Wall clock time and date at job start Tue Mar 31 2020 12:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99881 * 2 1 4 4 H 1.48502 * 109.47009 * 240.00051 * 3 2 1 5 5 H 1.48502 * 109.47272 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47246 * 120.00185 * 3 2 1 7 7 C 1.37879 * 119.99917 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99715 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00016 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47223 * 180.02562 * 9 7 2 11 11 C 1.46491 * 120.00339 * 90.00061 * 10 9 7 12 12 C 1.50699 * 109.47300 * 90.00207 * 11 10 9 13 13 C 1.38221 * 119.61811 * 95.25758 * 12 11 10 14 14 C 1.38631 * 119.16046 * 180.27599 * 13 12 11 15 15 C 1.38675 * 118.41910 * 359.47670 * 14 13 12 16 16 C 1.38184 * 119.16116 * 0.25514 * 15 14 13 17 17 N 1.31852 * 119.61540 * 275.00012 * 12 11 10 18 18 C 1.34781 * 119.99432 * 270.00068 * 10 9 7 19 19 O 1.21283 * 119.99527 * 179.97438 * 18 10 9 20 20 C 1.50694 * 120.00222 * 0.02562 * 18 10 9 21 21 C 1.52999 * 109.47155 * 180.02562 * 20 18 10 22 22 C 1.53001 * 109.47436 * 179.97438 * 21 20 18 23 23 H 1.08998 * 110.27130 * 55.63639 * 22 21 20 24 24 C 1.54943 * 110.31085 * 177.82985 * 22 21 20 25 25 C 1.55304 * 100.93951 * 155.35962 * 24 22 21 26 26 C 1.54375 * 102.25797 * 325.86928 * 25 24 22 27 27 O 1.43246 * 107.58552 * 21.35341 * 26 25 24 28 28 H 0.97000 * 119.99834 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47050 * 60.00459 * 9 7 2 30 30 H 1.09000 * 109.47225 * 300.00112 * 9 7 2 31 31 H 1.09008 * 109.47084 * 329.99622 * 11 10 9 32 32 H 1.09003 * 109.46988 * 210.00445 * 11 10 9 33 33 H 1.07999 * 120.42401 * 0.02562 * 13 12 11 34 34 H 1.08002 * 120.79356 * 179.75783 * 14 13 12 35 35 H 1.07997 * 120.41922 * 180.23180 * 15 14 13 36 36 H 1.08006 * 119.61437 * 180.02562 * 16 15 14 37 37 H 1.08998 * 109.47022 * 299.99532 * 20 18 10 38 38 H 1.08995 * 109.47914 * 60.00019 * 20 18 10 39 39 H 1.09006 * 109.46913 * 299.99418 * 21 20 18 40 40 H 1.08998 * 109.47586 * 59.99445 * 21 20 18 41 41 H 1.08995 * 111.12984 * 273.27890 * 24 22 21 42 42 H 1.09000 * 111.12347 * 37.44532 * 24 22 21 43 43 H 1.09003 * 110.84931 * 207.67270 * 25 24 22 44 44 H 1.09007 * 111.01874 * 84.14024 * 25 24 22 45 45 H 1.08996 * 109.83034 * 261.84729 * 26 25 24 46 46 H 1.08994 * 109.83431 * 140.86486 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6791 -4.1695 1.2681 12 6 1.7624 -5.2837 1.7031 13 6 2.0819 -6.5920 1.3918 14 6 1.2289 -7.6091 1.7917 15 6 0.0869 -7.2716 2.5024 16 6 -0.1638 -5.9417 2.7818 17 7 0.6675 -4.9997 2.3806 18 6 2.6409 -4.1248 -1.1678 19 8 3.4294 -5.0464 -1.1679 20 6 2.1517 -3.5517 -2.4728 21 6 2.7971 -4.3078 -3.6358 22 6 2.3000 -3.7264 -4.9608 23 1 2.4945 -2.6546 -4.9996 24 6 2.9836 -4.4425 -6.1527 25 6 1.9376 -4.2085 -7.2765 26 6 0.6048 -4.2567 -6.4990 27 8 0.8963 -3.9845 -5.1232 28 1 -0.4850 0.8401 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.6869 -3.3878 2.0278 32 1 3.6885 -4.5595 1.1377 33 1 2.9825 -6.8187 0.8406 34 1 1.4508 -8.6402 1.5592 35 1 -0.5979 -8.0384 2.8330 36 1 -1.0508 -5.6706 3.3352 37 1 1.0680 -3.6533 -2.5308 38 1 2.4213 -2.4972 -2.5305 39 1 3.8809 -4.2066 -3.5781 40 1 2.5272 -5.3623 -3.5782 41 1 3.9363 -3.9736 -6.3988 42 1 3.1119 -5.5060 -5.9507 43 1 1.9822 -5.0044 -8.0199 44 1 2.0784 -3.2343 -7.7450 45 1 0.1573 -5.2461 -6.5934 46 1 -0.0781 -3.5018 -6.8886 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264115891.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:03 Heat of formation + Delta-G solvation = -76.802445 kcal Electronic energy + Delta-G solvation = -26874.529554 eV Core-core repulsion = 23148.853519 eV Total energy + Delta-G solvation = -3725.676035 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39262 -40.63118 -40.08866 -36.83471 -34.87623 -34.42059 -33.37771 -33.01917 -32.70793 -29.82357 -29.30941 -27.56241 -25.26920 -24.67286 -24.31602 -23.03333 -22.44243 -21.75408 -19.88963 -18.70721 -18.05771 -17.82757 -17.70224 -17.13555 -16.99647 -16.65209 -16.53010 -16.17941 -16.09773 -15.51854 -14.95132 -14.70665 -14.39076 -14.22251 -14.18991 -14.04868 -13.91719 -13.56252 -13.49208 -13.07249 -12.87263 -12.72169 -12.64327 -12.61360 -12.47937 -12.31840 -12.03017 -11.83806 -11.77596 -11.69947 -11.64039 -10.84519 -10.75891 -10.57797 -10.42493 -10.37298 -9.94419 -9.48701 -8.18142 -6.33762 0.13540 0.39598 1.42563 1.44143 1.52017 1.74354 2.26165 2.44780 2.92939 2.99294 3.11866 3.38127 3.59059 3.68591 3.81768 3.96139 4.02639 4.03809 4.15172 4.18520 4.23024 4.26161 4.36161 4.42879 4.55426 4.59452 4.69141 4.76994 4.78898 4.85179 4.87262 4.87925 4.92162 4.94522 5.04365 5.13126 5.22896 5.25039 5.25230 5.27692 5.34124 5.63520 5.78842 5.83181 6.06563 6.18155 6.55526 6.80591 7.12616 7.27972 7.40118 8.88153 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007227 B = 0.005146 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3873.302728 B = 5439.743176 C = 8283.334864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.019 3.981 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.261 3.739 10 N -0.591 5.591 11 C 0.167 3.833 12 C 0.094 3.906 13 C -0.161 4.161 14 C -0.079 4.079 15 C -0.164 4.164 16 C 0.078 3.922 17 N -0.508 5.508 18 C 0.514 3.486 19 O -0.583 6.583 20 C -0.123 4.123 21 C -0.086 4.086 22 C 0.075 3.925 23 H 0.069 0.931 24 C -0.145 4.145 25 C -0.147 4.147 26 C 0.038 3.962 27 O -0.410 6.410 28 H 0.267 0.733 29 H 0.019 0.981 30 H 0.017 0.983 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.136 0.864 34 H 0.167 0.833 35 H 0.173 0.827 36 H 0.174 0.826 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.740 -13.281 -7.400 15.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.181 4.181 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.075 0.925 9 C 0.140 3.860 10 N -0.321 5.321 11 C 0.043 3.957 12 C -0.044 4.044 13 C -0.181 4.181 14 C -0.104 4.104 15 C -0.184 4.184 16 C -0.079 4.079 17 N -0.218 5.218 18 C 0.304 3.696 19 O -0.466 6.466 20 C -0.163 4.163 21 C -0.124 4.124 22 C 0.018 3.982 23 H 0.086 0.914 24 C -0.182 4.182 25 C -0.184 4.184 26 C -0.038 4.038 27 O -0.331 6.331 28 H 0.076 0.924 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.154 0.846 34 H 0.185 0.815 35 H 0.190 0.810 36 H 0.191 0.809 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.118 0.882 42 H 0.100 0.900 43 H 0.120 0.880 44 H 0.103 0.897 45 H 0.091 0.909 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.646 -12.729 -7.032 14.780 hybrid contribution 0.206 0.479 0.024 0.522 sum 2.851 -12.249 -7.008 14.398 Atomic orbital electron populations 1.70049 1.07493 1.28200 1.50364 1.25731 0.95568 1.02560 0.94276 0.85567 0.78346 0.78490 0.79044 1.19193 1.20719 1.19662 1.21635 0.93344 0.91421 1.52058 0.92501 1.18984 0.87383 0.82834 0.96820 1.48166 1.45141 1.34043 1.04730 1.20139 0.95663 0.93704 0.86160 1.21637 0.93468 0.94487 0.94801 1.22161 1.02069 0.93188 1.00711 1.21996 0.93161 1.00650 0.94625 1.22525 0.98658 0.97928 0.99265 1.23283 0.98029 0.89679 0.96890 1.67492 1.03868 1.39544 1.10865 1.20950 0.80298 0.82014 0.86327 1.90522 1.36889 1.30873 1.88271 1.21487 1.01618 1.01580 0.91573 1.21397 1.00400 0.99302 0.91321 1.23119 0.80802 0.99057 0.95244 0.91350 1.23284 0.99815 1.01818 0.93315 1.23107 0.92891 1.04217 0.98204 1.23324 0.98257 1.01220 0.81021 1.88452 1.25509 1.91595 1.27503 0.92396 0.96303 0.96451 0.90249 0.88641 0.84645 0.81542 0.80968 0.80923 0.90443 0.89254 0.89650 0.91771 0.88152 0.89956 0.87964 0.89708 0.90853 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.75 13.29 21.45 0.28 -53.46 16 2 C 0.02 1.03 5.46 84.65 0.46 1.50 16 3 Si 0.96 43.17 29.54 68.60 2.03 45.20 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.55 -29.92 9.28 25.60 0.24 -29.68 16 8 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 9 C 0.26 13.69 4.96 85.63 0.43 14.11 16 10 N -0.59 -27.02 2.44 -830.51 -2.03 -29.04 16 11 C 0.17 6.88 5.71 85.63 0.49 7.37 16 12 C 0.09 3.57 6.36 42.55 0.27 3.84 16 13 C -0.16 -5.12 9.72 22.36 0.22 -4.90 16 14 C -0.08 -1.91 10.18 22.47 0.23 -1.68 16 15 C -0.16 -3.74 10.11 22.36 0.23 -3.52 16 16 C 0.08 2.31 11.18 84.67 0.95 3.25 16 17 N -0.51 -19.62 10.27 -183.89 -1.89 -21.50 16 18 C 0.51 22.36 7.67 87.65 0.67 23.03 16 19 O -0.58 -25.44 15.54 -3.04 -0.05 -25.49 16 20 C -0.12 -4.89 4.17 29.85 0.12 -4.77 16 21 C -0.09 -2.77 4.25 30.59 0.13 -2.64 16 22 C 0.07 2.09 3.43 31.26 0.11 2.19 16 23 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 24 C -0.14 -2.83 6.57 32.05 0.21 -2.62 16 25 C -0.15 -2.43 7.02 31.85 0.22 -2.20 16 26 C 0.04 0.85 7.79 72.45 0.56 1.41 16 27 O -0.41 -12.99 10.69 -148.98 -1.59 -14.58 16 28 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 29 H 0.02 1.05 6.44 -2.39 -0.02 1.04 16 30 H 0.02 1.00 8.07 -2.39 -0.02 0.98 16 31 H 0.08 3.42 8.07 -2.38 -0.02 3.40 16 32 H 0.10 3.67 7.32 -2.39 -0.02 3.65 16 33 H 0.14 4.26 8.04 -2.91 -0.02 4.24 16 34 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 35 H 0.17 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.17 4.07 8.06 -2.91 -0.02 4.05 16 37 H 0.08 3.32 7.16 -2.39 -0.02 3.30 16 38 H 0.09 3.76 8.00 -2.39 -0.02 3.74 16 39 H 0.08 2.60 8.10 -2.38 -0.02 2.58 16 40 H 0.06 2.13 8.10 -2.39 -0.02 2.11 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.08 1.56 8.06 -2.39 -0.02 1.55 16 43 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 45 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -69.57 383.47 3.24 -66.33 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.95 Total: 27.85 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 5.54 Total: 4.70 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -3.63 Total: -104.01 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -1.64 Total: -40.07 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -69.57 3.24 -66.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264115891.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.474 kcal (2) G-P(sol) polarization free energy of solvation -69.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds