Wall clock time and date at job start Tue Mar 31 2020 12:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00050 * 2 1 4 4 H 1.48497 * 109.47222 * 240.00438 * 3 2 1 5 5 H 1.48508 * 109.47016 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46929 * 120.00324 * 3 2 1 7 7 C 1.37884 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.52989 * 109.47013 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47335 * 179.97438 * 10 9 7 12 12 O 1.21275 * 119.99917 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00276 * 179.97438 * 11 10 9 14 14 C 1.46490 * 120.00089 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47435 * 270.00340 * 14 13 11 16 16 C 1.38652 * 120.78903 * 269.72258 * 15 14 13 17 17 C 1.38208 * 119.16261 * 179.79628 * 16 15 14 18 18 N 1.31870 * 120.76029 * 0.48177 * 17 16 15 19 19 C 1.31868 * 121.72761 * 359.74557 * 18 17 16 20 20 C 1.38201 * 120.76583 * 0.02562 * 19 18 17 21 21 C 1.46503 * 119.99980 * 0.02562 * 13 11 10 22 22 C 1.53004 * 109.47044 * 89.99577 * 21 13 11 23 23 H 1.09002 * 110.27448 * 59.29962 * 22 21 13 24 24 C 1.54945 * 110.39100 * 181.44554 * 22 21 13 25 25 C 1.55304 * 100.94045 * 155.40253 * 24 22 21 26 26 C 1.54376 * 102.25567 * 325.86882 * 25 24 22 27 27 O 1.43240 * 107.58930 * 21.35352 * 26 25 24 28 28 H 0.96998 * 119.99826 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47389 * 60.00022 * 9 7 2 30 30 H 1.09005 * 109.46566 * 300.00061 * 9 7 2 31 31 H 1.09007 * 109.47366 * 59.99528 * 10 9 7 32 32 H 1.09005 * 109.47602 * 299.99815 * 10 9 7 33 33 H 1.08998 * 109.47293 * 29.99865 * 14 13 11 34 34 H 1.08998 * 109.47348 * 150.00282 * 14 13 11 35 35 H 1.07997 * 120.41897 * 359.97438 * 16 15 14 36 36 H 1.07993 * 119.62162 * 180.20480 * 17 16 15 37 37 H 1.08000 * 119.61781 * 179.97438 * 19 18 17 38 38 H 1.08005 * 120.42304 * 180.02562 * 20 19 18 39 39 H 1.09001 * 109.46751 * 330.00083 * 21 13 11 40 40 H 1.08993 * 109.47488 * 209.99735 * 21 13 11 41 41 H 1.08997 * 111.12470 * 273.31972 * 24 22 21 42 42 H 1.08995 * 111.12619 * 37.48960 * 24 22 21 43 43 H 1.08998 * 110.85543 * 207.67443 * 25 24 22 44 44 H 1.09009 * 111.02412 * 84.13543 * 25 24 22 45 45 H 1.08999 * 109.83271 * 261.84174 * 26 25 24 46 46 H 1.08999 * 109.91049 * 140.90833 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4918 -4.9672 0.0001 12 8 0.2790 -4.9672 0.0000 13 7 2.1657 -6.1344 -0.0003 14 6 1.4332 -7.4031 -0.0003 15 6 1.1824 -7.8383 1.4206 16 6 2.0931 -8.6436 2.0874 17 6 1.8314 -9.0194 3.3914 18 7 0.7270 -8.6288 3.9971 19 6 -0.1632 -7.8668 3.3924 20 6 0.0328 -7.4479 2.0901 21 6 3.6307 -6.1344 -0.0008 22 6 4.1412 -6.1345 1.4416 23 1 3.7751 -7.0137 1.9717 24 6 5.6900 -6.0979 1.4661 25 6 5.9479 -5.4687 2.8624 26 6 4.7582 -4.4957 3.0081 27 8 3.7269 -4.9365 2.1172 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5568 -0.8902 30 1 0.6247 -2.5570 0.8897 31 1 2.8720 -3.6043 0.8894 32 1 2.8719 -3.6044 -0.8905 33 1 0.4806 -7.2727 -0.5137 34 1 2.0221 -8.1626 -0.5143 35 1 2.9970 -8.9706 1.5951 36 1 2.5372 -9.6437 3.9189 37 1 -1.0563 -7.5672 3.9207 38 1 -0.6998 -6.8234 1.6003 39 1 3.9938 -5.2443 -0.5146 40 1 3.9939 -7.0242 -0.5148 41 1 6.1077 -7.1028 1.4048 42 1 6.0806 -5.4629 0.6710 43 1 6.8946 -4.9287 2.8758 44 1 5.9256 -6.2284 3.6438 45 1 5.0711 -3.4864 2.7410 46 1 4.3911 -4.5095 4.0343 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292253550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:09 Heat of formation + Delta-G solvation = -75.092984 kcal Electronic energy + Delta-G solvation = -27845.920315 eV Core-core repulsion = 24120.318408 eV Total energy + Delta-G solvation = -3725.601907 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.57906 -40.62448 -39.94749 -36.91612 -35.57614 -34.16494 -33.08292 -32.71517 -32.15742 -31.17790 -28.70829 -27.17228 -26.23900 -24.38655 -23.87024 -22.68382 -22.51592 -22.22850 -19.85571 -18.87749 -17.95358 -17.89250 -17.38994 -17.38796 -16.94112 -16.64927 -16.49242 -16.40887 -16.03980 -15.44089 -14.89787 -14.67102 -14.64166 -14.52133 -14.26804 -14.10735 -13.72742 -13.63619 -13.36722 -13.20892 -12.96835 -12.77301 -12.56920 -12.49250 -12.39787 -12.18841 -12.04202 -11.76508 -11.64422 -11.51044 -11.31554 -10.90542 -10.61926 -10.56114 -10.48271 -10.30033 -10.02616 -9.60190 -8.17360 -6.31357 0.19063 0.23028 1.39392 1.44779 1.52432 1.75164 2.11431 2.42610 2.91969 2.98523 3.14987 3.55906 3.62339 3.69196 3.73162 3.85928 4.03090 4.05919 4.17210 4.19537 4.22536 4.31919 4.41040 4.46512 4.55265 4.59557 4.63436 4.70474 4.76411 4.80483 4.87981 4.91451 4.97156 5.03171 5.05798 5.13190 5.20662 5.36197 5.40117 5.48777 5.60902 5.68176 5.78932 5.86550 6.19812 6.25419 6.39264 6.85989 7.01165 7.32267 7.38538 8.95392 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.004259 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.979649 B = 6572.845068 C = 7618.772089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.973 3.027 4 H -0.260 1.260 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.050 3.950 10 C -0.121 4.121 11 C 0.521 3.479 12 O -0.585 6.585 13 N -0.602 5.602 14 C 0.149 3.851 15 C -0.061 4.061 16 C -0.148 4.148 17 C 0.086 3.914 18 N -0.508 5.508 19 C 0.081 3.919 20 C -0.170 4.170 21 C 0.102 3.898 22 C 0.048 3.952 23 H 0.079 0.921 24 C -0.138 4.138 25 C -0.144 4.144 26 C 0.038 3.962 27 O -0.403 6.403 28 H 0.262 0.738 29 H -0.022 1.022 30 H -0.028 1.028 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.137 0.863 35 H 0.175 0.825 36 H 0.186 0.814 37 H 0.158 0.842 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.140 0.860 41 H 0.116 0.884 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.060 0.940 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.656 -21.860 2.836 27.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.796 3.204 4 H -0.184 1.184 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.577 4.577 8 H 0.089 0.911 9 C 0.012 3.988 10 C -0.160 4.160 11 C 0.311 3.689 12 O -0.465 6.465 13 N -0.334 5.334 14 C 0.027 3.973 15 C -0.071 4.071 16 C -0.168 4.168 17 C -0.071 4.071 18 N -0.218 5.218 19 C -0.074 4.074 20 C -0.190 4.190 21 C -0.020 4.020 22 C -0.009 4.009 23 H 0.097 0.903 24 C -0.176 4.176 25 C -0.181 4.181 26 C -0.039 4.039 27 O -0.324 6.324 28 H 0.071 0.929 29 H -0.003 1.003 30 H -0.010 1.010 31 H 0.130 0.870 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.155 0.845 35 H 0.193 0.807 36 H 0.203 0.797 37 H 0.175 0.825 38 H 0.130 0.870 39 H 0.104 0.896 40 H 0.158 0.842 41 H 0.134 0.866 42 H 0.105 0.895 43 H 0.114 0.886 44 H 0.103 0.897 45 H 0.078 0.922 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.520 -21.910 3.632 27.095 hybrid contribution -0.501 1.647 -0.491 1.790 sum 15.019 -20.263 3.141 25.418 Atomic orbital electron populations 1.70182 1.08344 1.27784 1.51535 1.26138 0.95707 1.03877 0.94607 0.85394 0.78124 0.77344 0.79506 1.18396 1.21173 1.18857 1.21617 0.93714 0.91611 1.50730 0.91052 1.18616 0.93524 0.92775 0.93862 1.21773 0.99376 0.90358 1.04483 1.21250 0.87476 0.86781 0.73358 1.90608 1.16537 1.88069 1.51270 1.47913 1.07597 1.04306 1.73549 1.20549 0.99087 0.85903 0.91761 1.20853 0.93556 0.94980 0.97686 1.22320 1.00457 0.98016 0.95964 1.23327 0.93917 0.97040 0.92771 1.67670 1.03784 1.11705 1.38659 1.22835 0.98447 0.94027 0.92122 1.22206 0.99520 1.00497 0.96827 1.22257 0.77631 1.06222 0.95850 1.23855 0.95356 0.88373 0.93356 0.90305 1.23269 0.92919 1.04014 0.97369 1.23061 0.98198 0.98654 0.98228 1.23222 0.88539 0.98814 0.93288 1.88530 1.41993 1.43364 1.58500 0.92905 1.00325 1.00979 0.86966 0.89078 0.91114 0.84523 0.80746 0.79690 0.82521 0.87035 0.89579 0.84236 0.86570 0.89496 0.88648 0.89715 0.92150 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.48 13.29 21.45 0.28 -61.20 16 2 C -0.01 -0.37 5.46 84.66 0.46 0.10 16 3 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.54 -32.15 9.11 25.60 0.23 -31.92 16 8 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 9 C 0.05 2.96 4.26 29.84 0.13 3.09 16 10 C -0.12 -5.38 4.12 29.85 0.12 -5.26 16 11 C 0.52 21.56 7.35 87.66 0.64 22.20 16 12 O -0.59 -29.75 15.22 -3.01 -0.05 -29.79 16 13 N -0.60 -16.60 2.43 -826.17 -2.01 -18.61 16 14 C 0.15 3.37 5.63 85.64 0.48 3.85 16 15 C -0.06 -1.48 5.42 -19.67 -0.11 -1.58 16 16 C -0.15 -2.51 7.70 22.36 0.17 -2.33 16 17 C 0.09 1.67 11.18 84.68 0.95 2.62 16 18 N -0.51 -13.51 10.36 -195.85 -2.03 -15.54 16 19 C 0.08 2.32 11.18 84.68 0.95 3.27 16 20 C -0.17 -5.17 9.82 22.36 0.22 -4.95 16 21 C 0.10 1.85 5.15 86.38 0.44 2.30 16 22 C 0.05 0.89 3.70 31.26 0.12 1.01 16 23 H 0.08 1.36 5.37 -2.39 -0.01 1.35 16 24 C -0.14 -1.53 6.57 32.05 0.21 -1.32 16 25 C -0.14 -1.98 7.02 31.85 0.22 -1.75 16 26 C 0.04 0.89 7.79 72.45 0.56 1.46 16 27 O -0.40 -11.88 7.80 -148.98 -1.16 -13.04 16 28 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 29 H -0.02 -1.44 8.10 -2.39 -0.02 -1.46 16 30 H -0.03 -1.92 8.10 -2.38 -0.02 -1.94 16 31 H 0.11 4.88 5.20 -2.38 -0.01 4.86 16 32 H 0.09 3.61 7.40 -2.38 -0.02 3.59 16 33 H 0.07 1.98 7.38 -2.39 -0.02 1.97 16 34 H 0.14 1.64 7.85 -2.39 -0.02 1.62 16 35 H 0.18 1.35 7.78 -2.91 -0.02 1.33 16 36 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.16 4.05 8.06 -2.91 -0.02 4.03 16 38 H 0.11 3.99 7.72 -2.91 -0.02 3.97 16 39 H 0.09 1.72 6.44 -2.39 -0.02 1.71 16 40 H 0.14 1.10 7.89 -2.39 -0.02 1.08 16 41 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.09 0.94 8.06 -2.39 -0.02 0.92 16 43 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -88.17 371.58 3.84 -84.33 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.97 Total: 15.51 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 5.81 Total: -9.22 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -3.75 Total: -95.35 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -1.21 Total: -42.84 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -88.17 3.84 -84.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292253550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.241 kcal (2) G-P(sol) polarization free energy of solvation -88.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds