Wall clock time and date at job start Tue Mar 31 2020 12:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86810 * 119.99876 * 2 1 4 4 H 1.48493 * 109.47005 * 269.99975 * 3 2 1 5 5 H 1.48501 * 109.47040 * 29.99913 * 3 2 1 6 6 H 1.48500 * 109.46752 * 149.99767 * 3 2 1 7 7 C 1.38804 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00288 * 163.08058 * 7 2 1 9 9 N 1.36939 * 119.99958 * 343.08098 * 7 2 1 10 10 C 1.46924 * 120.62993 * 331.83412 * 9 7 2 11 11 C 1.53192 * 108.77591 * 233.58522 * 10 9 7 12 12 C 1.53036 * 109.31293 * 305.36430 * 11 10 9 13 13 C 1.53038 * 109.54003 * 61.36202 * 12 11 10 14 14 H 1.09005 * 109.49603 * 58.62146 * 13 12 11 15 15 C 1.53007 * 109.50110 * 178.68265 * 13 12 11 16 16 N 1.46499 * 109.47178 * 185.00202 * 15 13 12 17 17 C 1.34774 * 120.00141 * 180.02562 * 16 15 13 18 18 O 1.21617 * 119.99788 * 359.97438 * 17 16 15 19 19 C 1.47377 * 120.00338 * 180.02562 * 17 16 15 20 20 C 1.47018 * 127.19147 * 0.02562 * 19 17 16 21 21 C 1.34172 * 105.95850 * 180.02562 * 20 19 17 22 22 O 1.34218 * 109.12327 * 359.97438 * 21 20 19 23 23 C 1.33660 * 110.90551 * 359.72923 * 22 21 20 24 24 C 1.50700 * 125.80257 * 180.28744 * 23 22 21 25 25 C 1.53003 * 117.49661 * 8.93727 * 24 23 22 26 26 C 1.53000 * 117.49804 * 300.27553 * 24 23 22 27 27 C 1.46920 * 120.63092 * 151.55029 * 9 7 2 28 28 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.58627 * 353.37206 * 10 9 7 30 30 H 1.08997 * 109.58757 * 113.65672 * 10 9 7 31 31 H 1.08996 * 109.49789 * 65.31574 * 11 10 9 32 32 H 1.09005 * 109.49945 * 185.38058 * 11 10 9 33 33 H 1.08998 * 109.46142 * 181.38594 * 12 11 10 34 34 H 1.09004 * 109.46070 * 301.35904 * 12 11 10 35 35 H 1.08996 * 109.46808 * 305.00311 * 15 13 12 36 36 H 1.09003 * 109.46608 * 65.00470 * 15 13 12 37 37 H 0.97003 * 120.00046 * 0.02562 * 16 15 13 38 38 H 1.08012 * 127.02210 * 0.02562 * 20 19 17 39 39 H 1.08000 * 125.44079 * 180.02562 * 21 20 19 40 40 H 1.08996 * 115.54800 * 154.60249 * 24 23 22 41 41 H 1.08995 * 117.49746 * 359.97438 * 25 24 23 42 42 H 1.09005 * 117.49818 * 145.02485 * 25 24 23 43 43 H 1.09000 * 117.49631 * 214.97699 * 26 24 23 44 44 H 1.09001 * 117.50136 * 359.97438 * 26 24 23 45 45 H 1.08999 * 109.58855 * 246.20212 * 27 9 7 46 46 H 1.08998 * 109.58990 * 6.63087 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2717 9 7 1.3701 -2.3622 0.3462 10 6 0.2262 -2.3399 1.2679 11 6 0.4976 -3.3191 2.4143 12 6 0.8120 -4.7007 1.8361 13 6 2.0672 -4.6173 0.9647 14 1 2.9025 -4.2542 1.5637 15 6 2.3996 -6.0055 0.4136 16 7 3.6656 -5.9489 -0.3213 17 6 4.1600 -7.0618 -0.8987 18 8 3.5554 -8.1132 -0.8092 19 6 5.4339 -7.0050 -1.6376 20 6 6.2908 -5.8281 -1.8424 21 6 7.3347 -6.2539 -2.5698 22 8 7.1905 -7.5645 -2.8206 23 6 6.0675 -8.0349 -2.2691 24 6 5.5816 -9.4597 -2.3374 25 6 6.5365 -10.5047 -2.9181 26 6 5.3168 -10.0502 -3.7238 27 6 1.8101 -3.6521 -0.2025 28 1 -0.4850 0.8400 -0.0004 29 1 0.0994 -1.3342 1.6687 30 1 -0.6774 -2.6379 0.7362 31 1 1.3473 -2.9677 2.9995 32 1 -0.3828 -3.3836 3.0539 33 1 0.9813 -5.4052 2.6504 34 1 -0.0282 -5.0407 1.2306 35 1 2.4897 -6.7119 1.2388 36 1 1.6042 -6.3300 -0.2573 37 1 4.1481 -5.1103 -0.3924 38 1 6.1157 -4.8253 -1.4811 39 1 8.1598 -5.6402 -2.9000 40 1 4.9274 -9.7728 -1.5236 41 1 7.5159 -10.1615 -3.2511 42 1 6.5101 -11.5054 -2.4867 43 1 4.4886 -10.7520 -3.8220 44 1 5.4936 -9.4080 -4.5865 45 1 1.0335 -4.0574 -0.8511 46 1 2.7288 -3.5126 -0.7722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281942557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:02 Heat of formation + Delta-G solvation = -4.538207 kcal Electronic energy + Delta-G solvation = -26513.472115 eV Core-core repulsion = 22790.929693 eV Total energy + Delta-G solvation = -3722.542422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.59708 -40.61964 -39.27988 -38.04382 -36.23690 -34.72837 -33.88329 -32.30141 -31.80445 -30.68100 -27.37246 -27.09681 -24.66408 -23.87108 -23.73492 -23.31965 -22.52909 -21.56269 -21.02001 -20.37759 -18.93642 -18.57877 -17.32551 -17.12996 -16.91313 -16.74858 -16.40448 -16.28992 -15.74060 -15.57747 -15.31291 -15.01515 -14.74117 -14.52570 -14.02926 -14.00673 -13.73299 -13.59140 -13.49417 -13.08299 -13.00789 -12.86738 -12.48982 -12.47352 -12.27580 -11.98381 -11.92951 -11.83141 -11.59251 -11.50428 -11.32711 -11.10781 -10.95256 -10.83620 -10.52916 -10.09349 -9.43915 -8.67216 -7.86554 -5.32830 0.25756 1.11201 1.46928 1.48757 1.58124 1.74671 2.26895 2.28479 2.51409 2.89491 3.28426 3.38381 3.58552 3.71237 3.79327 3.92492 3.99096 4.00227 4.00739 4.07089 4.24008 4.40961 4.52511 4.56435 4.59723 4.70304 4.73890 4.78325 4.84383 4.87778 4.90063 5.00770 5.03205 5.08541 5.10544 5.17425 5.22942 5.32607 5.35050 5.39588 5.48663 5.57165 5.66933 5.78615 6.01129 6.39285 6.53529 7.15180 7.18688 7.86341 8.38853 9.19689 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016796 B = 0.002930 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.621069 B = 9555.350087 C =10804.563830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.967 3.033 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.261 4.261 8 H 0.071 0.929 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.129 4.129 12 C -0.097 4.097 13 C -0.100 4.100 14 H 0.077 0.923 15 C 0.139 3.861 16 N -0.711 5.711 17 C 0.585 3.415 18 O -0.577 6.577 19 C -0.264 4.264 20 C -0.201 4.201 21 C -0.026 4.026 22 O -0.178 6.178 23 C 0.099 3.901 24 C -0.114 4.114 25 C -0.150 4.150 26 C -0.156 4.156 27 C 0.153 3.847 28 H 0.249 0.751 29 H 0.051 0.949 30 H -0.008 1.008 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.409 0.591 38 H 0.173 0.827 39 H 0.251 0.749 40 H 0.134 0.866 41 H 0.106 0.894 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.097 0.903 45 H 0.005 0.995 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.731 -17.327 -2.899 22.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.795 3.205 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.392 4.392 8 H 0.088 0.912 9 N -0.332 5.332 10 C 0.047 3.953 11 C -0.168 4.168 12 C -0.135 4.135 13 C -0.120 4.120 14 H 0.095 0.905 15 C 0.015 3.985 16 N -0.362 5.362 17 C 0.374 3.626 18 O -0.460 6.460 19 C -0.268 4.268 20 C -0.220 4.220 21 C -0.091 4.091 22 O -0.074 6.074 23 C 0.046 3.954 24 C -0.132 4.132 25 C -0.187 4.187 26 C -0.193 4.193 27 C 0.028 3.972 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.010 0.990 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.245 0.755 38 H 0.190 0.810 39 H 0.267 0.733 40 H 0.152 0.848 41 H 0.124 0.876 42 H 0.141 0.859 43 H 0.135 0.865 44 H 0.116 0.884 45 H 0.022 0.978 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.395 -18.062 -2.991 23.289 hybrid contribution -0.150 2.002 -0.028 2.007 sum 14.244 -16.060 -3.020 21.678 Atomic orbital electron populations 1.70201 1.06814 1.25804 1.55497 1.25832 0.96001 1.01628 1.01339 0.85290 0.78180 0.79527 0.77532 1.21206 1.22156 1.19186 1.19531 0.92921 0.85886 1.40824 0.91174 1.44321 1.35986 1.02276 1.50619 1.20636 0.87642 0.97794 0.89248 1.21991 1.00990 0.95864 0.97985 1.21336 0.96446 0.96848 0.98851 1.21794 0.99135 0.93312 0.97753 0.90500 1.21299 0.84725 0.96939 0.95543 1.45804 1.24457 1.11725 1.54223 1.17466 0.83847 0.83375 0.77912 1.90703 1.61668 1.30752 1.62844 1.21183 0.99404 0.95577 1.10643 1.23163 0.95254 0.99417 1.04186 1.24670 1.02244 0.80644 1.01508 1.83730 1.37138 1.25745 1.60744 1.21892 0.84817 0.94942 0.93798 1.20777 1.05626 0.85487 1.01273 1.23183 0.94952 0.98744 1.01826 1.23157 1.01081 1.02818 0.92278 1.21091 0.96961 0.85851 0.93343 0.94197 0.93014 0.98995 0.92776 0.91187 0.90082 0.92650 0.90791 0.92459 0.75484 0.80965 0.73319 0.84847 0.87589 0.85942 0.86524 0.88442 0.97754 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.56 11.20 21.65 0.24 -55.32 16 2 C -0.05 -2.93 4.92 84.86 0.42 -2.51 16 3 Si 0.97 44.18 29.59 68.60 2.03 46.21 16 4 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.26 -14.08 9.58 84.03 0.81 -13.28 16 8 H 0.07 3.61 7.89 -2.91 -0.02 3.58 16 9 N -0.61 -30.07 2.99 -698.28 -2.09 -32.16 16 10 C 0.17 8.30 5.30 86.36 0.46 8.76 16 11 C -0.13 -4.70 6.08 30.67 0.19 -4.51 16 12 C -0.10 -2.98 5.16 30.62 0.16 -2.83 16 13 C -0.10 -3.14 2.39 -10.57 -0.03 -3.16 16 14 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 15 C 0.14 3.97 5.07 86.38 0.44 4.41 16 16 N -0.71 -19.72 5.33 -466.41 -2.49 -22.21 16 17 C 0.58 17.75 7.81 86.65 0.68 18.43 16 18 O -0.58 -20.39 14.92 -4.09 -0.06 -20.45 16 19 C -0.26 -6.91 6.31 -18.99 -0.12 -7.03 16 20 C -0.20 -4.04 10.60 23.65 0.25 -3.79 16 21 C -0.03 -0.41 12.03 66.89 0.80 0.39 16 22 O -0.18 -3.59 10.23 4.37 0.04 -3.54 16 23 C 0.10 2.38 6.85 25.26 0.17 2.55 16 24 C -0.11 -2.44 5.62 -11.54 -0.06 -2.50 16 25 C -0.15 -2.18 10.17 30.62 0.31 -1.87 16 26 C -0.16 -2.60 10.24 30.62 0.31 -2.29 16 27 C 0.15 6.15 5.63 86.51 0.49 6.64 16 28 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 29 H 0.05 2.83 6.06 -2.39 -0.01 2.81 16 30 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 31 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.41 10.23 6.89 -92.71 -0.64 9.59 16 38 H 0.17 2.86 7.74 -2.90 -0.02 2.83 16 39 H 0.25 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.13 3.34 6.66 -2.39 -0.02 3.32 16 41 H 0.11 1.43 7.96 -2.39 -0.02 1.41 16 42 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 46 H 0.05 2.11 7.16 -2.39 -0.02 2.09 16 Total: -1.00 -70.20 373.77 3.30 -66.91 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.34 Total: 23.14 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 5.27 Total: -2.59 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -4.33 Total: -109.68 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.02 Total: -23.99 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -70.20 3.30 -66.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281942557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.369 kcal (2) G-P(sol) polarization free energy of solvation -70.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds