Wall clock time and date at job start Tue Mar 31 2020 12:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38234 * 119.99713 * 2 1 4 4 C 1.38230 * 120.00139 * 180.02562 * 3 2 1 5 5 C 1.38236 * 119.99970 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00310 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47150 * 339.99797 * 6 5 4 8 8 C 1.52997 * 109.47247 * 99.99511 * 6 5 4 9 9 N 1.46498 * 109.47114 * 219.99478 * 6 5 4 10 10 C 1.34777 * 119.99828 * 154.72036 * 9 6 5 11 11 O 1.21353 * 120.00267 * 0.28147 * 10 9 6 12 12 C 1.49454 * 120.00301 * 180.27890 * 10 9 6 13 13 O 1.21353 * 119.99427 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00297 * 180.02562 * 12 10 9 15 15 C 1.46495 * 119.99663 * 180.02562 * 14 12 10 16 16 C 1.53004 * 109.46738 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.46988 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.46979 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00149 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99762 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00097 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99835 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47041 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46896 * 119.99624 * 22 20 18 25 25 H 1.48496 * 109.47151 * 239.99581 * 22 20 18 26 26 C 1.38242 * 119.99970 * 0.24776 * 5 4 3 27 27 C 1.38229 * 120.00220 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46830 * 89.99870 * 1 2 3 29 29 H 1.08997 * 109.46603 * 210.00066 * 1 2 3 30 30 H 1.08994 * 109.46895 * 329.99550 * 1 2 3 31 31 H 1.08004 * 119.99939 * 359.97438 * 3 2 1 32 32 H 1.08003 * 120.00268 * 179.97438 * 4 3 2 33 33 H 1.09009 * 109.47238 * 60.00212 * 8 6 5 34 34 H 1.08997 * 109.47293 * 180.02562 * 8 6 5 35 35 H 1.09003 * 109.47189 * 300.00333 * 8 6 5 36 36 H 0.97001 * 120.00384 * 335.00482 * 9 6 5 37 37 H 0.97000 * 119.99736 * 359.97438 * 14 12 10 38 38 H 1.09007 * 109.47376 * 299.99203 * 15 14 12 39 39 H 1.08997 * 109.47774 * 59.99894 * 15 14 12 40 40 H 1.09006 * 109.47053 * 299.99454 * 16 15 14 41 41 H 1.08997 * 109.47419 * 59.99839 * 16 15 14 42 42 H 1.09007 * 109.47300 * 299.99413 * 17 16 15 43 43 H 1.08997 * 109.47600 * 59.99950 * 17 16 15 44 44 H 0.97000 * 119.99613 * 180.02562 * 21 20 18 45 45 H 1.07994 * 119.99951 * 179.72918 * 26 5 4 46 46 H 1.08000 * 120.00180 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2718 0.0002 -0.0016 6 6 5.7788 0.0002 -0.0028 7 1 6.1418 0.9661 -0.3541 8 6 6.2899 -0.2508 1.4173 9 7 6.2664 -1.0575 -0.8913 10 6 7.4857 -0.9541 -1.4563 11 8 8.1816 0.0127 -1.2249 12 6 7.9807 -2.0301 -2.3678 13 8 7.2850 -2.9972 -2.5987 14 7 9.2002 -1.9269 -2.9323 15 6 9.6851 -2.9815 -3.8261 16 6 11.0851 -2.6212 -4.3274 17 6 11.5918 -3.7229 -5.2604 18 6 12.9710 -3.3683 -5.7536 19 1 13.4391 -2.4491 -5.4340 20 6 13.6348 -4.2172 -6.6139 21 7 13.0646 -5.3364 -7.0035 22 14 15.3441 -3.7774 -7.2258 23 1 15.7581 -2.4751 -6.6446 24 1 16.3043 -4.8320 -6.8124 25 1 15.3284 -3.6753 -8.7072 26 6 3.5806 -1.1971 -0.0073 27 6 2.1983 -1.1971 -0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6581 2.1325 -0.0004 32 1 4.1205 2.1326 -0.0010 33 1 5.9269 -1.2167 1.7687 34 1 7.3799 -0.2503 1.4165 35 1 5.9270 0.5362 2.0785 36 1 5.7102 -1.8304 -1.0764 37 1 9.7564 -1.1541 -2.7474 38 1 9.7247 -3.9268 -3.2849 39 1 9.0089 -3.0772 -4.6756 40 1 11.0451 -1.6760 -4.8688 41 1 11.7616 -2.5252 -3.4782 42 1 11.6320 -4.6679 -4.7187 43 1 10.9155 -3.8194 -6.1097 44 1 13.5318 -5.9337 -7.6084 45 1 4.1207 -2.1323 -0.0126 46 1 1.6583 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284177654.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:38 Heat of formation + Delta-G solvation = -91.040504 kcal Electronic energy + Delta-G solvation = -24985.128276 eV Core-core repulsion = 21258.834832 eV Total energy + Delta-G solvation = -3726.293444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.89220 -40.61165 -39.59830 -37.34103 -36.83363 -35.24202 -33.63882 -33.04191 -31.87710 -31.36731 -28.97792 -27.67261 -26.40003 -24.65206 -23.94749 -23.16566 -22.37670 -21.48112 -21.21709 -19.73642 -18.53643 -18.02486 -17.41712 -17.16894 -16.82581 -16.45561 -16.14894 -16.10436 -16.04152 -15.57882 -15.11404 -14.99299 -14.67824 -14.39821 -14.31642 -14.28443 -13.87787 -13.77727 -13.51702 -13.26399 -13.03550 -12.86287 -12.78630 -12.72228 -12.55741 -12.50875 -12.37428 -11.95999 -11.79340 -11.70787 -11.56549 -11.22173 -10.74967 -10.55500 -10.46626 -10.30546 -9.86153 -9.47806 -8.19673 -6.30499 0.25195 0.31614 0.46533 1.26636 1.41791 1.42415 1.55399 2.07195 2.41449 2.56849 2.80939 3.14383 3.36507 3.50390 3.85984 4.06011 4.07625 4.08082 4.17634 4.19098 4.22455 4.51402 4.52065 4.53779 4.62686 4.80533 4.84355 4.85007 4.85994 4.91150 4.92444 5.08808 5.14610 5.17047 5.19975 5.22109 5.27192 5.45243 5.51693 5.59717 5.69283 5.70562 5.84399 5.86199 6.06992 6.22540 6.28980 6.65742 6.86538 6.87421 7.38959 8.92382 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.031480 B = 0.001769 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.239037 B =15824.599177 C =16269.962103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.125 4.125 4 C -0.109 4.109 5 C -0.110 4.110 6 C 0.184 3.816 7 H 0.095 0.905 8 C -0.154 4.154 9 N -0.686 5.686 10 C 0.517 3.483 11 O -0.536 6.536 12 C 0.501 3.499 13 O -0.548 6.548 14 N -0.685 5.685 15 C 0.127 3.873 16 C -0.106 4.106 17 C 0.024 3.976 18 C -0.542 4.542 19 H 0.064 0.936 20 C -0.002 4.002 21 N -0.933 5.933 22 Si 0.966 3.034 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.118 4.118 27 C -0.127 4.127 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.416 0.584 37 H 0.420 0.580 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.067 0.933 42 H -0.003 1.003 43 H -0.004 1.004 44 H 0.263 0.737 45 H 0.127 0.873 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.066 13.858 18.880 34.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.127 4.127 5 C -0.110 4.110 6 C 0.080 3.920 7 H 0.113 0.887 8 C -0.212 4.212 9 N -0.340 5.340 10 C 0.298 3.702 11 O -0.413 6.413 12 C 0.282 3.718 13 O -0.426 6.426 14 N -0.338 5.338 15 C 0.004 3.996 16 C -0.144 4.144 17 C -0.014 4.014 18 C -0.580 4.580 19 H 0.082 0.918 20 C -0.199 4.199 21 N -0.573 5.573 22 Si 0.790 3.210 23 H -0.185 1.185 24 H -0.205 1.205 25 H -0.206 1.206 26 C -0.136 4.136 27 C -0.145 4.145 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.254 0.746 37 H 0.257 0.743 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.015 0.985 43 H 0.015 0.985 44 H 0.072 0.928 45 H 0.145 0.855 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -25.031 13.718 18.786 34.171 hybrid contribution 1.006 -0.387 -0.675 1.271 sum -24.026 13.332 18.111 32.909 Atomic orbital electron populations 1.20855 0.89618 1.03728 1.02991 1.20318 0.97475 0.93130 0.98277 1.21306 0.93938 0.98565 1.00497 1.21197 0.94726 0.97609 0.99200 1.19805 0.93590 0.94482 1.03145 1.19983 0.90088 0.91316 0.90568 0.88669 1.22140 1.01249 1.03483 0.94362 1.45977 1.16341 1.25252 1.46384 1.19932 0.83035 0.86187 0.81091 1.90756 1.56361 1.32343 1.61792 1.20327 0.82739 0.86894 0.81889 1.90750 1.56615 1.33076 1.62171 1.45876 1.16703 1.25320 1.45852 1.21487 0.95849 0.89808 0.92470 1.21643 0.93258 0.99948 0.99530 1.18946 0.95039 0.93660 0.93738 1.21714 1.02271 1.06335 1.27684 0.91759 1.25981 1.02498 0.94879 0.96570 1.70105 1.39775 1.12368 1.35061 0.85386 0.79019 0.78600 0.77953 1.18453 1.20530 1.20557 1.21094 0.94875 0.97652 0.99976 1.21275 0.93926 0.98656 1.00612 0.90620 0.90768 0.90493 0.84061 0.84454 0.91532 0.92707 0.89532 0.74558 0.74285 0.91664 0.91751 0.91451 0.91411 0.98480 0.98513 0.92804 0.85474 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.01 71.24 0.71 -0.15 16 2 C -0.09 -1.12 5.88 -19.86 -0.12 -1.23 16 3 C -0.13 -1.50 9.70 22.27 0.22 -1.28 16 4 C -0.11 -1.45 9.67 22.27 0.22 -1.23 16 5 C -0.11 -1.65 4.96 -19.86 -0.10 -1.74 16 6 C 0.18 3.06 2.78 44.24 0.12 3.18 16 7 H 0.10 1.72 7.43 -2.39 -0.02 1.70 16 8 C -0.15 -2.27 9.47 71.98 0.68 -1.58 16 9 N -0.69 -13.79 5.02 -447.43 -2.25 -16.04 16 10 C 0.52 13.22 7.86 87.27 0.69 13.90 16 11 O -0.54 -15.26 16.14 -3.26 -0.05 -15.32 16 12 C 0.50 14.75 7.89 87.27 0.69 15.44 16 13 O -0.55 -18.48 16.48 -3.26 -0.05 -18.54 16 14 N -0.69 -20.10 5.55 -464.40 -2.58 -22.68 16 15 C 0.13 4.35 5.67 86.38 0.49 4.84 16 16 C -0.11 -4.08 5.27 30.60 0.16 -3.92 16 17 C 0.02 1.23 4.97 29.85 0.15 1.37 16 18 C -0.54 -30.26 9.11 25.60 0.23 -30.02 16 19 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 20 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 21 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 22 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 C -0.12 -1.71 9.06 22.27 0.20 -1.51 16 27 C -0.13 -1.67 9.70 22.27 0.22 -1.45 16 28 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.45 8.09 -2.39 -0.02 0.44 16 30 H 0.08 0.42 8.08 -2.39 -0.02 0.40 16 31 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 32 H 0.14 1.40 8.04 -2.91 -0.02 1.37 16 33 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.42 7.79 6.33 -92.71 -0.59 7.21 16 37 H 0.42 11.00 7.94 -92.71 -0.74 10.26 16 38 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 39 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 41 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 43 H 0.00 -0.20 8.14 -2.39 -0.02 -0.21 16 44 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 45 H 0.13 1.63 6.90 -2.91 -0.02 1.61 16 46 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -68.58 391.18 2.07 -66.51 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -0.34 Total: 21.35 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 5.02 Total: -5.02 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -4.54 Total: -94.94 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.11 Total: -33.85 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -68.58 2.07 -66.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284177654.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.529 kcal (2) G-P(sol) polarization free energy of solvation -68.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds