Wall clock time and date at job start Tue Mar 31 2020 12:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86810 * 119.99876 * 2 1 4 4 H 1.48493 * 109.47005 * 269.99975 * 3 2 1 5 5 H 1.48501 * 109.47040 * 29.99913 * 3 2 1 6 6 H 1.48500 * 109.46752 * 149.99767 * 3 2 1 7 7 C 1.38804 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00288 * 163.08058 * 7 2 1 9 9 N 1.36939 * 119.99958 * 343.08098 * 7 2 1 10 10 C 1.46924 * 120.62993 * 331.83412 * 9 7 2 11 11 C 1.53192 * 108.77591 * 233.58522 * 10 9 7 12 12 C 1.53036 * 109.31293 * 305.36430 * 11 10 9 13 13 C 1.53038 * 109.54003 * 61.36202 * 12 11 10 14 14 H 1.09005 * 109.49603 * 58.62146 * 13 12 11 15 15 C 1.53007 * 109.50110 * 178.68265 * 13 12 11 16 16 N 1.46499 * 109.47178 * 185.00202 * 15 13 12 17 17 C 1.34774 * 120.00141 * 180.02562 * 16 15 13 18 18 O 1.21617 * 119.99788 * 359.97438 * 17 16 15 19 19 C 1.47377 * 120.00338 * 180.02562 * 17 16 15 20 20 C 1.47018 * 127.19147 * 0.02562 * 19 17 16 21 21 C 1.34172 * 105.95850 * 180.02562 * 20 19 17 22 22 O 1.34218 * 109.12327 * 359.97438 * 21 20 19 23 23 C 1.33660 * 110.90551 * 359.72923 * 22 21 20 24 24 C 1.50700 * 125.80257 * 180.28744 * 23 22 21 25 25 C 1.53003 * 117.49661 * 8.93727 * 24 23 22 26 26 C 1.53000 * 117.49804 * 300.27553 * 24 23 22 27 27 C 1.46920 * 120.63092 * 151.55029 * 9 7 2 28 28 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.58627 * 353.37206 * 10 9 7 30 30 H 1.08997 * 109.58757 * 113.65672 * 10 9 7 31 31 H 1.08996 * 109.49789 * 65.31574 * 11 10 9 32 32 H 1.09005 * 109.49945 * 185.38058 * 11 10 9 33 33 H 1.08998 * 109.46142 * 181.38594 * 12 11 10 34 34 H 1.09004 * 109.46070 * 301.35904 * 12 11 10 35 35 H 1.08996 * 109.46808 * 305.00311 * 15 13 12 36 36 H 1.09003 * 109.46608 * 65.00470 * 15 13 12 37 37 H 0.97003 * 120.00046 * 0.02562 * 16 15 13 38 38 H 1.08012 * 127.02210 * 0.02562 * 20 19 17 39 39 H 1.08000 * 125.44079 * 180.02562 * 21 20 19 40 40 H 1.08996 * 115.54800 * 154.60249 * 24 23 22 41 41 H 1.08995 * 117.49746 * 359.97438 * 25 24 23 42 42 H 1.09005 * 117.49818 * 145.02485 * 25 24 23 43 43 H 1.09000 * 117.49631 * 214.97699 * 26 24 23 44 44 H 1.09001 * 117.50136 * 359.97438 * 26 24 23 45 45 H 1.08999 * 109.58855 * 246.20212 * 27 9 7 46 46 H 1.08998 * 109.58990 * 6.63087 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2717 9 7 1.3701 -2.3622 0.3462 10 6 0.2262 -2.3399 1.2679 11 6 0.4976 -3.3191 2.4143 12 6 0.8120 -4.7007 1.8361 13 6 2.0672 -4.6173 0.9647 14 1 2.9025 -4.2542 1.5637 15 6 2.3996 -6.0055 0.4136 16 7 3.6656 -5.9489 -0.3213 17 6 4.1600 -7.0618 -0.8987 18 8 3.5554 -8.1132 -0.8092 19 6 5.4339 -7.0050 -1.6376 20 6 6.2908 -5.8281 -1.8424 21 6 7.3347 -6.2539 -2.5698 22 8 7.1905 -7.5645 -2.8206 23 6 6.0675 -8.0349 -2.2691 24 6 5.5816 -9.4597 -2.3374 25 6 6.5365 -10.5047 -2.9181 26 6 5.3168 -10.0502 -3.7238 27 6 1.8101 -3.6521 -0.2025 28 1 -0.4850 0.8400 -0.0004 29 1 0.0994 -1.3342 1.6687 30 1 -0.6774 -2.6379 0.7362 31 1 1.3473 -2.9677 2.9995 32 1 -0.3828 -3.3836 3.0539 33 1 0.9813 -5.4052 2.6504 34 1 -0.0282 -5.0407 1.2306 35 1 2.4897 -6.7119 1.2388 36 1 1.6042 -6.3300 -0.2573 37 1 4.1481 -5.1103 -0.3924 38 1 6.1157 -4.8253 -1.4811 39 1 8.1598 -5.6402 -2.9000 40 1 4.9274 -9.7728 -1.5236 41 1 7.5159 -10.1615 -3.2511 42 1 6.5101 -11.5054 -2.4867 43 1 4.4886 -10.7520 -3.8220 44 1 5.4936 -9.4080 -4.5865 45 1 1.0335 -4.0574 -0.8511 46 1 2.7288 -3.5126 -0.7722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281942557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:03 Heat of formation + Delta-G solvation = 13.695703 kcal Electronic energy + Delta-G solvation = -26512.681434 eV Core-core repulsion = 22790.929693 eV Total energy + Delta-G solvation = -3721.751741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.75975 -39.39845 -37.75182 -37.29631 -34.76659 -33.26959 -32.74298 -30.45523 -30.31068 -29.84249 -25.92978 -25.28283 -23.60114 -23.00421 -22.64011 -22.06365 -21.12753 -20.49913 -19.82786 -19.02451 -17.97245 -16.70664 -16.45516 -16.16349 -15.71764 -15.52585 -15.13034 -14.84448 -14.71724 -14.11799 -13.80293 -13.64649 -13.43870 -13.07651 -12.78025 -12.74764 -12.40115 -12.25755 -12.17735 -12.16179 -11.85746 -11.28337 -11.18303 -11.03234 -10.73725 -10.71181 -10.50561 -10.25458 -10.18917 -9.98486 -9.94571 -9.87354 -9.56772 -9.42404 -8.92711 -8.59289 -8.48070 -6.68281 -5.80947 -3.24115 1.19450 1.91717 2.56112 3.33418 3.34710 3.36877 3.42060 3.43686 3.65459 4.12472 4.46137 4.48119 4.65502 4.68706 4.75479 5.02948 5.12849 5.27213 5.29759 5.33306 5.43846 5.46684 5.51449 5.57029 5.62466 5.79072 5.82248 5.83673 5.86311 5.97551 6.00809 6.12797 6.24550 6.33222 6.37153 6.55039 6.58965 6.70401 6.77559 6.85649 6.85696 6.96471 7.38919 7.65225 7.67003 7.76403 8.33376 8.42817 9.18918 9.82476 10.39686 11.27259 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016796 B = 0.002930 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.621069 B = 9555.350087 C =10804.563830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.141 4.141 12 C -0.099 4.099 13 C -0.118 4.118 14 H 0.073 0.927 15 C 0.128 3.872 16 N -0.715 5.715 17 C 0.588 3.412 18 O -0.548 6.548 19 C -0.233 4.233 20 C -0.185 4.185 21 C -0.040 4.040 22 O -0.177 6.177 23 C 0.103 3.897 24 C -0.086 4.086 25 C -0.172 4.172 26 C -0.160 4.160 27 C 0.154 3.846 28 H 0.254 0.746 29 H 0.086 0.914 30 H 0.018 0.982 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.403 0.597 38 H 0.160 0.840 39 H 0.209 0.791 40 H 0.152 0.848 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.019 0.981 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.359 -16.399 -2.955 20.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.384 4.384 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.180 4.180 12 C -0.137 4.137 13 C -0.139 4.139 14 H 0.091 0.909 15 C 0.005 3.995 16 N -0.366 5.366 17 C 0.376 3.624 18 O -0.428 6.428 19 C -0.238 4.238 20 C -0.204 4.204 21 C -0.105 4.105 22 O -0.073 6.073 23 C 0.050 3.950 24 C -0.103 4.103 25 C -0.209 4.209 26 C -0.196 4.196 27 C 0.027 3.973 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.238 0.762 38 H 0.178 0.822 39 H 0.225 0.775 40 H 0.170 0.830 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.116 0.884 45 H 0.037 0.963 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.993 -17.120 -3.049 21.125 hybrid contribution 0.576 1.750 0.049 1.843 sum 12.569 -15.370 -3.000 20.081 Atomic orbital electron populations 1.70036 1.05289 1.25518 1.53723 1.25051 0.95268 0.98418 1.00851 0.86325 0.79172 0.83730 0.77700 1.21403 1.21548 1.20493 1.19135 0.92444 0.84832 1.41941 0.91822 1.44048 1.36001 1.01387 1.49937 1.20793 0.88544 0.98286 0.88063 1.22164 1.00091 0.95980 0.99811 1.21336 0.96733 0.97723 0.97949 1.22037 0.98832 0.93604 0.99379 0.90875 1.21474 0.84618 0.98028 0.95406 1.45860 1.24734 1.11525 1.54447 1.17160 0.83341 0.83781 0.78150 1.90727 1.60636 1.29782 1.61682 1.21137 0.99429 0.93817 1.09389 1.22958 0.94978 0.99421 1.03049 1.23854 1.02018 0.81337 1.03316 1.83707 1.37819 1.24785 1.60980 1.21659 0.84653 0.94501 0.94205 1.20811 1.03822 0.85140 1.00569 1.23083 0.95315 0.98906 1.03616 1.23067 1.00117 1.03003 0.93463 1.20982 0.97457 0.86827 0.91999 0.93611 0.89608 0.96437 0.92765 0.93183 0.93434 0.92464 0.91919 0.91498 0.76213 0.82216 0.77451 0.83037 0.88163 0.87751 0.87510 0.88420 0.96303 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 11.20 55.49 0.62 -25.32 16 2 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.25 -6.80 9.58 -15.06 -0.14 -6.95 16 8 H 0.06 1.65 7.89 -52.49 -0.41 1.24 16 9 N -0.59 -14.45 2.99 -172.06 -0.51 -14.97 16 10 C 0.17 3.98 5.30 -3.71 -0.02 3.96 16 11 C -0.14 -2.64 6.08 -26.61 -0.16 -2.81 16 12 C -0.10 -1.63 5.16 -26.69 -0.14 -1.77 16 13 C -0.12 -1.94 2.39 -90.27 -0.22 -2.16 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 15 C 0.13 1.91 5.07 -4.04 -0.02 1.89 16 16 N -0.72 -10.18 5.33 -61.40 -0.33 -10.51 16 17 C 0.59 8.95 7.81 -12.54 -0.10 8.86 16 18 O -0.55 -9.57 14.92 5.26 0.08 -9.49 16 19 C -0.23 -3.11 6.31 -103.28 -0.65 -3.77 16 20 C -0.18 -2.00 10.60 -37.46 -0.40 -2.40 16 21 C -0.04 -0.37 12.03 29.30 0.35 -0.01 16 22 O -0.18 -1.95 10.23 7.63 0.08 -1.87 16 23 C 0.10 1.27 6.85 -34.97 -0.24 1.03 16 24 C -0.09 -0.94 5.62 -91.77 -0.52 -1.45 16 25 C -0.17 -1.40 10.17 -26.69 -0.27 -1.67 16 26 C -0.16 -1.42 10.24 -26.69 -0.27 -1.69 16 27 C 0.15 3.11 5.63 -3.49 -0.02 3.09 16 28 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 29 H 0.09 2.27 6.06 -51.93 -0.31 1.95 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.40 5.24 6.89 -40.82 -0.28 4.96 16 38 H 0.16 1.46 7.74 -52.48 -0.41 1.06 16 39 H 0.21 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.15 1.84 6.66 -51.93 -0.35 1.49 16 41 H 0.10 0.79 7.96 -51.93 -0.41 0.37 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.05 0.96 7.16 -51.93 -0.37 0.59 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -31.64 373.77 -9.54 -41.17 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -7.18 Total: 4.94 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -2.90 Total: -5.85 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.22 Total: -50.80 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.16 Total: -11.36 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.64 -9.54 -41.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281942557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.870 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds