Wall clock time and date at job start Tue Mar 31 2020 12:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00050 * 2 1 4 4 H 1.48497 * 109.47222 * 240.00438 * 3 2 1 5 5 H 1.48508 * 109.47016 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46929 * 120.00324 * 3 2 1 7 7 C 1.37884 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.52989 * 109.47013 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47335 * 179.97438 * 10 9 7 12 12 O 1.21275 * 119.99917 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00276 * 179.97438 * 11 10 9 14 14 C 1.46490 * 120.00089 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47435 * 270.00340 * 14 13 11 16 16 C 1.38652 * 120.78903 * 269.72258 * 15 14 13 17 17 C 1.38208 * 119.16261 * 179.79628 * 16 15 14 18 18 N 1.31870 * 120.76029 * 0.48177 * 17 16 15 19 19 C 1.31868 * 121.72761 * 359.74557 * 18 17 16 20 20 C 1.38201 * 120.76583 * 0.02562 * 19 18 17 21 21 C 1.46503 * 119.99980 * 0.02562 * 13 11 10 22 22 C 1.53004 * 109.47044 * 89.99577 * 21 13 11 23 23 H 1.09002 * 110.27448 * 59.29962 * 22 21 13 24 24 C 1.54945 * 110.39100 * 181.44554 * 22 21 13 25 25 C 1.55304 * 100.94045 * 155.40253 * 24 22 21 26 26 C 1.54376 * 102.25567 * 325.86882 * 25 24 22 27 27 O 1.43240 * 107.58930 * 21.35352 * 26 25 24 28 28 H 0.96998 * 119.99826 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47389 * 60.00022 * 9 7 2 30 30 H 1.09005 * 109.46566 * 300.00061 * 9 7 2 31 31 H 1.09007 * 109.47366 * 59.99528 * 10 9 7 32 32 H 1.09005 * 109.47602 * 299.99815 * 10 9 7 33 33 H 1.08998 * 109.47293 * 29.99865 * 14 13 11 34 34 H 1.08998 * 109.47348 * 150.00282 * 14 13 11 35 35 H 1.07997 * 120.41897 * 359.97438 * 16 15 14 36 36 H 1.07993 * 119.62162 * 180.20480 * 17 16 15 37 37 H 1.08000 * 119.61781 * 179.97438 * 19 18 17 38 38 H 1.08005 * 120.42304 * 180.02562 * 20 19 18 39 39 H 1.09001 * 109.46751 * 330.00083 * 21 13 11 40 40 H 1.08993 * 109.47488 * 209.99735 * 21 13 11 41 41 H 1.08997 * 111.12470 * 273.31972 * 24 22 21 42 42 H 1.08995 * 111.12619 * 37.48960 * 24 22 21 43 43 H 1.08998 * 110.85543 * 207.67443 * 25 24 22 44 44 H 1.09009 * 111.02412 * 84.13543 * 25 24 22 45 45 H 1.08999 * 109.83271 * 261.84174 * 26 25 24 46 46 H 1.08999 * 109.91049 * 140.90833 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4918 -4.9672 0.0001 12 8 0.2790 -4.9672 0.0000 13 7 2.1657 -6.1344 -0.0003 14 6 1.4332 -7.4031 -0.0003 15 6 1.1824 -7.8383 1.4206 16 6 2.0931 -8.6436 2.0874 17 6 1.8314 -9.0194 3.3914 18 7 0.7270 -8.6288 3.9971 19 6 -0.1632 -7.8668 3.3924 20 6 0.0328 -7.4479 2.0901 21 6 3.6307 -6.1344 -0.0008 22 6 4.1412 -6.1345 1.4416 23 1 3.7751 -7.0137 1.9717 24 6 5.6900 -6.0979 1.4661 25 6 5.9479 -5.4687 2.8624 26 6 4.7582 -4.4957 3.0081 27 8 3.7269 -4.9365 2.1172 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5568 -0.8902 30 1 0.6247 -2.5570 0.8897 31 1 2.8720 -3.6043 0.8894 32 1 2.8719 -3.6044 -0.8905 33 1 0.4806 -7.2727 -0.5137 34 1 2.0221 -8.1626 -0.5143 35 1 2.9970 -8.9706 1.5951 36 1 2.5372 -9.6437 3.9189 37 1 -1.0563 -7.5672 3.9207 38 1 -0.6998 -6.8234 1.6003 39 1 3.9938 -5.2443 -0.5146 40 1 3.9939 -7.0242 -0.5148 41 1 6.1077 -7.1028 1.4048 42 1 6.0806 -5.4629 0.6710 43 1 6.8946 -4.9287 2.8758 44 1 5.9256 -6.2284 3.6438 45 1 5.0711 -3.4864 2.7410 46 1 4.3911 -4.5095 4.0343 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292253550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:10 Heat of formation + Delta-G solvation = -51.028934 kcal Electronic energy + Delta-G solvation = -27844.876820 eV Core-core repulsion = 24120.318408 eV Total energy + Delta-G solvation = -3724.558412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.49712 -39.60094 -38.74379 -35.63147 -33.50550 -32.97618 -32.21731 -31.22231 -30.77467 -30.24374 -27.30649 -25.75424 -24.87917 -23.43776 -22.39437 -21.79285 -21.44232 -21.01213 -18.46170 -17.27310 -16.90408 -16.58797 -16.29734 -16.18637 -15.66858 -15.60820 -15.38785 -14.76898 -14.39022 -14.34770 -13.80478 -13.65819 -13.47094 -13.37132 -13.06915 -12.76166 -12.44229 -12.14623 -12.09160 -11.98633 -11.83979 -11.52121 -11.29056 -11.25857 -11.04461 -10.92052 -10.84622 -10.55056 -9.85281 -9.74325 -9.60540 -9.56020 -9.31992 -9.09288 -9.06685 -8.85118 -8.44525 -8.23602 -5.89228 -3.92464 1.13166 1.22126 3.20523 3.34034 3.37326 3.41957 3.43649 3.81105 3.91213 4.35610 4.44985 4.51277 4.55006 4.64415 4.71136 4.76593 4.99805 5.01732 5.11119 5.13010 5.19100 5.23333 5.39386 5.45584 5.49848 5.52385 5.54111 5.62884 5.63778 5.75270 5.82975 5.85725 5.90997 5.98616 6.02985 6.35195 6.38533 6.62139 6.70615 6.73711 7.10103 7.13473 7.74873 7.82268 7.96594 7.98906 8.16413 8.48103 8.82050 9.15871 9.70010 11.21910 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.004259 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.979649 B = 6572.845068 C = 7618.772089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.040 3.960 10 C -0.135 4.135 11 C 0.524 3.476 12 O -0.534 6.534 13 N -0.617 5.617 14 C 0.150 3.850 15 C -0.053 4.053 16 C -0.166 4.166 17 C 0.089 3.911 18 N -0.488 5.488 19 C 0.096 3.904 20 C -0.143 4.143 21 C 0.113 3.887 22 C 0.055 3.945 23 H 0.074 0.926 24 C -0.150 4.150 25 C -0.153 4.153 26 C 0.048 3.952 27 O -0.359 6.359 28 H 0.260 0.740 29 H 0.018 0.982 30 H 0.021 0.979 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.129 0.871 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.142 0.858 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.833 -19.799 3.238 23.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C 0.003 3.997 10 C -0.174 4.174 11 C 0.316 3.684 12 O -0.409 6.409 13 N -0.352 5.352 14 C 0.027 3.973 15 C -0.062 4.062 16 C -0.186 4.186 17 C -0.068 4.068 18 N -0.197 5.197 19 C -0.060 4.060 20 C -0.163 4.163 21 C -0.011 4.011 22 C -0.003 4.003 23 H 0.092 0.908 24 C -0.188 4.188 25 C -0.191 4.191 26 C -0.029 4.029 27 O -0.279 6.279 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.039 0.961 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.172 0.828 38 H 0.160 0.840 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.638 -19.800 4.034 22.836 hybrid contribution 1.001 1.089 -0.653 1.617 sum 11.639 -18.711 3.381 22.294 Atomic orbital electron populations 1.69988 1.06013 1.26499 1.50489 1.25008 0.94780 0.99045 0.95505 0.86700 0.79586 0.83447 0.78458 1.20326 1.21332 1.20330 1.21173 0.92783 0.91044 1.50920 0.92841 1.18860 0.93179 0.89542 0.98159 1.22070 1.00890 0.91260 1.03165 1.21619 0.88252 0.85433 0.73110 1.90621 1.14494 1.87168 1.48577 1.48077 1.05847 1.05286 1.75957 1.20314 0.99246 0.86165 0.91545 1.20743 0.93652 0.94344 0.97498 1.21940 1.00056 1.00111 0.96512 1.22631 0.94426 0.97590 0.92118 1.67635 1.02761 1.11305 1.37989 1.22769 0.97697 0.93338 0.92205 1.22274 0.98516 0.99470 0.96059 1.21790 0.80457 1.03836 0.94975 1.23648 0.92979 0.89624 0.94079 0.90835 1.23268 0.95622 1.01979 0.97973 1.23085 0.99537 0.99247 0.97214 1.23127 0.87313 0.98177 0.94265 1.88580 1.40134 1.41506 1.57637 0.93021 0.96311 0.96062 0.87651 0.91194 0.88659 0.89906 0.85326 0.83264 0.82842 0.84028 0.88930 0.89602 0.90104 0.89872 0.90102 0.90894 0.90824 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.90 13.29 55.43 0.74 -27.17 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.04 1.12 4.26 -27.89 -0.12 1.00 16 10 C -0.13 -2.89 4.12 -27.89 -0.11 -3.01 16 11 C 0.52 10.42 7.35 -10.98 -0.08 10.34 16 12 O -0.53 -12.48 15.22 5.56 0.08 -12.40 16 13 N -0.62 -8.92 2.43 -175.06 -0.43 -9.34 16 14 C 0.15 1.83 5.63 -5.20 -0.03 1.81 16 15 C -0.05 -0.67 5.42 -104.32 -0.57 -1.23 16 16 C -0.17 -1.73 7.70 -39.44 -0.30 -2.04 16 17 C 0.09 1.00 11.18 -17.55 -0.20 0.81 16 18 N -0.49 -6.65 10.36 -13.25 -0.14 -6.79 16 19 C 0.10 1.31 11.18 -17.55 -0.20 1.11 16 20 C -0.14 -2.04 9.82 -39.44 -0.39 -2.43 16 21 C 0.11 1.24 5.15 -4.04 -0.02 1.22 16 22 C 0.06 0.61 3.70 -25.70 -0.10 0.52 16 23 H 0.07 0.81 5.37 -51.93 -0.28 0.53 16 24 C -0.15 -1.21 6.57 -24.48 -0.16 -1.38 16 25 C -0.15 -1.32 7.02 -24.79 -0.17 -1.50 16 26 C 0.05 0.58 7.79 37.88 0.30 0.88 16 27 O -0.36 -5.43 7.80 -35.23 -0.27 -5.70 16 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.02 0.56 8.10 -51.93 -0.42 0.14 16 30 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 31 H 0.11 2.23 5.20 -51.93 -0.27 1.96 16 32 H 0.07 1.38 7.40 -51.93 -0.38 1.00 16 33 H 0.10 1.30 7.38 -51.93 -0.38 0.92 16 34 H 0.08 0.71 7.85 -51.93 -0.41 0.31 16 35 H 0.13 0.96 7.78 -52.49 -0.41 0.55 16 36 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.14 2.20 7.72 -52.48 -0.40 1.80 16 39 H 0.09 1.07 6.44 -51.93 -0.33 0.74 16 40 H 0.09 0.63 7.89 -51.93 -0.41 0.22 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.65 8.06 -51.93 -0.42 0.24 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 371.58 15.07 5.60 5.60 Total: -1.00 -36.26 371.58 -9.04 -45.30 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.04 Total: 1.22 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -2.56 Total: -7.67 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.17 Total: -43.30 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.19 Total: -18.10 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.26 -9.04 -45.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292253550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.728 kcal (2) G-P(sol) polarization free energy of solvation -36.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds