Wall clock time and date at job start Tue Mar 31 2020 12:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 110.66807 * 2 1 4 4 C 1.54704 * 110.75043 * 236.58024 * 2 1 3 5 5 C 1.51649 * 101.94389 * 266.98381 * 4 2 1 6 6 C 1.37711 * 132.09959 * 164.12434 * 5 4 2 7 7 C 1.38912 * 119.92380 * 180.91889 * 6 5 4 8 8 N 1.40156 * 120.18718 * 179.97438 * 7 6 5 9 9 C 1.34773 * 119.99668 * 35.05927 * 8 7 6 10 10 O 1.21590 * 120.00518 * 355.35086 * 9 8 7 11 11 N 1.34780 * 119.99516 * 175.08378 * 9 8 7 12 12 C 1.46509 * 119.99644 * 180.27561 * 11 9 8 13 13 C 1.52996 * 109.46783 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47149 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47389 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99833 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00151 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00018 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00018 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47389 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47378 * 119.99877 * 19 17 15 22 22 H 1.48501 * 109.47124 * 239.99546 * 19 17 15 23 23 C 1.38849 * 119.62207 * 0.25190 * 7 6 5 24 24 C 1.37877 * 120.27673 * 359.32625 * 23 7 6 25 25 C 1.38877 * 107.05038 * 344.65157 * 5 4 2 26 26 O 1.36241 * 111.20515 * 358.84948 * 25 5 4 27 27 H 1.08999 * 109.47054 * 298.23719 * 1 2 3 28 28 H 1.09006 * 109.47038 * 58.23345 * 1 2 3 29 29 H 1.09005 * 109.47202 * 178.23220 * 1 2 3 30 30 H 1.09000 * 109.47288 * 181.76400 * 3 2 1 31 31 H 1.09000 * 109.47506 * 301.76363 * 3 2 1 32 32 H 1.09003 * 109.47093 * 61.76321 * 3 2 1 33 33 H 1.09006 * 110.93352 * 148.81805 * 4 2 1 34 34 H 1.09006 * 110.93127 * 25.14803 * 4 2 1 35 35 H 1.07996 * 120.03364 * 0.90302 * 6 5 4 36 36 H 0.96995 * 120.00027 * 215.05370 * 8 7 6 37 37 H 0.96996 * 120.00163 * 0.26519 * 11 9 8 38 38 H 1.09002 * 109.46584 * 299.99469 * 12 11 9 39 39 H 1.08996 * 109.47210 * 59.99436 * 12 11 9 40 40 H 1.09008 * 109.47424 * 299.99519 * 13 12 11 41 41 H 1.09001 * 109.47933 * 59.99398 * 13 12 11 42 42 H 1.08994 * 109.47246 * 299.99802 * 14 13 12 43 43 H 1.09004 * 109.47144 * 60.00010 * 14 13 12 44 44 H 0.97000 * 120.00319 * 180.02562 * 18 17 15 45 45 H 1.08000 * 119.86272 * 179.57716 * 23 7 6 46 46 H 1.08001 * 119.83433 * 180.27191 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0700 1.4315 0.0000 4 6 2.0781 -0.7968 -1.2075 5 6 2.2623 -2.1798 -0.6133 6 6 2.4441 -3.4164 -1.1916 7 6 2.5699 -4.5442 -0.3905 8 7 2.7545 -5.8055 -0.9732 9 6 3.4808 -5.9264 -2.1021 10 8 3.9046 -4.9336 -2.6617 11 7 3.7418 -7.1482 -2.6077 12 6 4.5363 -7.2799 -3.8316 13 6 4.6843 -8.7608 -4.1865 14 6 5.5136 -8.8984 -5.4649 15 6 5.6599 -10.3571 -5.8142 16 1 5.2071 -11.1106 -5.1868 17 6 6.3727 -10.7296 -6.9340 18 7 6.9245 -9.8121 -7.6977 19 14 6.5535 -12.5376 -7.3673 20 1 5.8444 -13.3623 -6.3563 21 1 5.9673 -12.7862 -8.7089 22 1 7.9931 -12.9018 -7.3811 23 6 2.5059 -4.4157 0.9905 24 6 2.3324 -3.1748 1.5659 25 6 2.2091 -2.0403 0.7674 26 8 2.0393 -0.7366 1.1247 27 1 -0.3633 0.4862 0.9054 28 1 -0.3633 0.5411 -0.8738 29 1 -0.3634 -1.0272 -0.0317 30 1 3.1593 1.4090 -0.0316 31 1 1.6921 1.9625 -0.8737 32 1 1.7433 1.9431 0.9054 33 1 3.0306 -0.3874 -1.5442 34 1 1.3542 -0.8161 -2.0223 35 1 2.4885 -3.5091 -2.2667 36 1 2.3598 -6.5913 -0.5640 37 1 3.4037 -7.9402 -2.1614 38 1 4.0358 -6.7586 -4.6476 39 1 5.5228 -6.8442 -3.6730 40 1 5.1851 -9.2818 -3.3704 41 1 3.6980 -9.1969 -4.3449 42 1 5.0125 -8.3776 -6.2808 43 1 6.5000 -8.4623 -5.3069 44 1 7.4257 -10.0741 -8.4858 45 1 2.5964 -5.2909 1.6168 46 1 2.2881 -3.0825 2.6411 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268319574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:27 Heat of formation + Delta-G solvation = -72.118220 kcal Electronic energy + Delta-G solvation = -25403.200935 eV Core-core repulsion = 21677.728023 eV Total energy + Delta-G solvation = -3725.472912 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.37806 -41.38512 -38.84230 -36.98223 -35.54000 -35.19473 -34.70959 -33.00055 -32.41623 -30.11002 -28.43308 -28.37665 -27.48617 -25.15918 -23.64696 -22.73066 -22.34158 -21.79621 -21.60568 -19.43811 -18.70260 -18.32892 -18.07883 -17.08706 -16.79746 -16.63495 -16.48267 -16.09642 -15.63327 -15.41464 -15.39171 -14.81813 -14.67155 -14.29033 -14.24853 -13.90280 -13.74686 -13.72814 -13.50455 -13.42913 -13.16818 -12.91400 -12.80192 -12.74083 -12.54727 -12.33982 -12.21869 -11.97814 -11.80522 -11.67318 -11.57770 -11.27122 -11.13321 -10.77569 -10.55813 -10.13719 -9.84868 -8.67567 -8.19336 -6.30634 0.23381 0.34502 1.42076 1.42177 1.52652 1.55911 1.98971 2.25086 2.42081 2.74007 3.14650 3.14761 3.44547 3.53960 3.83381 3.93211 4.03803 4.15386 4.16868 4.23206 4.29794 4.53494 4.55820 4.61812 4.62534 4.69060 4.72126 4.83876 4.88280 4.94134 4.95797 5.03611 5.05917 5.16516 5.18568 5.26448 5.29917 5.37456 5.41724 5.46831 5.53841 5.71715 5.76398 5.84977 5.94975 6.22846 6.25323 6.87040 6.98714 7.38988 7.45065 8.92966 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.033202 B = 0.001837 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.116975 B =15242.687781 C =15805.967344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.097 3.903 3 C -0.139 4.139 4 C -0.103 4.103 5 C -0.169 4.169 6 C -0.093 4.093 7 C 0.125 3.875 8 N -0.668 5.668 9 C 0.697 3.303 10 O -0.620 6.620 11 N -0.722 5.722 12 C 0.149 3.851 13 C -0.101 4.101 14 C 0.022 3.978 15 C -0.539 4.539 16 H 0.068 0.932 17 C -0.005 4.005 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.258 1.258 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.101 4.101 24 C -0.122 4.122 25 C 0.075 3.925 26 O -0.312 6.312 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.426 0.574 37 H 0.415 0.585 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.070 0.930 42 H -0.007 1.007 43 H -0.008 1.008 44 H 0.263 0.737 45 H 0.168 0.832 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.666 17.169 21.619 31.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.060 3.940 3 C -0.196 4.196 4 C -0.140 4.140 5 C -0.171 4.171 6 C -0.114 4.114 7 C 0.030 3.970 8 N -0.317 5.317 9 C 0.397 3.603 10 O -0.500 6.500 11 N -0.377 5.377 12 C 0.025 3.975 13 C -0.138 4.138 14 C -0.016 4.016 15 C -0.577 4.577 16 H 0.086 0.914 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.792 3.208 20 H -0.181 1.181 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.122 4.122 24 C -0.141 4.141 25 C 0.029 3.971 26 O -0.227 6.227 27 H 0.093 0.907 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.136 0.864 36 H 0.265 0.735 37 H 0.252 0.748 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.011 0.989 43 H 0.010 0.990 44 H 0.072 0.928 45 H 0.186 0.814 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -15.125 18.124 21.129 31.681 hybrid contribution 0.258 -1.479 -0.709 1.661 sum -14.867 16.645 20.420 30.250 Atomic orbital electron populations 1.22182 0.92254 1.02738 1.04359 1.22988 0.95249 0.93408 0.82401 1.21873 1.01653 0.91553 1.04515 1.21981 1.03054 0.90126 0.98858 1.20816 1.06170 0.95553 0.94530 1.20404 0.99613 0.90923 1.00423 1.17455 1.03059 0.84433 0.92051 1.42267 1.54168 1.09010 1.26292 1.16135 0.79098 0.84064 0.80988 1.90906 1.58684 1.37804 1.62654 1.45006 1.57238 1.06546 1.28941 1.21124 0.94026 0.97665 0.84698 1.21593 1.00884 0.92865 0.98506 1.18955 0.94112 0.95829 0.92655 1.21717 1.32814 0.93522 1.09658 0.91426 1.26034 0.95285 1.02534 0.96398 1.70119 1.35961 1.35222 1.16265 0.85358 0.77870 0.79306 0.78246 1.18133 1.20643 1.20673 1.20857 1.01179 0.98385 0.91742 1.20326 1.04657 0.88395 1.00705 1.19768 0.98861 0.85656 0.92811 1.86853 1.80524 1.16359 1.38987 0.90659 0.88764 0.93118 0.92105 0.88239 0.90587 0.89208 0.88077 0.86421 0.73483 0.74794 0.93236 0.93388 0.91219 0.91165 0.98890 0.98955 0.92848 0.81427 0.82829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.84 71.98 0.64 -1.35 16 2 C 0.10 1.56 1.26 -10.21 -0.01 1.55 16 3 C -0.14 -1.57 8.96 71.98 0.65 -0.93 16 4 C -0.10 -1.97 6.18 30.73 0.19 -1.78 16 5 C -0.17 -4.14 6.26 -19.53 -0.12 -4.26 16 6 C -0.09 -2.57 8.69 22.31 0.19 -2.37 16 7 C 0.12 2.89 6.31 38.12 0.24 3.14 16 8 N -0.67 -13.99 5.36 -316.99 -1.70 -15.69 16 9 C 0.70 20.52 8.41 179.05 1.51 22.03 16 10 O -0.62 -24.17 13.79 -4.00 -0.06 -24.22 16 11 N -0.72 -19.19 5.56 -478.52 -2.66 -21.85 16 12 C 0.15 5.19 5.67 86.38 0.49 5.68 16 13 C -0.10 -3.76 5.27 30.59 0.16 -3.60 16 14 C 0.02 1.14 4.97 29.85 0.15 1.29 16 15 C -0.54 -29.80 9.11 25.60 0.23 -29.57 16 16 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 17 C -0.01 -0.28 5.46 84.65 0.46 0.18 16 18 N -0.94 -57.03 13.29 21.45 0.28 -56.74 16 19 Si 0.97 43.58 29.54 68.60 2.03 45.61 16 20 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 23 C -0.10 -1.75 9.94 22.33 0.22 -1.53 16 24 C -0.12 -2.26 10.06 22.44 0.23 -2.03 16 25 C 0.07 1.70 6.94 22.68 0.16 1.86 16 26 O -0.31 -6.78 10.53 -96.30 -1.01 -7.79 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.05 0.77 8.12 -2.38 -0.02 0.75 16 30 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 31 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 1.71 7.91 -2.38 -0.02 1.69 16 34 H 0.10 1.65 7.92 -2.38 -0.02 1.64 16 35 H 0.12 3.84 6.23 -2.91 -0.02 3.83 16 36 H 0.43 5.23 8.84 -92.71 -0.82 4.41 16 37 H 0.42 7.80 8.49 -92.71 -0.79 7.01 16 38 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 41 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 42 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 43 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 44 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 45 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 46 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -75.54 380.95 1.65 -73.89 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -0.61 Total: 18.51 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 5.38 Total: -11.71 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -4.07 Total: -94.29 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -1.07 Total: -32.02 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -75.54 1.65 -73.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268319574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.775 kcal (2) G-P(sol) polarization free energy of solvation -75.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds