Wall clock time and date at job start Tue Mar 31 2020 12:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 111.03644 * 2 1 4 4 C 1.55645 * 111.16267 * 235.61563 * 2 1 3 5 5 H 1.09000 * 113.23194 * 76.03672 * 4 2 1 6 6 C 1.54826 * 103.06925 * 198.61608 * 4 2 1 7 7 C 1.54023 * 106.05082 * 27.23024 * 6 4 2 8 8 C 1.54820 * 105.99349 * 359.96637 * 7 6 4 9 9 C 1.53004 * 113.12475 * 210.15523 * 8 7 6 10 10 C 1.51797 * 106.90795 * 84.24625 * 8 7 6 11 11 O 1.21221 * 120.21435 * 105.79615 * 10 8 7 12 12 N 1.34703 * 119.56649 * 285.82787 * 10 8 7 13 13 C 1.46500 * 118.88487 * 182.37122 * 12 10 8 14 14 C 1.53008 * 109.46521 * 270.04069 * 13 12 10 15 15 H 1.08997 * 109.47307 * 304.99943 * 14 13 12 16 16 C 1.47205 * 109.47177 * 65.00187 * 14 13 12 17 17 N 5.70947 * 100.61316 * 156.55733 * 2 1 3 18 18 C 1.53002 * 109.46855 * 184.99900 * 14 13 12 19 19 C 1.50706 * 109.46905 * 175.00146 * 18 14 13 20 20 H 1.07993 * 120.00201 * 0.02562 * 19 18 14 21 21 C 1.37878 * 119.99471 * 179.97438 * 19 18 14 22 22 N 1.31511 * 120.00372 * 0.02562 * 21 19 18 23 23 Si 1.86811 * 119.99502 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46954 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47136 * 120.00033 * 23 21 19 26 26 H 1.48496 * 109.46687 * 240.00376 * 23 21 19 27 27 C 1.34583 * 122.21511 * 2.40869 * 12 10 8 28 28 O 1.21233 * 120.21453 * 177.53639 * 27 12 10 29 29 H 1.08999 * 109.47111 * 295.66812 * 1 2 3 30 30 H 1.09003 * 109.46535 * 55.66262 * 1 2 3 31 31 H 1.08999 * 109.47479 * 175.66306 * 1 2 3 32 32 H 1.09000 * 109.46879 * 184.33033 * 3 2 1 33 33 H 1.09000 * 109.47163 * 304.33628 * 3 2 1 34 34 H 1.09008 * 109.46654 * 64.33581 * 3 2 1 35 35 H 1.09002 * 110.14875 * 268.06542 * 6 4 2 36 36 H 1.08997 * 110.14672 * 146.39984 * 6 4 2 37 37 H 1.09010 * 110.14431 * 119.09363 * 7 6 4 38 38 H 1.08995 * 110.14537 * 240.82799 * 7 6 4 39 39 H 1.08995 * 109.46988 * 58.54733 * 9 8 7 40 40 H 1.09002 * 109.46876 * 178.54561 * 9 8 7 41 41 H 1.08995 * 109.47239 * 298.54492 * 9 8 7 42 42 H 1.08997 * 109.47600 * 30.03666 * 13 12 10 43 43 H 1.08999 * 109.47649 * 150.04245 * 13 12 10 44 44 H 1.09001 * 109.47311 * 294.99818 * 18 14 13 45 45 H 1.08996 * 109.47530 * 55.00132 * 18 14 13 46 46 H 0.97004 * 119.99751 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0792 1.4280 0.0000 4 6 2.0919 -0.8197 -1.1979 5 1 2.0217 -0.2933 -2.1497 6 6 3.5511 -1.1100 -0.7696 7 6 3.5510 -1.1093 0.7706 8 6 2.0916 -0.8177 1.1970 9 6 1.9922 -0.0765 2.5318 10 6 1.3531 -2.1439 1.1792 11 8 1.0687 -2.6977 2.2193 12 7 1.0165 -2.7014 0.0001 13 6 0.2581 -3.9549 0.0009 14 6 1.2285 -5.1379 0.0029 15 1 1.9153 -5.0459 -0.8384 16 6 1.9921 -5.1440 1.2614 17 7 2.5815 -5.1486 2.2325 18 6 0.4409 -6.4437 -0.1220 19 6 1.4005 -7.5994 -0.2434 20 1 2.4654 -7.4205 -0.2322 21 6 0.9186 -8.8852 -0.3678 22 7 -0.3783 -9.1031 -0.3810 23 14 2.1080 -10.3179 -0.5177 24 1 3.5028 -9.8097 -0.4757 25 1 1.8913 -11.2611 0.6086 26 1 1.8756 -11.0216 -1.8045 27 6 1.3540 -2.1462 -1.1785 28 8 1.0710 -2.7020 -2.2180 29 1 -0.3633 0.4451 0.9262 30 1 -0.3632 0.5797 -0.8486 31 1 -0.3634 -1.0247 -0.0777 32 1 3.1660 1.3993 -0.0776 33 1 1.6686 1.9752 -0.8486 34 1 1.7941 1.9269 0.9264 35 1 4.2147 -0.3312 -1.1453 36 1 3.8658 -2.0839 -1.1447 37 1 3.8645 -2.0834 1.1465 38 1 4.2146 -0.3303 1.1457 39 1 2.5328 0.8675 2.4643 40 1 0.9449 0.1202 2.7611 41 1 2.4280 -0.6892 3.3210 42 1 -0.3703 -3.9989 0.8904 43 1 -0.3689 -4.0008 -0.8895 44 1 -0.1808 -6.5791 0.7631 45 1 -0.1925 -6.4027 -1.0081 46 1 -0.7172 -10.0077 -0.4689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248796583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:17 Heat of formation + Delta-G solvation = -72.159159 kcal Electronic energy + Delta-G solvation = -28689.777852 eV Core-core repulsion = 24964.303165 eV Total energy + Delta-G solvation = -3725.474687 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.66699 -39.91808 -39.70019 -38.08687 -36.38288 -35.51479 -33.68579 -33.25115 -32.53248 -29.71950 -28.11441 -27.64534 -26.46809 -25.06129 -24.48208 -23.78883 -21.72377 -21.46064 -18.92511 -18.75734 -18.20266 -18.07128 -17.95667 -17.34638 -16.61246 -16.32153 -15.93588 -15.58664 -15.19879 -15.14319 -15.02367 -14.55472 -14.49085 -14.38154 -14.01856 -13.95889 -13.65152 -13.47654 -13.42730 -13.29085 -13.15079 -12.94049 -12.72924 -12.59070 -12.56010 -12.38661 -12.37133 -12.23942 -12.18804 -12.03844 -11.77912 -11.63684 -11.42915 -11.35436 -10.97045 -10.86739 -10.65102 -10.62936 -8.26378 -6.36232 0.53645 1.34984 1.36385 1.41244 1.48595 1.68770 1.85346 1.91656 2.36207 2.82445 3.04259 3.10518 3.12178 3.25932 3.35128 3.84762 3.88759 3.96595 4.05194 4.10142 4.14905 4.21362 4.29500 4.33248 4.39593 4.42965 4.59922 4.67595 4.76154 4.77752 4.82399 4.90432 4.92045 4.94280 5.03258 5.10063 5.13671 5.17364 5.23447 5.32041 5.38650 5.44938 5.57592 5.68313 5.95328 6.08423 6.42219 6.65364 6.73963 6.76658 7.32348 8.85110 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022344 B = 0.003878 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.839320 B = 7218.787771 C = 7467.412072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.045 4.045 3 C -0.130 4.130 4 C -0.097 4.097 5 H 0.159 0.841 6 C -0.116 4.116 7 C -0.116 4.116 8 C -0.074 4.074 9 C -0.117 4.117 10 C 0.518 3.482 11 O -0.522 6.522 12 N -0.572 5.572 13 C 0.107 3.893 14 C 0.010 3.990 15 H 0.107 0.893 16 C 0.242 3.758 17 N -0.481 5.481 18 C 0.043 3.957 19 C -0.543 4.543 20 H 0.051 0.949 21 C 0.013 3.987 22 N -0.921 5.921 23 Si 0.954 3.046 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.269 1.269 27 C 0.522 3.478 28 O -0.523 6.523 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.131 0.869 36 H 0.054 0.946 37 H 0.037 0.963 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.061 0.939 41 H 0.047 0.953 42 H 0.091 0.909 43 H 0.120 0.880 44 H 0.004 0.996 45 H 0.037 0.963 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.424 28.222 -2.529 28.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.046 4.046 3 C -0.187 4.187 4 C -0.117 4.117 5 H 0.177 0.823 6 C -0.153 4.153 7 C -0.153 4.153 8 C -0.077 4.077 9 C -0.174 4.174 10 C 0.310 3.690 11 O -0.395 6.395 12 N -0.314 5.314 13 C -0.016 4.016 14 C -0.013 4.013 15 H 0.124 0.876 16 C -0.075 4.075 17 N -0.158 5.158 18 C 0.004 3.996 19 C -0.581 4.581 20 H 0.069 0.931 21 C -0.186 4.186 22 N -0.560 5.560 23 Si 0.779 3.221 24 H -0.195 1.195 25 H -0.207 1.207 26 H -0.194 1.194 27 C 0.314 3.686 28 O -0.397 6.397 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.149 0.851 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.142 0.858 39 H 0.129 0.871 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.138 0.862 44 H 0.023 0.977 45 H 0.055 0.945 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.899 27.497 -1.071 28.143 hybrid contribution -0.243 -2.162 -0.151 2.181 sum 5.656 25.334 -1.222 25.987 Atomic orbital electron populations 1.22101 0.93829 1.01580 1.04363 1.22002 0.95463 0.97566 0.89538 1.21774 1.02391 0.90515 1.04015 1.23308 0.95391 0.89670 1.03351 0.82297 1.22390 0.94438 1.03969 0.94547 1.22449 0.93894 1.02745 0.96245 1.22449 0.95864 0.89504 0.99903 1.21498 1.03252 1.00540 0.92075 1.22184 0.76980 0.88050 0.81801 1.90754 1.51617 1.64361 1.32768 1.47078 1.51621 1.24108 1.08583 1.21754 0.93727 0.80351 1.05794 1.19372 0.95990 0.98181 0.87744 0.87556 1.29264 0.92731 0.90979 0.94512 1.80939 1.11785 1.10842 1.12229 1.18939 0.94682 0.88579 0.97390 1.21455 0.93060 0.92640 1.50925 0.93098 1.25748 0.96753 1.01544 0.94590 1.70040 1.13343 1.22094 1.50567 0.85559 0.79192 0.79187 0.78146 1.19498 1.20688 1.19371 1.22124 0.76832 0.88187 0.81468 1.90745 1.51890 1.64696 1.32335 0.90699 0.89382 0.95057 0.90004 0.90166 0.90493 0.85059 0.92672 0.94388 0.85787 0.87056 0.91974 0.93415 0.89071 0.86158 0.97724 0.94493 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 8.05 71.98 0.58 -1.82 16 2 C -0.05 -0.57 0.59 -50.42 -0.03 -0.60 16 3 C -0.13 -0.60 8.04 71.98 0.58 -0.03 16 4 C -0.10 -1.47 3.48 -9.65 -0.03 -1.50 16 5 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 6 C -0.12 -1.58 5.59 31.56 0.18 -1.41 16 7 C -0.12 -1.89 5.24 31.56 0.17 -1.72 16 8 C -0.07 -1.37 0.65 -51.11 -0.03 -1.40 16 9 C -0.12 -1.80 8.01 71.98 0.58 -1.22 16 10 C 0.52 15.26 4.56 88.02 0.40 15.66 16 11 O -0.52 -19.86 14.14 -2.85 -0.04 -19.90 16 12 N -0.57 -17.16 1.54 -753.25 -1.16 -18.32 16 13 C 0.11 3.78 4.60 86.38 0.40 4.18 16 14 C 0.01 0.41 2.42 -12.59 -0.03 0.38 16 15 H 0.11 4.42 8.14 -2.39 -0.02 4.40 16 16 C 0.24 11.25 11.67 89.44 1.04 12.29 16 17 N -0.48 -23.66 18.16 20.01 0.36 -23.30 16 18 C 0.04 2.19 4.42 29.85 0.13 2.32 16 19 C -0.54 -30.84 8.60 25.60 0.22 -30.62 16 20 H 0.05 2.88 7.59 -2.91 -0.02 2.86 16 21 C 0.01 0.75 5.46 84.66 0.46 1.21 16 22 N -0.92 -54.93 13.29 21.45 0.28 -54.64 16 23 Si 0.95 45.19 29.54 68.60 2.03 47.22 16 24 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 C 0.52 13.73 5.19 88.04 0.46 14.19 16 28 O -0.52 -17.12 16.62 -2.88 -0.05 -17.17 16 29 H 0.07 1.01 7.67 -2.39 -0.02 0.99 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.03 0.66 5.29 -2.39 -0.01 0.65 16 32 H 0.08 0.17 6.87 -2.39 -0.02 0.15 16 33 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.08 0.27 6.83 -2.38 -0.02 0.25 16 35 H 0.13 0.75 7.93 -2.39 -0.02 0.73 16 36 H 0.05 1.03 7.87 -2.39 -0.02 1.01 16 37 H 0.04 0.91 7.87 -2.38 -0.02 0.89 16 38 H 0.12 1.14 7.97 -2.39 -0.02 1.12 16 39 H 0.11 0.85 6.80 -2.39 -0.02 0.84 16 40 H 0.06 0.99 7.68 -2.39 -0.02 0.97 16 41 H 0.05 0.96 8.13 -2.39 -0.02 0.95 16 42 H 0.09 3.35 7.38 -2.39 -0.02 3.33 16 43 H 0.12 4.02 7.38 -2.39 -0.02 4.00 16 44 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 45 H 0.04 1.90 8.14 -2.39 -0.02 1.89 16 46 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -77.29 361.57 7.47 -69.82 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 0.98 Total: 6.38 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 5.06 Total: 9.92 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -0.51 Total: -96.27 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.09 Total: -37.07 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -77.29 7.47 -69.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248796583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.341 kcal (2) G-P(sol) polarization free energy of solvation -77.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds