Wall clock time and date at job start Tue Mar 31 2020 12:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 110.66807 * 2 1 4 4 C 1.54704 * 110.75043 * 236.58024 * 2 1 3 5 5 C 1.51649 * 101.94389 * 266.98381 * 4 2 1 6 6 C 1.37711 * 132.09959 * 164.12434 * 5 4 2 7 7 C 1.38912 * 119.92380 * 180.91889 * 6 5 4 8 8 N 1.40156 * 120.18718 * 179.97438 * 7 6 5 9 9 C 1.34773 * 119.99668 * 35.05927 * 8 7 6 10 10 O 1.21590 * 120.00518 * 355.35086 * 9 8 7 11 11 N 1.34780 * 119.99516 * 175.08378 * 9 8 7 12 12 C 1.46509 * 119.99644 * 180.27561 * 11 9 8 13 13 C 1.52996 * 109.46783 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47149 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47389 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99833 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00151 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00018 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00018 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47389 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47378 * 119.99877 * 19 17 15 22 22 H 1.48501 * 109.47124 * 239.99546 * 19 17 15 23 23 C 1.38849 * 119.62207 * 0.25190 * 7 6 5 24 24 C 1.37877 * 120.27673 * 359.32625 * 23 7 6 25 25 C 1.38877 * 107.05038 * 344.65157 * 5 4 2 26 26 O 1.36241 * 111.20515 * 358.84948 * 25 5 4 27 27 H 1.08999 * 109.47054 * 298.23719 * 1 2 3 28 28 H 1.09006 * 109.47038 * 58.23345 * 1 2 3 29 29 H 1.09005 * 109.47202 * 178.23220 * 1 2 3 30 30 H 1.09000 * 109.47288 * 181.76400 * 3 2 1 31 31 H 1.09000 * 109.47506 * 301.76363 * 3 2 1 32 32 H 1.09003 * 109.47093 * 61.76321 * 3 2 1 33 33 H 1.09006 * 110.93352 * 148.81805 * 4 2 1 34 34 H 1.09006 * 110.93127 * 25.14803 * 4 2 1 35 35 H 1.07996 * 120.03364 * 0.90302 * 6 5 4 36 36 H 0.96995 * 120.00027 * 215.05370 * 8 7 6 37 37 H 0.96996 * 120.00163 * 0.26519 * 11 9 8 38 38 H 1.09002 * 109.46584 * 299.99469 * 12 11 9 39 39 H 1.08996 * 109.47210 * 59.99436 * 12 11 9 40 40 H 1.09008 * 109.47424 * 299.99519 * 13 12 11 41 41 H 1.09001 * 109.47933 * 59.99398 * 13 12 11 42 42 H 1.08994 * 109.47246 * 299.99802 * 14 13 12 43 43 H 1.09004 * 109.47144 * 60.00010 * 14 13 12 44 44 H 0.97000 * 120.00319 * 180.02562 * 18 17 15 45 45 H 1.08000 * 119.86272 * 179.57716 * 23 7 6 46 46 H 1.08001 * 119.83433 * 180.27191 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0700 1.4315 0.0000 4 6 2.0781 -0.7968 -1.2075 5 6 2.2623 -2.1798 -0.6133 6 6 2.4441 -3.4164 -1.1916 7 6 2.5699 -4.5442 -0.3905 8 7 2.7545 -5.8055 -0.9732 9 6 3.4808 -5.9264 -2.1021 10 8 3.9046 -4.9336 -2.6617 11 7 3.7418 -7.1482 -2.6077 12 6 4.5363 -7.2799 -3.8316 13 6 4.6843 -8.7608 -4.1865 14 6 5.5136 -8.8984 -5.4649 15 6 5.6599 -10.3571 -5.8142 16 1 5.2071 -11.1106 -5.1868 17 6 6.3727 -10.7296 -6.9340 18 7 6.9245 -9.8121 -7.6977 19 14 6.5535 -12.5376 -7.3673 20 1 5.8444 -13.3623 -6.3563 21 1 5.9673 -12.7862 -8.7089 22 1 7.9931 -12.9018 -7.3811 23 6 2.5059 -4.4157 0.9905 24 6 2.3324 -3.1748 1.5659 25 6 2.2091 -2.0403 0.7674 26 8 2.0393 -0.7366 1.1247 27 1 -0.3633 0.4862 0.9054 28 1 -0.3633 0.5411 -0.8738 29 1 -0.3634 -1.0272 -0.0317 30 1 3.1593 1.4090 -0.0316 31 1 1.6921 1.9625 -0.8737 32 1 1.7433 1.9431 0.9054 33 1 3.0306 -0.3874 -1.5442 34 1 1.3542 -0.8161 -2.0223 35 1 2.4885 -3.5091 -2.2667 36 1 2.3598 -6.5913 -0.5640 37 1 3.4037 -7.9402 -2.1614 38 1 4.0358 -6.7586 -4.6476 39 1 5.5228 -6.8442 -3.6730 40 1 5.1851 -9.2818 -3.3704 41 1 3.6980 -9.1969 -4.3449 42 1 5.0125 -8.3776 -6.2808 43 1 6.5000 -8.4623 -5.3069 44 1 7.4257 -10.0741 -8.4858 45 1 2.5964 -5.2909 1.6168 46 1 2.2881 -3.0825 2.6411 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268319574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:29 Heat of formation + Delta-G solvation = -50.585981 kcal Electronic energy + Delta-G solvation = -25402.267227 eV Core-core repulsion = 21677.728023 eV Total energy + Delta-G solvation = -3724.539204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.56779 -40.29571 -37.89699 -35.52320 -34.50925 -33.99068 -33.30847 -31.68617 -31.22728 -29.07291 -27.86037 -26.98967 -26.41984 -23.54807 -22.52423 -21.83985 -20.97675 -20.88256 -20.37654 -18.31276 -17.61993 -17.26078 -16.35144 -16.19355 -15.86456 -15.53470 -14.99619 -14.60444 -14.44620 -14.31909 -14.18128 -14.11746 -13.65541 -13.47304 -13.18351 -12.92473 -12.78244 -12.47726 -12.37264 -12.31641 -12.13024 -11.84262 -11.80076 -11.46264 -11.20810 -11.04729 -10.93779 -10.75992 -10.58680 -10.15561 -9.90790 -9.82661 -9.47884 -9.13678 -8.99411 -8.85288 -8.39399 -7.78798 -6.03766 -4.06928 1.08749 1.23807 2.61230 2.96491 3.14533 3.28607 3.36237 3.39549 3.61525 4.09625 4.15799 4.31767 4.43201 4.43907 4.66726 4.74945 4.89055 5.06661 5.13191 5.20170 5.26998 5.30813 5.32151 5.41105 5.51704 5.53574 5.62192 5.68421 5.75868 5.78620 5.79545 5.86794 6.12862 6.16644 6.23593 6.30348 6.44351 6.57454 6.65027 6.74399 6.95045 6.98796 7.07975 7.61631 7.73744 7.94936 7.96902 8.35580 8.57309 8.99941 9.57424 11.07528 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.033202 B = 0.001837 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.116975 B =15242.687781 C =15805.967344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.101 3.899 3 C -0.141 4.141 4 C -0.100 4.100 5 C -0.154 4.154 6 C -0.070 4.070 7 C 0.144 3.856 8 N -0.688 5.688 9 C 0.699 3.301 10 O -0.576 6.576 11 N -0.735 5.735 12 C 0.134 3.866 13 C -0.121 4.121 14 C 0.023 3.977 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.116 4.116 24 C -0.120 4.120 25 C 0.085 3.915 26 O -0.299 6.299 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.145 0.855 36 H 0.406 0.594 37 H 0.396 0.604 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.261 0.739 45 H 0.133 0.867 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.347 18.164 19.408 30.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.063 3.937 3 C -0.198 4.198 4 C -0.137 4.137 5 C -0.155 4.155 6 C -0.091 4.091 7 C 0.048 3.952 8 N -0.337 5.337 9 C 0.399 3.601 10 O -0.453 6.453 11 N -0.389 5.389 12 C 0.011 3.989 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.136 4.136 24 C -0.140 4.140 25 C 0.040 3.960 26 O -0.214 6.214 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.163 0.837 36 H 0.241 0.759 37 H 0.229 0.771 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.070 0.930 45 H 0.151 0.849 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.759 19.151 18.857 30.194 hybrid contribution -0.133 -1.881 -0.054 1.886 sum -13.891 17.270 18.803 29.065 Atomic orbital electron populations 1.22190 0.93510 1.03178 1.03048 1.22721 0.94248 0.92879 0.83820 1.21835 1.02098 0.92749 1.03151 1.21881 1.02779 0.91062 0.98003 1.20588 1.06130 0.95065 0.93728 1.20471 0.97690 0.89468 1.01450 1.17244 1.02088 0.84739 0.91080 1.42574 1.55228 1.08247 1.27614 1.16011 0.79030 0.84667 0.80368 1.90919 1.56924 1.36315 1.61181 1.45413 1.57722 1.05841 1.29955 1.21579 0.94453 0.99206 0.83663 1.21901 1.01214 0.91573 1.01180 1.19036 0.94736 0.97179 0.90476 1.21236 1.33100 0.92251 1.09463 0.92583 1.25036 0.95604 0.97510 0.96372 1.69974 1.34960 1.32677 1.15609 0.86521 0.77808 0.85265 0.78294 1.19774 1.20998 1.20999 1.20546 1.03181 0.97264 0.92646 1.19928 1.05787 0.88757 0.99483 1.19473 0.98823 0.84960 0.92767 1.86874 1.80280 1.16445 1.37765 0.91397 0.90711 0.91786 0.91359 0.90315 0.91315 0.88917 0.89019 0.83744 0.75885 0.77073 0.91735 0.91726 0.92680 0.92691 0.96209 0.96207 0.92962 0.84908 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 8.84 37.16 0.33 -0.79 16 2 C 0.10 0.85 1.26 -89.73 -0.11 0.74 16 3 C -0.14 -0.89 8.96 37.16 0.33 -0.56 16 4 C -0.10 -0.94 6.18 -26.52 -0.16 -1.10 16 5 C -0.15 -1.84 6.26 -104.11 -0.65 -2.49 16 6 C -0.07 -0.94 8.69 -39.52 -0.34 -1.28 16 7 C 0.14 1.72 6.31 -83.57 -0.53 1.19 16 8 N -0.69 -7.66 5.36 -14.16 -0.08 -7.73 16 9 C 0.70 10.37 8.41 -86.92 -0.73 9.64 16 10 O -0.58 -10.83 13.79 5.29 0.07 -10.76 16 11 N -0.74 -10.15 5.56 -65.22 -0.36 -10.51 16 12 C 0.13 2.30 5.67 -4.04 -0.02 2.28 16 13 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 14 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 15 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 16 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 19 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 C -0.12 -1.13 9.94 -39.49 -0.39 -1.53 16 24 C -0.12 -1.23 10.06 -39.32 -0.40 -1.63 16 25 C 0.09 1.00 6.94 -38.96 -0.27 0.73 16 26 O -0.30 -3.35 10.53 -20.51 -0.22 -3.57 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.51 8.12 -51.93 -0.42 0.08 16 30 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.84 7.91 -51.93 -0.41 0.43 16 34 H 0.09 0.73 7.92 -51.93 -0.41 0.32 16 35 H 0.14 2.18 6.23 -52.49 -0.33 1.85 16 36 H 0.41 3.02 8.84 -40.82 -0.36 2.66 16 37 H 0.40 4.20 8.49 -40.82 -0.35 3.85 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.01 8.14 -51.92 -0.42 0.58 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 380.95 15.07 5.74 5.74 Total: -1.00 -33.78 380.95 -10.08 -43.86 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -7.31 Total: 2.60 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -3.64 Total: -10.04 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.30 Total: -44.17 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.14 Total: -14.32 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.78 -10.08 -43.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268319574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.728 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds