Wall clock time and date at job start Tue Mar 31 2020 12:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 111.03644 * 2 1 4 4 C 1.55645 * 111.16267 * 235.61563 * 2 1 3 5 5 H 1.09000 * 113.23194 * 76.03672 * 4 2 1 6 6 C 1.54826 * 103.06925 * 198.61608 * 4 2 1 7 7 C 1.54023 * 106.05082 * 27.23024 * 6 4 2 8 8 C 1.54820 * 105.99349 * 359.96637 * 7 6 4 9 9 C 1.53004 * 113.12475 * 210.15523 * 8 7 6 10 10 C 1.51797 * 106.90795 * 84.24625 * 8 7 6 11 11 O 1.21221 * 120.21435 * 105.79615 * 10 8 7 12 12 N 1.34703 * 119.56649 * 285.82787 * 10 8 7 13 13 C 1.46500 * 118.88487 * 182.37122 * 12 10 8 14 14 C 1.53008 * 109.46521 * 270.04069 * 13 12 10 15 15 H 1.08997 * 109.47307 * 304.99943 * 14 13 12 16 16 C 1.47205 * 109.47177 * 65.00187 * 14 13 12 17 17 N 5.70947 * 100.61316 * 156.55733 * 2 1 3 18 18 C 1.53002 * 109.46855 * 184.99900 * 14 13 12 19 19 C 1.50706 * 109.46905 * 175.00146 * 18 14 13 20 20 H 1.07993 * 120.00201 * 0.02562 * 19 18 14 21 21 C 1.37878 * 119.99471 * 179.97438 * 19 18 14 22 22 N 1.31511 * 120.00372 * 0.02562 * 21 19 18 23 23 Si 1.86811 * 119.99502 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46954 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47136 * 120.00033 * 23 21 19 26 26 H 1.48496 * 109.46687 * 240.00376 * 23 21 19 27 27 C 1.34583 * 122.21511 * 2.40869 * 12 10 8 28 28 O 1.21233 * 120.21453 * 177.53639 * 27 12 10 29 29 H 1.08999 * 109.47111 * 295.66812 * 1 2 3 30 30 H 1.09003 * 109.46535 * 55.66262 * 1 2 3 31 31 H 1.08999 * 109.47479 * 175.66306 * 1 2 3 32 32 H 1.09000 * 109.46879 * 184.33033 * 3 2 1 33 33 H 1.09000 * 109.47163 * 304.33628 * 3 2 1 34 34 H 1.09008 * 109.46654 * 64.33581 * 3 2 1 35 35 H 1.09002 * 110.14875 * 268.06542 * 6 4 2 36 36 H 1.08997 * 110.14672 * 146.39984 * 6 4 2 37 37 H 1.09010 * 110.14431 * 119.09363 * 7 6 4 38 38 H 1.08995 * 110.14537 * 240.82799 * 7 6 4 39 39 H 1.08995 * 109.46988 * 58.54733 * 9 8 7 40 40 H 1.09002 * 109.46876 * 178.54561 * 9 8 7 41 41 H 1.08995 * 109.47239 * 298.54492 * 9 8 7 42 42 H 1.08997 * 109.47600 * 30.03666 * 13 12 10 43 43 H 1.08999 * 109.47649 * 150.04245 * 13 12 10 44 44 H 1.09001 * 109.47311 * 294.99818 * 18 14 13 45 45 H 1.08996 * 109.47530 * 55.00132 * 18 14 13 46 46 H 0.97004 * 119.99751 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0792 1.4280 0.0000 4 6 2.0919 -0.8197 -1.1979 5 1 2.0217 -0.2933 -2.1497 6 6 3.5511 -1.1100 -0.7696 7 6 3.5510 -1.1093 0.7706 8 6 2.0916 -0.8177 1.1970 9 6 1.9922 -0.0765 2.5318 10 6 1.3531 -2.1439 1.1792 11 8 1.0687 -2.6977 2.2193 12 7 1.0165 -2.7014 0.0001 13 6 0.2581 -3.9549 0.0009 14 6 1.2285 -5.1379 0.0029 15 1 1.9153 -5.0459 -0.8384 16 6 1.9921 -5.1440 1.2614 17 7 2.5815 -5.1486 2.2325 18 6 0.4409 -6.4437 -0.1220 19 6 1.4005 -7.5994 -0.2434 20 1 2.4654 -7.4205 -0.2322 21 6 0.9186 -8.8852 -0.3678 22 7 -0.3783 -9.1031 -0.3810 23 14 2.1080 -10.3179 -0.5177 24 1 3.5028 -9.8097 -0.4757 25 1 1.8913 -11.2611 0.6086 26 1 1.8756 -11.0216 -1.8045 27 6 1.3540 -2.1462 -1.1785 28 8 1.0710 -2.7020 -2.2180 29 1 -0.3633 0.4451 0.9262 30 1 -0.3632 0.5797 -0.8486 31 1 -0.3634 -1.0247 -0.0777 32 1 3.1660 1.3993 -0.0776 33 1 1.6686 1.9752 -0.8486 34 1 1.7941 1.9269 0.9264 35 1 4.2147 -0.3312 -1.1453 36 1 3.8658 -2.0839 -1.1447 37 1 3.8645 -2.0834 1.1465 38 1 4.2146 -0.3303 1.1457 39 1 2.5328 0.8675 2.4643 40 1 0.9449 0.1202 2.7611 41 1 2.4280 -0.6892 3.3210 42 1 -0.3703 -3.9989 0.8904 43 1 -0.3689 -4.0008 -0.8895 44 1 -0.1808 -6.5791 0.7631 45 1 -0.1925 -6.4027 -1.0081 46 1 -0.7172 -10.0077 -0.4689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248796583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:17 Heat of formation + Delta-G solvation = -52.075190 kcal Electronic energy + Delta-G solvation = -28688.906946 eV Core-core repulsion = 24964.303165 eV Total energy + Delta-G solvation = -3724.603781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.69386 -38.79482 -38.60387 -36.43969 -34.93716 -33.58733 -32.62803 -31.92073 -31.63475 -28.48178 -27.09366 -26.77640 -25.27313 -23.72841 -23.48602 -21.82200 -20.92213 -20.52699 -17.69537 -17.31075 -17.14519 -16.79833 -16.26233 -16.11488 -15.39801 -14.94907 -14.71613 -14.52321 -14.14841 -13.95249 -13.72468 -13.41146 -13.28572 -13.02165 -12.96793 -12.73841 -12.67350 -12.47083 -12.08962 -12.04055 -11.73012 -11.65645 -11.64962 -11.45797 -11.39049 -11.29387 -11.08413 -11.04555 -10.84228 -10.64306 -10.61648 -10.33968 -10.12176 -9.83811 -9.72365 -9.40842 -9.09224 -8.44057 -6.07813 -4.10815 1.62780 2.52474 2.77378 3.30090 3.37824 3.42661 3.69472 3.71082 3.74058 3.83223 4.00858 4.13663 4.42429 4.59812 4.72354 4.75040 4.78557 4.81596 4.88430 5.06568 5.11815 5.29210 5.30258 5.31295 5.41884 5.43488 5.47434 5.50497 5.50919 5.54628 5.57792 5.59081 5.62475 5.69588 5.76602 5.87234 5.90950 5.96662 6.02954 6.32513 6.48401 7.06671 7.43087 7.49982 7.52553 7.85222 7.88167 8.23666 8.51626 8.92815 9.54242 11.03231 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022344 B = 0.003878 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.839320 B = 7218.787771 C = 7467.412072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.059 4.059 3 C -0.134 4.134 4 C -0.105 4.105 5 H 0.131 0.869 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.075 4.075 9 C -0.119 4.119 10 C 0.524 3.476 11 O -0.475 6.475 12 N -0.570 5.570 13 C 0.100 3.900 14 C -0.003 4.003 15 H 0.102 0.898 16 C 0.234 3.766 17 N -0.457 5.457 18 C 0.035 3.965 19 C -0.524 4.524 20 H 0.056 0.944 21 C 0.063 3.937 22 N -0.890 5.890 23 Si 0.892 3.108 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.282 1.282 27 C 0.526 3.474 28 O -0.488 6.488 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.112 0.888 44 H 0.028 0.972 45 H 0.042 0.958 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.773 25.148 -1.477 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.059 4.059 3 C -0.191 4.191 4 C -0.126 4.126 5 H 0.149 0.851 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.079 4.079 9 C -0.177 4.177 10 C 0.313 3.687 11 O -0.345 6.345 12 N -0.312 5.312 13 C -0.022 4.022 14 C -0.025 4.025 15 H 0.120 0.880 16 C -0.083 4.083 17 N -0.133 5.133 18 C -0.004 4.004 19 C -0.563 4.563 20 H 0.074 0.926 21 C -0.139 4.139 22 N -0.529 5.529 23 Si 0.720 3.280 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.208 1.208 27 C 0.315 3.685 28 O -0.359 6.359 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.117 0.883 43 H 0.130 0.870 44 H 0.047 0.953 45 H 0.060 0.940 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.235 24.393 -0.009 24.758 hybrid contribution 0.321 -1.181 -0.498 1.322 sum 4.556 23.212 -0.507 23.660 Atomic orbital electron populations 1.22058 0.93195 1.03153 1.03138 1.21982 0.96002 0.96052 0.91866 1.21728 1.01378 0.93301 1.02649 1.23106 0.95793 0.92355 1.01339 0.85117 1.22321 0.94368 1.03587 0.95419 1.22391 0.94125 1.03509 0.95428 1.22249 0.95913 0.91785 0.97911 1.21450 1.02967 0.99554 0.93681 1.21122 0.77934 0.86800 0.82843 1.90782 1.49574 1.62796 1.31325 1.46955 1.51797 1.25083 1.07404 1.22058 0.94379 0.79980 1.05780 1.19502 0.95987 0.98500 0.88526 0.87997 1.28935 0.93212 0.91725 0.94430 1.80966 1.10838 1.10034 1.11492 1.19150 0.95145 0.87202 0.98894 1.21120 0.92851 0.91316 1.50968 0.92554 1.24940 0.95127 0.98911 0.94918 1.69947 1.11799 1.21262 1.49890 0.86525 0.81367 0.82427 0.77708 1.19725 1.20939 1.20774 1.21109 0.77686 0.86935 0.82729 1.90766 1.50380 1.63376 1.31418 0.91361 0.91237 0.91979 0.91694 0.91787 0.91520 0.89317 0.90452 0.90689 0.89389 0.90896 0.91687 0.91107 0.88282 0.86961 0.95328 0.94012 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 8.05 37.16 0.30 -1.04 16 2 C -0.06 -0.46 0.59 -151.79 -0.09 -0.55 16 3 C -0.13 -0.68 8.04 37.16 0.30 -0.38 16 4 C -0.10 -0.95 3.48 -88.86 -0.31 -1.26 16 5 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 6 C -0.12 -1.00 5.59 -25.24 -0.14 -1.14 16 7 C -0.12 -1.08 5.24 -25.24 -0.13 -1.22 16 8 C -0.08 -0.76 0.65 -152.85 -0.10 -0.86 16 9 C -0.12 -1.04 8.01 37.16 0.30 -0.74 16 10 C 0.52 7.55 4.56 -10.48 -0.05 7.50 16 11 O -0.47 -8.58 14.14 5.61 0.08 -8.50 16 12 N -0.57 -8.32 1.54 -114.53 -0.18 -8.49 16 13 C 0.10 1.67 4.60 -4.04 -0.02 1.65 16 14 C 0.00 -0.05 2.42 -93.40 -0.23 -0.28 16 15 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 16 C 0.23 5.22 11.67 -20.76 -0.24 4.97 16 17 N -0.46 -10.82 18.16 42.15 0.77 -10.05 16 18 C 0.03 0.85 4.42 -27.88 -0.12 0.72 16 19 C -0.52 -14.52 8.60 -34.44 -0.30 -14.81 16 20 H 0.06 1.56 7.59 -52.49 -0.40 1.16 16 21 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 22 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 23 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 C 0.53 7.03 5.19 -10.53 -0.05 6.97 16 28 O -0.49 -7.96 16.62 5.60 0.09 -7.87 16 29 H 0.07 0.53 7.67 -51.93 -0.40 0.13 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.67 5.29 -51.93 -0.27 0.39 16 32 H 0.06 0.29 6.87 -51.93 -0.36 -0.07 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.31 6.83 -51.92 -0.35 -0.05 16 35 H 0.09 0.50 7.93 -51.93 -0.41 0.09 16 36 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 37 H 0.07 0.90 7.87 -51.92 -0.41 0.50 16 38 H 0.09 0.60 7.97 -51.93 -0.41 0.18 16 39 H 0.07 0.44 6.80 -51.93 -0.35 0.08 16 40 H 0.06 0.57 7.68 -51.93 -0.40 0.17 16 41 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 42 H 0.10 1.68 7.38 -51.93 -0.38 1.30 16 43 H 0.11 1.77 7.38 -51.93 -0.38 1.39 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -33.88 361.57 -6.09 -39.97 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -7.04 Total: -3.25 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -0.98 Total: 1.24 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 1.33 Total: -43.88 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.17 Total: -16.38 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.88 -6.09 -39.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248796583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.101 kcal (2) G-P(sol) polarization free energy of solvation -33.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds