Wall clock time and date at job start Tue Mar 31 2020 12:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38234 * 119.99713 * 2 1 4 4 C 1.38230 * 120.00139 * 180.02562 * 3 2 1 5 5 C 1.38236 * 119.99970 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00310 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47150 * 339.99797 * 6 5 4 8 8 C 1.52997 * 109.47247 * 99.99511 * 6 5 4 9 9 N 1.46498 * 109.47114 * 219.99478 * 6 5 4 10 10 C 1.34777 * 119.99828 * 154.72036 * 9 6 5 11 11 O 1.21353 * 120.00267 * 0.28147 * 10 9 6 12 12 C 1.49454 * 120.00301 * 180.27890 * 10 9 6 13 13 O 1.21353 * 119.99427 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00297 * 180.02562 * 12 10 9 15 15 C 1.46495 * 119.99663 * 180.02562 * 14 12 10 16 16 C 1.53004 * 109.46738 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.46988 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.46979 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00149 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99762 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00097 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99835 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47041 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46896 * 119.99624 * 22 20 18 25 25 H 1.48496 * 109.47151 * 239.99581 * 22 20 18 26 26 C 1.38242 * 119.99970 * 0.24776 * 5 4 3 27 27 C 1.38229 * 120.00220 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46830 * 89.99870 * 1 2 3 29 29 H 1.08997 * 109.46603 * 210.00066 * 1 2 3 30 30 H 1.08994 * 109.46895 * 329.99550 * 1 2 3 31 31 H 1.08004 * 119.99939 * 359.97438 * 3 2 1 32 32 H 1.08003 * 120.00268 * 179.97438 * 4 3 2 33 33 H 1.09009 * 109.47238 * 60.00212 * 8 6 5 34 34 H 1.08997 * 109.47293 * 180.02562 * 8 6 5 35 35 H 1.09003 * 109.47189 * 300.00333 * 8 6 5 36 36 H 0.97001 * 120.00384 * 335.00482 * 9 6 5 37 37 H 0.97000 * 119.99736 * 359.97438 * 14 12 10 38 38 H 1.09007 * 109.47376 * 299.99203 * 15 14 12 39 39 H 1.08997 * 109.47774 * 59.99894 * 15 14 12 40 40 H 1.09006 * 109.47053 * 299.99454 * 16 15 14 41 41 H 1.08997 * 109.47419 * 59.99839 * 16 15 14 42 42 H 1.09007 * 109.47300 * 299.99413 * 17 16 15 43 43 H 1.08997 * 109.47600 * 59.99950 * 17 16 15 44 44 H 0.97000 * 119.99613 * 180.02562 * 21 20 18 45 45 H 1.07994 * 119.99951 * 179.72918 * 26 5 4 46 46 H 1.08000 * 120.00180 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2718 0.0002 -0.0016 6 6 5.7788 0.0002 -0.0028 7 1 6.1418 0.9661 -0.3541 8 6 6.2899 -0.2508 1.4173 9 7 6.2664 -1.0575 -0.8913 10 6 7.4857 -0.9541 -1.4563 11 8 8.1816 0.0127 -1.2249 12 6 7.9807 -2.0301 -2.3678 13 8 7.2850 -2.9972 -2.5987 14 7 9.2002 -1.9269 -2.9323 15 6 9.6851 -2.9815 -3.8261 16 6 11.0851 -2.6212 -4.3274 17 6 11.5918 -3.7229 -5.2604 18 6 12.9710 -3.3683 -5.7536 19 1 13.4391 -2.4491 -5.4340 20 6 13.6348 -4.2172 -6.6139 21 7 13.0646 -5.3364 -7.0035 22 14 15.3441 -3.7774 -7.2258 23 1 15.7581 -2.4751 -6.6446 24 1 16.3043 -4.8320 -6.8124 25 1 15.3284 -3.6753 -8.7072 26 6 3.5806 -1.1971 -0.0073 27 6 2.1983 -1.1971 -0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6581 2.1325 -0.0004 32 1 4.1205 2.1326 -0.0010 33 1 5.9269 -1.2167 1.7687 34 1 7.3799 -0.2503 1.4165 35 1 5.9270 0.5362 2.0785 36 1 5.7102 -1.8304 -1.0764 37 1 9.7564 -1.1541 -2.7474 38 1 9.7247 -3.9268 -3.2849 39 1 9.0089 -3.0772 -4.6756 40 1 11.0451 -1.6760 -4.8688 41 1 11.7616 -2.5252 -3.4782 42 1 11.6320 -4.6679 -4.7187 43 1 10.9155 -3.8194 -6.1097 44 1 13.5318 -5.9337 -7.6084 45 1 4.1207 -2.1323 -0.0126 46 1 1.6583 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284177654.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:40 Heat of formation + Delta-G solvation = -71.068115 kcal Electronic energy + Delta-G solvation = -24984.262208 eV Core-core repulsion = 21258.834832 eV Total energy + Delta-G solvation = -3725.427376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.86802 -39.88056 -38.52491 -36.32921 -35.53423 -33.40439 -32.90816 -31.35921 -31.24702 -30.68715 -27.27099 -27.15202 -25.04113 -23.42548 -23.22551 -22.20791 -20.86419 -20.65724 -20.15582 -18.59684 -17.08905 -16.60258 -16.37200 -16.00310 -15.81672 -15.56535 -15.12636 -14.83876 -14.80629 -14.44301 -14.27643 -13.90734 -13.86329 -13.79037 -13.61009 -13.10900 -12.66873 -12.61950 -12.32162 -12.21094 -11.94910 -11.88764 -11.79696 -11.66275 -11.43194 -11.22843 -10.93274 -10.76538 -10.58276 -9.90923 -9.80506 -9.57650 -9.38848 -9.32695 -9.12435 -8.98580 -8.93179 -8.38583 -6.03152 -4.06059 0.84927 0.99591 1.41154 2.33355 3.21174 3.30025 3.31847 3.37648 3.41568 3.66506 4.12268 4.37863 4.43444 4.50211 4.50558 4.59087 4.77089 4.87908 4.98925 5.04276 5.16720 5.24159 5.31155 5.32976 5.37979 5.48593 5.59048 5.64721 5.66444 5.68867 5.82568 5.92410 5.98796 6.07734 6.18663 6.20905 6.26587 6.53780 6.57160 6.68963 6.90914 6.94888 7.39334 7.61620 7.71028 7.73001 7.95339 8.04447 8.36627 9.00698 9.58403 11.08136 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.031480 B = 0.001769 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.239037 B =15824.599177 C =16269.962103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.118 4.118 4 C -0.102 4.102 5 C -0.099 4.099 6 C 0.182 3.818 7 H 0.101 0.899 8 C -0.159 4.159 9 N -0.699 5.699 10 C 0.511 3.489 11 O -0.519 6.519 12 C 0.500 3.500 13 O -0.526 6.526 14 N -0.691 5.691 15 C 0.113 3.887 16 C -0.123 4.123 17 C 0.024 3.976 18 C -0.522 4.522 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.107 4.107 27 C -0.116 4.116 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.412 0.588 37 H 0.411 0.589 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.261 0.739 45 H 0.123 0.877 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.554 12.343 18.014 32.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.085 4.085 3 C -0.136 4.136 4 C -0.120 4.120 5 C -0.100 4.100 6 C 0.078 3.922 7 H 0.119 0.881 8 C -0.217 4.217 9 N -0.354 5.354 10 C 0.292 3.708 11 O -0.394 6.394 12 C 0.280 3.720 13 O -0.403 6.403 14 N -0.342 5.342 15 C -0.009 4.009 16 C -0.161 4.161 17 C -0.014 4.014 18 C -0.561 4.561 19 H 0.075 0.925 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.126 4.126 27 C -0.134 4.134 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.250 0.750 37 H 0.247 0.753 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.070 0.930 45 H 0.141 0.859 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -24.495 12.181 17.892 32.688 hybrid contribution 0.954 0.096 -0.432 1.052 sum -23.540 12.276 17.460 31.776 Atomic orbital electron populations 1.20815 0.91094 1.02852 1.02512 1.19990 0.96228 0.93221 0.99090 1.21028 0.93971 0.97689 1.00912 1.20980 0.94231 0.97345 0.99450 1.19854 0.94291 0.93926 1.01925 1.19886 0.89366 0.92316 0.90591 0.88145 1.22178 1.02234 1.02596 0.94708 1.45942 1.17417 1.24850 1.47184 1.20358 0.82331 0.86993 0.81141 1.90757 1.55707 1.31969 1.61015 1.19997 0.83201 0.86760 0.82085 1.90760 1.56087 1.32074 1.61408 1.46067 1.16353 1.25600 1.46225 1.21851 0.97208 0.89436 0.92358 1.21930 0.92027 1.01780 1.00337 1.19042 0.95989 0.92689 0.93677 1.21244 1.01107 1.06074 1.27639 0.92501 1.25030 0.98100 0.95026 0.96311 1.69974 1.37862 1.11185 1.34259 0.86516 0.84364 0.78442 0.78560 1.19724 1.20998 1.21006 1.20956 0.94381 0.97515 0.99712 1.21036 0.93960 0.97767 1.00596 0.91005 0.91440 0.91496 0.85834 0.85644 0.91976 0.91334 0.91095 0.75049 0.75291 0.91069 0.91088 0.92417 0.92414 0.96178 0.96180 0.92980 0.85874 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 10.01 36.01 0.36 -0.18 16 2 C -0.09 -0.58 5.88 -104.62 -0.62 -1.20 16 3 C -0.12 -0.81 9.70 -39.59 -0.38 -1.19 16 4 C -0.10 -0.75 9.67 -39.59 -0.38 -1.13 16 5 C -0.10 -0.80 4.96 -104.62 -0.52 -1.32 16 6 C 0.18 1.60 2.78 -69.08 -0.19 1.41 16 7 H 0.10 0.95 7.43 -51.93 -0.39 0.56 16 8 C -0.16 -1.25 9.47 37.16 0.35 -0.90 16 9 N -0.70 -7.30 5.02 -55.36 -0.28 -7.57 16 10 C 0.51 6.71 7.86 -11.58 -0.09 6.62 16 11 O -0.52 -7.62 16.14 5.49 0.09 -7.53 16 12 C 0.50 7.50 7.89 -11.58 -0.09 7.41 16 13 O -0.53 -8.95 16.48 5.49 0.09 -8.86 16 14 N -0.69 -10.38 5.55 -60.73 -0.34 -10.72 16 15 C 0.11 1.95 5.67 -4.04 -0.02 1.93 16 16 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 17 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 18 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 22 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 C -0.11 -0.83 9.06 -39.58 -0.36 -1.19 16 27 C -0.12 -0.83 9.70 -39.59 -0.38 -1.22 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 30 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 31 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 32 H 0.13 0.73 8.04 -52.48 -0.42 0.31 16 33 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.41 4.00 6.33 -40.82 -0.26 3.74 16 37 H 0.41 5.63 7.94 -40.82 -0.32 5.30 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.12 0.83 6.90 -52.49 -0.36 0.47 16 46 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 391.18 15.07 5.90 5.90 Total: -1.00 -32.28 391.18 -9.05 -41.33 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.21 Total: 3.29 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -3.02 Total: -6.38 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.12 Total: -44.22 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: 0.18 Total: -16.39 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.28 -9.05 -41.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284177654.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.735 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds