Wall clock time and date at job start Tue Mar 31 2020 12:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99985 * 2 1 4 4 H 1.48496 * 109.46897 * 270.00001 * 3 2 1 5 5 H 1.48496 * 109.47501 * 30.00251 * 3 2 1 6 6 H 1.48501 * 109.46824 * 150.00336 * 3 2 1 7 7 C 1.37877 * 119.99528 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99464 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00480 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47443 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99899 * 90.00099 * 10 9 7 12 12 C 1.50703 * 109.47064 * 270.00279 * 11 10 9 13 13 C 1.38223 * 119.61876 * 94.99581 * 12 11 10 14 14 C 1.38633 * 119.16079 * 179.97438 * 13 12 11 15 15 C 1.38666 * 118.41869 * 0.02562 * 14 13 12 16 16 C 1.38181 * 119.16710 * 359.97438 * 15 14 13 17 17 N 1.31851 * 119.61680 * 274.72577 * 12 11 10 18 18 C 1.34773 * 120.00646 * 270.00265 * 10 9 7 19 19 O 1.21282 * 120.00692 * 179.97438 * 18 10 9 20 20 C 1.50705 * 119.99759 * 0.02562 * 18 10 9 21 21 C 1.52997 * 109.47283 * 180.02562 * 20 18 10 22 22 C 1.53005 * 109.46963 * 179.97438 * 21 20 18 23 23 H 1.08991 * 109.82777 * 305.56755 * 22 21 20 24 24 C 1.54385 * 109.82849 * 184.58598 * 22 21 20 25 25 C 1.55307 * 102.25002 * 219.13291 * 24 22 21 26 26 C 1.54942 * 100.94569 * 34.13455 * 25 24 22 27 27 O 1.43242 * 109.82939 * 66.45409 * 22 21 20 28 28 H 0.97003 * 119.99687 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.46922 * 60.00021 * 9 7 2 30 30 H 1.08996 * 109.47481 * 300.00312 * 9 7 2 31 31 H 1.09002 * 109.47068 * 30.00248 * 11 10 9 32 32 H 1.09001 * 109.47372 * 150.00336 * 11 10 9 33 33 H 1.07998 * 120.41789 * 0.02562 * 13 12 11 34 34 H 1.07992 * 120.78662 * 180.02562 * 14 13 12 35 35 H 1.08010 * 120.41693 * 180.02562 * 15 14 13 36 36 H 1.07998 * 119.61572 * 180.02562 * 16 15 14 37 37 H 1.09006 * 109.46606 * 299.99889 * 20 18 10 38 38 H 1.08999 * 109.47462 * 59.99201 * 20 18 10 39 39 H 1.09000 * 109.46715 * 299.99592 * 21 20 18 40 40 H 1.09002 * 109.47244 * 59.99807 * 21 20 18 41 41 H 1.09006 * 110.84715 * 337.31771 * 24 22 21 42 42 H 1.08997 * 110.84853 * 100.94343 * 24 22 21 43 43 H 1.08998 * 111.12363 * 276.21292 * 25 24 22 44 44 H 1.09005 * 111.15948 * 152.06967 * 25 24 22 45 45 H 1.08997 * 110.31302 * 204.64225 * 26 25 24 46 46 H 1.08997 * 110.39569 * 82.51248 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.6798 -4.1700 1.2664 12 6 3.9233 -3.4379 1.7009 13 6 3.8194 -2.3785 2.5826 14 6 4.9695 -1.7120 2.9763 15 6 6.1864 -2.1376 2.4657 16 6 6.2124 -3.2046 1.5881 17 7 5.0984 -3.8186 1.2396 18 6 2.6400 -4.1244 -1.1694 19 8 3.4284 -5.0460 -1.1705 20 6 2.1499 -3.5507 -2.4740 21 6 2.7945 -4.3064 -3.6377 22 6 2.2964 -3.7244 -4.9621 23 1 1.2067 -3.7327 -4.9830 24 6 2.8511 -4.5537 -6.1402 25 6 3.1787 -3.4569 -7.1899 26 6 3.6232 -2.2923 -6.2696 27 8 2.7750 -2.3828 -5.1138 28 1 -0.4850 0.8401 -0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 1.9070 -4.0565 2.0267 32 1 2.9081 -5.2278 1.1354 33 1 2.8545 -2.0743 2.9606 34 1 4.9187 -0.8811 3.6643 35 1 7.1026 -1.6419 2.7511 36 1 7.1562 -3.5424 1.1864 37 1 1.0661 -3.6523 -2.5311 38 1 2.4194 -2.4961 -2.5313 39 1 3.8783 -4.2052 -3.5806 40 1 2.5245 -5.3609 -3.5802 41 1 3.7530 -5.0906 -5.8459 42 1 2.0956 -5.2412 -6.5204 43 1 2.2932 -3.1869 -7.7652 44 1 3.9903 -3.7705 -7.8465 45 1 3.4772 -1.3361 -6.7720 46 1 4.6678 -2.4125 -5.9826 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264115887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:02 Heat of formation + Delta-G solvation = -56.651772 kcal Electronic energy + Delta-G solvation = -27337.544957 eV Core-core repulsion = 23612.742721 eV Total energy + Delta-G solvation = -3724.802236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.84527 -39.40753 -38.54775 -35.04272 -33.20118 -32.60913 -32.00256 -31.91661 -31.17523 -28.52835 -27.47925 -25.99578 -23.81002 -23.06445 -22.68131 -21.78955 -21.38498 -20.45124 -18.13885 -16.85417 -16.69380 -16.41442 -16.25330 -15.76789 -15.56201 -15.20582 -14.96709 -14.55140 -14.30970 -14.04540 -13.52748 -13.34439 -13.24146 -12.93619 -12.69234 -12.54058 -12.26588 -12.01729 -11.70021 -11.64717 -11.47741 -11.32669 -11.26530 -11.18026 -10.88358 -10.81385 -10.76465 -10.49434 -10.33873 -10.12288 -9.71926 -9.37897 -9.29015 -8.93141 -8.89287 -8.56835 -8.39063 -7.65693 -6.13494 -4.18573 1.57160 1.80096 3.25458 3.32538 3.35701 3.57414 3.93957 4.02150 4.36294 4.49790 4.52589 4.81440 4.82450 4.93359 5.20021 5.21566 5.23415 5.26029 5.27713 5.44853 5.49979 5.58873 5.63976 5.69618 5.70677 5.77852 5.87365 5.89365 5.96779 6.00144 6.07104 6.18972 6.22490 6.26069 6.31937 6.60191 6.65845 6.66706 6.75552 6.85741 7.17666 7.22564 7.26443 7.60453 7.82290 8.11966 8.41231 8.56985 8.87129 9.17225 9.49006 10.93381 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009937 B = 0.004823 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.087750 B = 5804.699833 C = 7114.283530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.237 3.763 10 N -0.595 5.595 11 C 0.171 3.829 12 C 0.126 3.874 13 C -0.133 4.133 14 C -0.084 4.084 15 C -0.183 4.183 16 C 0.087 3.913 17 N -0.461 5.461 18 C 0.517 3.483 19 O -0.559 6.559 20 C -0.129 4.129 21 C -0.109 4.109 22 C 0.079 3.921 23 H 0.080 0.920 24 C -0.151 4.151 25 C -0.157 4.157 26 C 0.049 3.951 27 O -0.370 6.370 28 H 0.264 0.736 29 H 0.041 0.959 30 H 0.034 0.966 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.136 0.864 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.146 0.854 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.515 -5.772 -4.669 9.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.076 0.924 9 C 0.117 3.883 10 N -0.327 5.327 11 C 0.046 3.954 12 C -0.013 4.013 13 C -0.154 4.154 14 C -0.110 4.110 15 C -0.203 4.203 16 C -0.071 4.071 17 N -0.170 5.170 18 C 0.306 3.694 19 O -0.438 6.438 20 C -0.169 4.169 21 C -0.147 4.147 22 C 0.022 3.978 23 H 0.098 0.902 24 C -0.188 4.188 25 C -0.194 4.194 26 C -0.028 4.028 27 O -0.289 6.289 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.154 0.846 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.163 0.837 37 H 0.103 0.897 38 H 0.125 0.875 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.714 -6.672 -5.099 10.157 hybrid contribution 0.511 2.013 0.479 2.132 sum 6.225 -4.658 -4.620 9.044 Atomic orbital electron populations 1.69915 1.05881 1.27085 1.50217 1.24869 0.94733 0.98978 0.94930 0.86627 0.79877 0.83422 0.78425 1.20445 1.21174 1.19927 1.21427 0.93389 0.90343 1.51241 0.92408 1.19470 0.87374 0.82770 0.98650 1.48199 1.45230 1.35548 1.03692 1.20075 0.90975 0.97360 0.86977 1.21668 0.93661 0.93912 0.92071 1.21992 0.99475 0.95704 0.98182 1.21489 0.92574 0.98419 0.98520 1.22019 0.98551 0.99364 1.00364 1.22631 0.96704 0.92949 0.94798 1.67570 0.98177 1.29572 1.21724 1.20592 0.80621 0.82337 0.85819 1.90612 1.35163 1.30234 1.87835 1.21545 1.01216 1.02869 0.91264 1.21704 1.01401 0.99144 0.92424 1.22835 0.98494 0.81974 0.94511 0.90243 1.23184 1.02130 0.98302 0.95222 1.23259 1.02013 0.95930 0.98237 1.23338 0.94667 0.98655 0.86127 1.88541 1.65953 1.27988 1.46443 0.92667 0.94124 0.94783 0.89654 0.89482 0.84609 0.85497 0.85715 0.83676 0.89730 0.87456 0.91213 0.90894 0.90308 0.90212 0.90559 0.90299 0.90095 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.44 13.29 55.43 0.74 -23.71 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.53 -13.56 9.13 -34.44 -0.31 -13.87 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.24 5.56 5.01 -5.20 -0.03 5.53 16 10 N -0.60 -12.77 2.44 -176.43 -0.43 -13.20 16 11 C 0.17 3.29 5.76 -5.19 -0.03 3.26 16 12 C 0.13 2.48 6.36 -82.59 -0.53 1.96 16 13 C -0.13 -2.42 9.57 -39.44 -0.38 -2.79 16 14 C -0.08 -1.36 10.18 -39.28 -0.40 -1.76 16 15 C -0.18 -2.79 10.11 -39.44 -0.40 -3.19 16 16 C 0.09 1.47 11.18 -17.55 -0.20 1.28 16 17 N -0.46 -9.32 10.27 -9.47 -0.10 -9.42 16 18 C 0.52 11.21 7.67 -10.98 -0.08 11.12 16 19 O -0.56 -13.02 15.56 5.56 0.09 -12.93 16 20 C -0.13 -2.51 4.16 -27.88 -0.12 -2.62 16 21 C -0.11 -1.80 4.07 -26.73 -0.11 -1.91 16 22 C 0.08 1.14 3.52 -26.00 -0.09 1.05 16 23 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 24 C -0.15 -1.67 6.54 -24.78 -0.16 -1.83 16 25 C -0.16 -1.57 7.16 -24.48 -0.18 -1.74 16 26 C 0.05 0.61 7.78 38.18 0.30 0.91 16 27 O -0.37 -6.15 10.64 -35.23 -0.37 -6.53 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.04 0.99 6.44 -51.93 -0.33 0.66 16 30 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 31 H 0.09 1.44 7.79 -51.93 -0.40 1.03 16 32 H 0.09 1.69 7.42 -51.93 -0.39 1.30 16 33 H 0.14 2.37 8.06 -52.49 -0.42 1.95 16 34 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 36 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 37 H 0.08 1.54 7.40 -51.93 -0.38 1.16 16 38 H 0.11 2.36 7.74 -51.93 -0.40 1.96 16 39 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 40 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 41 H 0.08 0.86 7.85 -51.93 -0.41 0.46 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 382.66 15.07 5.77 5.77 Total: -1.00 -31.55 382.66 -9.48 -41.04 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.34 Total: 5.90 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -2.81 Total: -2.91 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.21 Total: -46.32 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.29 Total: -19.46 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.55 -9.48 -41.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264115887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.615 kcal (2) G-P(sol) polarization free energy of solvation -31.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds