20 1 1.2910 -3.5527 -6.3288 21 1 3.2874 -2.3857 -7.0588 22 6 4.0341 -1.1597 1.5673 23 6 3.3970 -2.0005 2.4607 24 6 3.7600 -1.9946 3.7946 25 6 4.7537 -1.1414 4.2366 26 6 5.1469 -1.1324 5.6915 27 6 5.3872 -0.2969 3.3442 28 6 5.0273 -0.3059 2.0096 29 1 -0.3633 -0.5138 0.8899 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5140 -0.8900 32 1 1.6989 -2.0056 -0.0732 33 1 3.7321 -3.3085 -0.1272 34 1 5.2796 -2.4721 -0.3987 35 1 4.7943 -4.1397 -2.4598 36 1 5.0900 -1.4905 -4.6562 37 1 6.1125 -2.9460 -4.7237 38 1 4.9903 -2.5841 -6.0572 39 1 4.6629 -6.6470 -6.3265 40 1 2.6178 -2.6642 2.1160 41 1 3.2653 -2.6547 4.4917 42 1 4.5372 -0.4054 6.2280 43 1 4.9889 -2.1235 6.1167 44 1 6.1989 -0.8616 5.7818 45 1 6.1638 0.3694 3.6896 46 1 5.5224 0.3536 1.3123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194740349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:54 Heat of formation + Delta-G solvation = -91.766162 kcal Electronic energy + Delta-G solvation = -26625.765082 eV Core-core repulsion = 22899.440171 eV Total energy + Delta-G solvation = -3726.324910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.45068 -40.27976 -39.87767 -37.09759 -36.33351 -34.46840 -33.68542 -32.42079 -31.81520 -31.28839 -29.78426 -27.90340 -26.89234 -24.59839 -23.70634 -22.57564 -21.86281 -21.26086 -21.11443 -19.78660 -18.31374 -17.85079 -17.48874 -16.97703 -16.73097 -16.14166 -16.04415 -15.87067 -15.64392 -15.45710 -14.86095 -14.63259 -14.57822 -14.46291 -14.28664 -14.24702 -13.86617 -13.72061 -13.39291 -13.29992 -13.20645 -13.00138 -12.97336 -12.79822 -12.47290 -12.40074 -12.10547 -12.04863 -11.81166 -11.77537 -11.23585 -10.93490 -10.78919 -10.44905 -10.12081 -9.87021 -9.81358 -9.42705 -8.81020 -6.42016 0.35799 0.50908 1.46687 1.47771 1.68998 1.72489 1.79101 2.32149 2.41278 2.44775 2.86663 2.94282 3.67214 3.74314 3.90337 3.96702 4.06735 4.15763 4.16137 4.29675 4.47202 4.48963 4.51723 4.58666 4.61374 4.65601 4.71116 4.78111 4.80887 4.85017 4.88298 4.95913 5.05665 5.08754 5.19042 5.28854 5.41775 5.46276 5.50908 5.66450 5.68357 5.70890 5.73037 6.02503 6.11810 6.54324 6.59802 6.87598 7.27261 7.33321 7.47676 8.56291 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017234 B = 0.003120 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.283025 B = 8971.372087 C = 9851.299683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.508 3.492 3 O -0.601 6.601 4 N -0.704 5.704 5 C 0.208 3.792 6 H 0.065 0.935 7 C -0.132 4.132 8 C 0.499 3.501 9 O -0.584 6.584 10 N -0.704 5.704 11 C 0.249 3.751 12 H 0.021 0.979 13 C -0.149 4.149 14 C -0.620 4.620 15 H 0.045 0.955 16 C 0.004 3.996 17 N -0.919 5.919 18 Si 1.065 2.935 19 H -0.282 1.282 20 H -0.271 1.271 21 H -0.261 1.261 22 C -0.109 4.109 23 C -0.102 4.102 24 C -0.127 4.127 25 C -0.093 4.093 26 C -0.113 4.113 27 C -0.130 4.130 28 C -0.118 4.118 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.411 0.589 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.405 0.595 36 H 0.033 0.967 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.262 0.738 40 H 0.138 0.862 41 H 0.144 0.856 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.135 0.865 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.696 6.544 25.091 25.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.297 3.703 3 O -0.482 6.482 4 N -0.355 5.355 5 C 0.102 3.898 6 H 0.083 0.917 7 C -0.172 4.172 8 C 0.286 3.714 9 O -0.465 6.465 10 N -0.353 5.353 11 C 0.144 3.856 12 H 0.039 0.961 13 C -0.208 4.208 14 C -0.658 4.658 15 H 0.063 0.937 16 C -0.198 4.198 17 N -0.553 5.553 18 Si 0.888 3.112 19 H -0.207 1.207 20 H -0.196 1.196 21 H -0.186 1.186 22 C -0.110 4.110 23 C -0.120 4.120 24 C -0.145 4.145 25 C -0.093 4.093 26 C -0.169 4.169 27 C -0.148 4.148 28 C -0.136 4.136 29 H 0.135 0.865 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.247 0.753 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.239 0.761 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.155 0.845 41 H 0.162 0.838 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.152 0.848 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.462 8.202 23.312 24.835 hybrid contribution 1.115 -1.187 0.904 1.863 sum -1.347 7.015 24.216 25.248 Atomic orbital electron populations 1.21911 0.88657 1.05839 1.06071 1.21461 0.92145 0.82984 0.73735 1.90657 1.72200 1.33268 1.52060 1.45802 1.06590 1.09187 1.73914 1.19261 0.81265 0.97963 0.91333 0.91664 1.21991 1.05487 0.99977 0.89731 1.21182 0.78429 0.81916 0.89902 1.90691 1.43311 1.34829 1.77627 1.46134 1.57865 1.22683 1.08623 1.18623 0.93732 0.95060 0.78223 0.96118 1.22305 1.00183 0.98005 1.00270 1.22150 1.52814 0.92275 0.98540 0.93689 1.26653 0.97113 1.00399 0.95669 1.70963 1.31351 1.14330 1.38615 0.83740 0.76665 0.74947 0.75838 1.20707 1.19644 1.18562 1.20064 0.97895 0.98227 0.94854 1.21112 0.99383 0.98301 0.93213 1.21319 0.97695 0.99654 0.95784 1.20305 0.96059 0.95720 0.97247 1.20836 1.02240 1.03456 0.90368 1.21222 1.01013 0.99888 0.92662 1.21155 0.97562 0.98324 0.96597 0.86461 0.89442 0.88324 0.75293 0.85353 0.85695 0.76052 0.94789 0.93011 0.93359 0.92892 0.84468 0.83835 0.90599 0.90327 0.90874 0.84758 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 10.32 71.24 0.74 -2.32 16 2 C 0.51 14.55 7.91 87.66 0.69 15.24 16 3 O -0.60 -23.33 16.68 -3.02 -0.05 -23.38 16 4 N -0.70 -17.26 3.63 -446.10 -1.62 -18.88 16 5 C 0.21 5.38 1.80 44.24 0.08 5.46 16 6 H 0.07 2.24 7.06 -2.39 -0.02 2.22 16 7 C -0.13 -3.02 5.18 29.85 0.15 -2.87 16 8 C 0.50 17.11 7.66 87.66 0.67 17.78 16 9 O -0.58 -25.11 15.02 -3.01 -0.05 -25.16 16 10 N -0.70 -26.21 5.07 -446.10 -2.26 -28.47 16 11 C 0.25 11.58 2.16 44.24 0.10 11.68 16 12 H 0.02 1.06 6.14 -2.39 -0.01 1.05 16 13 C -0.15 -6.66 9.22 71.98 0.66 -6.00 16 14 C -0.62 -32.81 8.94 25.60 0.23 -32.58 16 15 H 0.04 2.49 7.96 -2.91 -0.02 2.47 16 16 C 0.00 0.24 5.19 84.66 0.44 0.68 16 17 N -0.92 -54.30 13.70 21.45 0.29 -54.01 16 18 Si 1.07 49.93 26.47 68.60 1.82 51.75 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.26 -11.57 6.18 99.48 0.62 -10.95 16 22 C -0.11 -2.44 4.93 -19.86 -0.10 -2.54 16 23 C -0.10 -1.82 9.29 22.27 0.21 -1.61 16 24 C -0.13 -2.01 9.70 22.27 0.22 -1.80 16 25 C -0.09 -1.54 5.88 -19.86 -0.12 -1.65 16 26 C -0.11 -1.19 10.01 71.24 0.71 -0.48 16 27 C -0.13 -2.48 9.70 22.27 0.22 -2.27 16 28 C -0.12 -2.71 9.67 22.27 0.22 -2.49 16 29 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 1.66 8.12 -2.39 -0.02 1.64 16 31 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.41 7.73 8.63 -92.71 -0.80 6.93 16 33 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.40 13.05 8.53 -92.70 -0.79 12.26 16 36 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.05 2.22 5.55 -2.38 -0.01 2.21 16 39 H 0.26 15.41 8.73 -92.71 -0.81 14.60 16 40 H 0.14 1.86 7.88 -2.91 -0.02 1.84 16 41 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 44 H 0.07 0.67 8.09 -2.39 -0.02 0.65 16 45 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 46 H 0.11 2.70 8.00 -2.91 -0.02 2.68 16 Total: -1.00 -76.68 384.40 2.52 -74.16 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: -0.73 Total: 29.76 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 5.11 Total: -5.76 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -3.59 Total: -101.36 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -0.10 Total: -48.53 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 1.82 Total: 51.75 kcal Total: -76.68 2.52 -74.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194740349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.610 kcal (2) G-P(sol) polarization free energy of solvation -76.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds