Wall clock time and date at job start Tue Mar 31 2020 12:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99985 * 2 1 4 4 H 1.48496 * 109.46897 * 270.00001 * 3 2 1 5 5 H 1.48496 * 109.47501 * 30.00251 * 3 2 1 6 6 H 1.48501 * 109.46824 * 150.00336 * 3 2 1 7 7 C 1.37877 * 119.99528 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99464 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00480 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47443 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99899 * 90.00099 * 10 9 7 12 12 C 1.50703 * 109.47064 * 270.00279 * 11 10 9 13 13 C 1.38223 * 119.61876 * 94.99581 * 12 11 10 14 14 C 1.38633 * 119.16079 * 179.97438 * 13 12 11 15 15 C 1.38666 * 118.41869 * 0.02562 * 14 13 12 16 16 C 1.38181 * 119.16710 * 359.97438 * 15 14 13 17 17 N 1.31851 * 119.61680 * 274.72577 * 12 11 10 18 18 C 1.34773 * 120.00646 * 270.00265 * 10 9 7 19 19 O 1.21282 * 120.00692 * 179.97438 * 18 10 9 20 20 C 1.50705 * 119.99759 * 0.02562 * 18 10 9 21 21 C 1.52997 * 109.47283 * 180.02562 * 20 18 10 22 22 C 1.53005 * 109.46963 * 179.97438 * 21 20 18 23 23 H 1.08991 * 109.82777 * 305.56755 * 22 21 20 24 24 C 1.54385 * 109.82849 * 184.58598 * 22 21 20 25 25 C 1.55307 * 102.25002 * 219.13291 * 24 22 21 26 26 C 1.54942 * 100.94569 * 34.13455 * 25 24 22 27 27 O 1.43242 * 109.82939 * 66.45409 * 22 21 20 28 28 H 0.97003 * 119.99687 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.46922 * 60.00021 * 9 7 2 30 30 H 1.08996 * 109.47481 * 300.00312 * 9 7 2 31 31 H 1.09002 * 109.47068 * 30.00248 * 11 10 9 32 32 H 1.09001 * 109.47372 * 150.00336 * 11 10 9 33 33 H 1.07998 * 120.41789 * 0.02562 * 13 12 11 34 34 H 1.07992 * 120.78662 * 180.02562 * 14 13 12 35 35 H 1.08010 * 120.41693 * 180.02562 * 15 14 13 36 36 H 1.07998 * 119.61572 * 180.02562 * 16 15 14 37 37 H 1.09006 * 109.46606 * 299.99889 * 20 18 10 38 38 H 1.08999 * 109.47462 * 59.99201 * 20 18 10 39 39 H 1.09000 * 109.46715 * 299.99592 * 21 20 18 40 40 H 1.09002 * 109.47244 * 59.99807 * 21 20 18 41 41 H 1.09006 * 110.84715 * 337.31771 * 24 22 21 42 42 H 1.08997 * 110.84853 * 100.94343 * 24 22 21 43 43 H 1.08998 * 111.12363 * 276.21292 * 25 24 22 44 44 H 1.09005 * 111.15948 * 152.06967 * 25 24 22 45 45 H 1.08997 * 110.31302 * 204.64225 * 26 25 24 46 46 H 1.08997 * 110.39569 * 82.51248 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.6798 -4.1700 1.2664 12 6 3.9233 -3.4379 1.7009 13 6 3.8194 -2.3785 2.5826 14 6 4.9695 -1.7120 2.9763 15 6 6.1864 -2.1376 2.4657 16 6 6.2124 -3.2046 1.5881 17 7 5.0984 -3.8186 1.2396 18 6 2.6400 -4.1244 -1.1694 19 8 3.4284 -5.0460 -1.1705 20 6 2.1499 -3.5507 -2.4740 21 6 2.7945 -4.3064 -3.6377 22 6 2.2964 -3.7244 -4.9621 23 1 1.2067 -3.7327 -4.9830 24 6 2.8511 -4.5537 -6.1402 25 6 3.1787 -3.4569 -7.1899 26 6 3.6232 -2.2923 -6.2696 27 8 2.7750 -2.3828 -5.1138 28 1 -0.4850 0.8401 -0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 1.9070 -4.0565 2.0267 32 1 2.9081 -5.2278 1.1354 33 1 2.8545 -2.0743 2.9606 34 1 4.9187 -0.8811 3.6643 35 1 7.1026 -1.6419 2.7511 36 1 7.1562 -3.5424 1.1864 37 1 1.0661 -3.6523 -2.5311 38 1 2.4194 -2.4961 -2.5313 39 1 3.8783 -4.2052 -3.5806 40 1 2.5245 -5.3609 -3.5802 41 1 3.7530 -5.0906 -5.8459 42 1 2.0956 -5.2412 -6.5204 43 1 2.2932 -3.1869 -7.7652 44 1 3.9903 -3.7705 -7.8465 45 1 3.4772 -1.3361 -6.7720 46 1 4.6678 -2.4125 -5.9826 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264115887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:01 Heat of formation + Delta-G solvation = -74.633733 kcal Electronic energy + Delta-G solvation = -27338.324714 eV Core-core repulsion = 23612.742721 eV Total energy + Delta-G solvation = -3725.581993 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.30886 -40.61262 -40.04227 -36.80740 -34.80038 -34.35429 -33.31178 -32.99982 -32.60754 -29.81020 -29.30828 -27.49242 -25.26225 -24.65016 -24.23970 -23.00914 -22.44497 -21.67026 -19.83662 -18.67121 -17.97339 -17.91614 -17.68304 -17.13631 -16.91635 -16.68152 -16.55743 -16.10056 -15.97713 -15.25968 -14.90884 -14.66722 -14.36207 -14.27187 -14.18138 -14.01128 -13.92927 -13.49445 -13.42176 -13.12079 -12.89519 -12.75094 -12.64733 -12.59591 -12.47890 -12.22066 -12.04553 -11.80736 -11.75667 -11.68889 -11.64084 -10.76076 -10.66849 -10.53081 -10.43349 -10.31429 -9.84551 -9.42555 -8.17704 -6.28056 0.22846 0.47347 1.36194 1.40137 1.47307 1.83556 2.33328 2.44559 2.97346 3.06951 3.13704 3.47106 3.61833 3.68141 3.89167 3.98856 4.01194 4.05357 4.18755 4.22402 4.27974 4.31918 4.38932 4.44308 4.53951 4.60763 4.68876 4.81973 4.82887 4.83897 4.89027 4.91953 4.94486 4.95783 4.99911 5.16252 5.23995 5.26982 5.28811 5.34518 5.36772 5.68991 5.85658 5.88575 6.10582 6.19787 6.59328 6.84859 7.19928 7.35851 7.47832 8.88143 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009937 B = 0.004823 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.087750 B = 5804.699833 C = 7114.283530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.029 3.971 3 Si 0.940 3.060 4 H -0.283 1.283 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.039 0.961 9 C 0.253 3.747 10 N -0.596 5.596 11 C 0.167 3.833 12 C 0.103 3.897 13 C -0.148 4.148 14 C -0.088 4.088 15 C -0.170 4.170 16 C 0.072 3.928 17 N -0.499 5.499 18 C 0.511 3.489 19 O -0.577 6.577 20 C -0.121 4.121 21 C -0.098 4.098 22 C 0.076 3.924 23 H 0.084 0.916 24 C -0.145 4.145 25 C -0.145 4.145 26 C 0.036 3.964 27 O -0.408 6.408 28 H 0.266 0.734 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.135 0.865 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.170 0.830 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.582 -5.230 -5.155 9.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.171 4.171 3 Si 0.766 3.234 4 H -0.209 1.209 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.057 0.943 9 C 0.132 3.868 10 N -0.326 5.326 11 C 0.044 3.956 12 C -0.036 4.036 13 C -0.168 4.168 14 C -0.114 4.114 15 C -0.190 4.190 16 C -0.085 4.085 17 N -0.208 5.208 18 C 0.300 3.700 19 O -0.458 6.458 20 C -0.161 4.161 21 C -0.136 4.136 22 C 0.018 3.982 23 H 0.102 0.898 24 C -0.183 4.183 25 C -0.182 4.182 26 C -0.040 4.040 27 O -0.328 6.328 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.153 0.847 34 H 0.174 0.826 35 H 0.183 0.817 36 H 0.187 0.813 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.121 0.879 43 H 0.105 0.895 44 H 0.121 0.879 45 H 0.109 0.891 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.783 -6.134 -5.574 10.710 hybrid contribution 0.259 1.848 0.682 1.987 sum 7.042 -4.286 -4.892 9.586 Atomic orbital electron populations 1.69982 1.06809 1.27832 1.51029 1.25437 0.95386 1.01484 0.94822 0.85824 0.78979 0.80498 0.78056 1.20919 1.20182 1.19707 1.21412 0.92390 0.91438 1.50772 0.94300 1.19154 0.87260 0.82674 0.97722 1.48184 1.44842 1.34915 1.04681 1.20215 0.91995 0.96950 0.86483 1.21616 0.93543 0.95002 0.93396 1.22090 1.00479 0.95821 0.98415 1.21914 0.92170 0.98740 0.98560 1.22435 0.99830 0.98180 0.98565 1.23168 0.96727 0.93435 0.95157 1.67514 0.99169 1.31148 1.23017 1.20985 0.80325 0.82142 0.86506 1.90587 1.35941 1.31130 1.88147 1.21489 1.01904 1.01261 0.91458 1.21640 0.99840 0.99439 0.92709 1.22909 0.98795 0.81933 0.94516 0.89797 1.23176 1.02638 0.98460 0.93985 1.23240 1.03240 0.94028 0.97705 1.23588 0.94127 1.00525 0.85800 1.88502 1.66714 1.29235 1.48355 0.92465 0.95191 0.95288 0.87800 0.90097 0.84700 0.82583 0.81663 0.81260 0.88865 0.90363 0.93169 0.89903 0.90308 0.87911 0.89476 0.87904 0.89142 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.34 13.29 21.45 0.28 -50.06 16 2 C 0.03 1.53 5.46 84.65 0.46 1.99 16 3 Si 0.94 42.87 29.54 68.60 2.03 44.89 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.52 -27.31 9.13 25.60 0.23 -27.07 16 8 H 0.04 2.17 7.81 -2.91 -0.02 2.15 16 9 C 0.25 12.13 5.01 85.63 0.43 12.55 16 10 N -0.60 -26.28 2.44 -830.50 -2.03 -28.31 16 11 C 0.17 6.63 5.76 85.63 0.49 7.12 16 12 C 0.10 4.09 6.36 42.55 0.27 4.36 16 13 C -0.15 -5.31 9.57 22.36 0.21 -5.09 16 14 C -0.09 -2.66 10.18 22.47 0.23 -2.43 16 15 C -0.17 -4.75 10.11 22.36 0.23 -4.52 16 16 C 0.07 2.37 11.18 84.67 0.95 3.31 16 17 N -0.50 -20.26 10.27 -183.89 -1.89 -22.15 16 18 C 0.51 22.82 7.67 87.66 0.67 23.50 16 19 O -0.58 -27.60 15.56 -3.04 -0.05 -27.65 16 20 C -0.12 -4.88 4.16 29.85 0.12 -4.75 16 21 C -0.10 -3.30 4.07 30.59 0.12 -3.18 16 22 C 0.08 2.15 3.52 31.07 0.11 2.26 16 23 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 24 C -0.15 -2.92 6.54 31.86 0.21 -2.71 16 25 C -0.14 -2.55 7.16 32.05 0.23 -2.32 16 26 C 0.04 0.87 7.78 72.65 0.56 1.43 16 27 O -0.41 -13.70 10.64 -148.98 -1.58 -15.28 16 28 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 29 H 0.03 1.50 6.44 -2.38 -0.02 1.49 16 30 H 0.03 1.42 7.89 -2.39 -0.02 1.40 16 31 H 0.10 3.59 7.79 -2.39 -0.02 3.57 16 32 H 0.08 3.25 7.42 -2.39 -0.02 3.23 16 33 H 0.14 4.73 8.06 -2.91 -0.02 4.70 16 34 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 35 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 36 H 0.17 4.47 8.06 -2.91 -0.02 4.45 16 37 H 0.09 3.51 7.40 -2.38 -0.02 3.50 16 38 H 0.08 3.62 7.74 -2.39 -0.02 3.60 16 39 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 40 H 0.08 2.59 8.10 -2.39 -0.02 2.57 16 41 H 0.08 1.59 7.85 -2.38 -0.02 1.57 16 42 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 45 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -68.74 382.66 3.25 -65.48 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: 0.95 Total: 28.61 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 5.54 Total: 4.46 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -3.63 Total: -100.52 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -1.63 Total: -42.93 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -68.74 3.25 -65.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264115887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.152 kcal (2) G-P(sol) polarization free energy of solvation -68.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds