Wall clock time and date at job start Tue Mar 31 2020 12:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99551 * 2 1 4 4 H 1.48501 * 109.47483 * 269.99824 * 3 2 1 5 5 H 1.48502 * 109.47495 * 30.00338 * 3 2 1 6 6 H 1.48502 * 109.47376 * 149.99955 * 3 2 1 7 7 C 1.37871 * 120.00506 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 180.02562 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 C 1.38833 * 120.75427 * 269.71762 * 15 14 13 17 17 C 1.38045 * 119.28577 * 179.73249 * 16 15 14 18 18 N 1.31962 * 120.83538 * 0.55719 * 17 16 15 19 19 C 1.32242 * 121.65050 * 359.71705 * 18 17 16 20 20 O 1.35676 * 119.68970 * 180.02562 * 19 18 17 21 21 C 1.42901 * 116.99894 * 359.97438 * 20 19 18 22 22 C 1.54260 * 110.03297 * 267.16806 * 21 20 19 23 23 C 1.54881 * 104.19782 * 217.10231 * 22 21 20 24 24 C 1.54887 * 102.74977 * 37.94309 * 23 22 21 25 25 C 1.53869 * 110.03256 * 149.99824 * 21 20 19 26 26 C 1.38369 * 120.75991 * 90.00339 * 15 14 13 27 27 H 0.97000 * 120.00920 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 29 29 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 30 30 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 31 31 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 32 32 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 33 33 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 34 34 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 35 35 H 1.07997 * 120.35706 * 359.97438 * 16 15 14 36 36 H 1.08008 * 119.58265 * 180.27134 * 17 16 15 37 37 H 1.08996 * 110.01591 * 28.60756 * 21 20 19 38 38 H 1.08997 * 110.49138 * 335.78536 * 22 21 20 39 39 H 1.09009 * 110.48892 * 98.42650 * 22 21 20 40 40 H 1.09001 * 110.75891 * 279.63131 * 23 22 21 41 41 H 1.09004 * 110.92203 * 156.33221 * 23 22 21 42 42 H 1.09003 * 110.49235 * 203.37736 * 24 23 22 43 43 H 1.09007 * 110.48559 * 80.73394 * 24 23 22 44 44 H 1.08998 * 110.03410 * 238.57156 * 25 21 20 45 45 H 1.08997 * 110.03445 * 0.02562 * 25 21 20 46 46 H 1.08006 * 120.44721 * 359.97191 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6363 -0.0014 11 6 5.5287 -2.6363 -0.0001 12 8 6.1350 -1.5859 0.0012 13 7 6.2026 -3.8034 -0.0016 14 6 7.6676 -3.8033 0.0057 15 6 8.1699 -5.2241 0.0092 16 6 8.4061 -5.8907 1.2040 17 6 8.8609 -7.1937 1.1718 18 7 9.0824 -7.8046 0.0233 19 6 8.8745 -7.2014 -1.1350 20 8 9.1150 -7.8674 -2.2923 21 6 9.5895 -9.2108 -2.1811 22 6 11.1318 -9.2301 -2.2056 23 6 11.4830 -10.5077 -3.0075 24 6 10.3939 -10.5303 -4.1086 25 6 9.1203 -10.0374 -3.3911 26 6 8.4118 -5.8921 -1.1782 27 1 -0.4851 0.8400 0.0004 28 1 3.8745 -0.6806 0.8905 29 1 3.8752 -0.6794 -0.8895 30 1 3.6587 -3.1492 -0.8920 31 1 3.6580 -3.1512 0.8879 32 1 5.7176 -4.6435 -0.0031 33 1 8.0353 -3.2901 -0.8828 34 1 8.0265 -3.2889 0.8971 35 1 8.2323 -5.3964 2.1483 36 1 9.0420 -7.7182 2.0984 37 1 9.2244 -9.6602 -1.2577 38 1 11.5165 -8.3445 -2.7112 39 1 11.5287 -9.2946 -1.1923 40 1 11.4114 -11.3927 -2.3752 41 1 12.4767 -10.4295 -3.4487 42 1 10.2522 -11.5436 -4.4844 43 1 10.6594 -9.8546 -4.9217 44 1 8.5281 -10.8885 -3.0548 45 1 8.5310 -9.4139 -4.0634 46 1 8.2428 -5.4025 -2.1259 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292696418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:15 Heat of formation + Delta-G solvation = -60.971028 kcal Electronic energy + Delta-G solvation = -25192.514161 eV Core-core repulsion = 21467.524628 eV Total energy + Delta-G solvation = -3724.989533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.10430 -39.50965 -38.95146 -36.72719 -35.25514 -33.48543 -32.54238 -31.24213 -30.89879 -29.19145 -28.34202 -27.45997 -25.49500 -23.75485 -22.65410 -21.26532 -21.17584 -20.49860 -19.77995 -18.53946 -17.33314 -17.15796 -16.39156 -16.04457 -15.99657 -15.74547 -15.62759 -15.34201 -15.07173 -14.61565 -14.09819 -13.82414 -13.80275 -13.38198 -13.24173 -13.08921 -12.79169 -12.55484 -12.36918 -12.33550 -11.97135 -11.61490 -11.53901 -11.42574 -11.26160 -11.09772 -10.96218 -10.92891 -10.26680 -10.17331 -10.05201 -9.92189 -9.78197 -9.24618 -9.16836 -8.98573 -8.80382 -8.50727 -6.02901 -4.01800 0.76169 0.88425 2.67463 3.07263 3.26339 3.38058 3.44633 3.55326 3.67837 3.92553 4.10566 4.13689 4.26381 4.45561 4.50947 4.62104 4.77605 4.82044 4.94672 4.99951 5.02281 5.16900 5.18053 5.22742 5.31267 5.32520 5.41488 5.43541 5.45479 5.55474 5.58794 5.65061 5.69443 5.74330 5.85090 6.01607 6.06750 6.08843 6.14029 6.49079 6.68086 6.98670 7.35731 7.42879 7.51486 7.69090 7.78912 8.48974 8.60189 9.00033 9.60018 11.09871 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025357 B = 0.001945 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.949533 B =14392.336839 C =14857.528534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.121 4.121 11 C 0.512 3.488 12 O -0.539 6.539 13 N -0.738 5.738 14 C 0.159 3.841 15 C -0.023 4.023 16 C -0.195 4.195 17 C 0.139 3.861 18 N -0.538 5.538 19 C 0.323 3.677 20 O -0.299 6.299 21 C 0.085 3.915 22 C -0.140 4.140 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.126 4.126 26 C -0.174 4.174 27 H 0.263 0.737 28 H 0.024 0.976 29 H 0.019 0.981 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.401 0.599 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.140 0.860 36 H 0.161 0.839 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.106 -23.548 -2.690 33.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.161 4.161 11 C 0.300 3.700 12 O -0.414 6.414 13 N -0.393 5.393 14 C 0.035 3.965 15 C -0.031 4.031 16 C -0.215 4.215 17 C -0.016 4.016 18 N -0.262 5.262 19 C 0.144 3.856 20 O -0.206 6.206 21 C 0.029 3.971 22 C -0.178 4.178 23 C -0.161 4.161 24 C -0.161 4.161 25 C -0.164 4.164 26 C -0.196 4.196 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.235 0.765 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.158 0.842 36 H 0.178 0.822 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 24.663 -23.416 -2.986 34.139 hybrid contribution -0.084 1.113 0.152 1.127 sum 24.579 -22.302 -2.834 33.310 Atomic orbital electron populations 1.69907 1.06293 1.26977 1.51038 1.24972 0.94713 0.99240 0.94332 0.86794 0.80607 0.83384 0.78749 1.20241 1.21446 1.18533 1.21112 0.89271 0.94577 1.51371 0.90926 1.19376 0.96430 0.90165 0.97695 1.21675 0.87665 1.03343 1.03453 1.21591 0.91607 0.82561 0.74192 1.90663 1.70758 1.31381 1.48645 1.46177 1.05484 1.09594 1.77995 1.20131 0.81846 0.90827 1.03693 1.20160 0.94774 0.95756 0.92367 1.21977 1.04153 0.96463 0.98940 1.22405 0.92730 0.91764 0.94747 1.67248 1.21673 1.38986 0.98335 1.19765 0.91378 0.89272 0.85193 1.86347 1.79721 1.28295 1.26257 1.23092 0.93961 0.79800 1.00268 1.22803 0.94839 0.98988 1.01140 1.22443 0.98920 0.97522 0.97225 1.22353 0.94419 1.01365 0.97957 1.22286 0.98494 0.99013 0.96565 1.21028 1.05467 0.93099 0.99970 0.92714 0.95789 0.96249 0.89523 0.89508 0.76536 0.90289 0.90138 0.84180 0.82189 0.88884 0.90717 0.90892 0.91185 0.91127 0.91183 0.91214 0.90474 0.90162 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.01 13.96 55.43 0.77 -27.23 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.58 27.47 -169.99 -4.67 17.92 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.68 6.54 56.52 0.37 -6.31 16 7 C -0.53 -15.02 9.66 -34.44 -0.33 -15.36 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C 0.00 0.03 3.33 -27.89 -0.09 -0.06 16 10 C -0.12 -2.32 5.64 -27.89 -0.16 -2.48 16 11 C 0.51 9.06 7.83 -10.98 -0.09 8.98 16 12 O -0.54 -11.67 15.98 5.55 0.09 -11.59 16 13 N -0.74 -9.50 5.55 -61.47 -0.34 -9.84 16 14 C 0.16 1.78 5.85 -5.19 -0.03 1.75 16 15 C -0.02 -0.22 5.28 -104.35 -0.55 -0.77 16 16 C -0.19 -1.62 9.81 -39.43 -0.39 -2.01 16 17 C 0.14 1.14 11.18 -17.57 -0.20 0.94 16 18 N -0.54 -5.42 8.64 -13.33 -0.12 -5.53 16 19 C 0.32 3.45 7.48 -17.12 -0.13 3.32 16 20 O -0.30 -3.14 9.67 -18.73 -0.18 -3.32 16 21 C 0.09 0.71 3.17 -25.62 -0.08 0.63 16 22 C -0.14 -1.03 6.56 -25.08 -0.16 -1.19 16 23 C -0.12 -0.69 6.91 -24.74 -0.17 -0.86 16 24 C -0.12 -0.69 6.83 -25.07 -0.17 -0.86 16 25 C -0.13 -0.85 6.61 -25.61 -0.17 -1.02 16 26 C -0.17 -1.77 9.75 -39.28 -0.38 -2.15 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 29 H 0.02 0.49 7.53 -51.92 -0.39 0.10 16 30 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.40 4.26 8.46 -40.82 -0.35 3.91 16 33 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 34 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 35 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 37 H 0.09 0.83 6.97 -51.93 -0.36 0.47 16 38 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 39 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.59 7.95 -51.93 -0.41 0.18 16 46 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 381.33 15.07 5.75 5.75 Total: -1.00 -34.42 381.33 -9.28 -43.70 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.38 Total: -0.66 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -3.20 Total: -9.19 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.32 Total: -42.60 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.09 Total: -14.91 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.67 Total: 17.92 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.42 -9.28 -43.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292696418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.275 kcal (2) G-P(sol) polarization free energy of solvation -34.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds