Wall clock time and date at job start Tue Mar 31 2020 12:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99551 * 2 1 4 4 H 1.48501 * 109.47483 * 269.99824 * 3 2 1 5 5 H 1.48502 * 109.47495 * 30.00338 * 3 2 1 6 6 H 1.48502 * 109.47376 * 149.99955 * 3 2 1 7 7 C 1.37871 * 120.00506 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 180.02562 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 C 1.38833 * 120.75427 * 269.71762 * 15 14 13 17 17 C 1.38045 * 119.28577 * 179.73249 * 16 15 14 18 18 N 1.31962 * 120.83538 * 0.55719 * 17 16 15 19 19 C 1.32242 * 121.65050 * 359.71705 * 18 17 16 20 20 O 1.35676 * 119.68970 * 180.02562 * 19 18 17 21 21 C 1.42901 * 116.99894 * 359.97438 * 20 19 18 22 22 C 1.54260 * 110.03297 * 267.16806 * 21 20 19 23 23 C 1.54881 * 104.19782 * 217.10231 * 22 21 20 24 24 C 1.54887 * 102.74977 * 37.94309 * 23 22 21 25 25 C 1.53869 * 110.03256 * 149.99824 * 21 20 19 26 26 C 1.38369 * 120.75991 * 90.00339 * 15 14 13 27 27 H 0.97000 * 120.00920 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 29 29 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 30 30 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 31 31 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 32 32 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 33 33 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 34 34 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 35 35 H 1.07997 * 120.35706 * 359.97438 * 16 15 14 36 36 H 1.08008 * 119.58265 * 180.27134 * 17 16 15 37 37 H 1.08996 * 110.01591 * 28.60756 * 21 20 19 38 38 H 1.08997 * 110.49138 * 335.78536 * 22 21 20 39 39 H 1.09009 * 110.48892 * 98.42650 * 22 21 20 40 40 H 1.09001 * 110.75891 * 279.63131 * 23 22 21 41 41 H 1.09004 * 110.92203 * 156.33221 * 23 22 21 42 42 H 1.09003 * 110.49235 * 203.37736 * 24 23 22 43 43 H 1.09007 * 110.48559 * 80.73394 * 24 23 22 44 44 H 1.08998 * 110.03410 * 238.57156 * 25 21 20 45 45 H 1.08997 * 110.03445 * 0.02562 * 25 21 20 46 46 H 1.08006 * 120.44721 * 359.97191 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6363 -0.0014 11 6 5.5287 -2.6363 -0.0001 12 8 6.1350 -1.5859 0.0012 13 7 6.2026 -3.8034 -0.0016 14 6 7.6676 -3.8033 0.0057 15 6 8.1699 -5.2241 0.0092 16 6 8.4061 -5.8907 1.2040 17 6 8.8609 -7.1937 1.1718 18 7 9.0824 -7.8046 0.0233 19 6 8.8745 -7.2014 -1.1350 20 8 9.1150 -7.8674 -2.2923 21 6 9.5895 -9.2108 -2.1811 22 6 11.1318 -9.2301 -2.2056 23 6 11.4830 -10.5077 -3.0075 24 6 10.3939 -10.5303 -4.1086 25 6 9.1203 -10.0374 -3.3911 26 6 8.4118 -5.8921 -1.1782 27 1 -0.4851 0.8400 0.0004 28 1 3.8745 -0.6806 0.8905 29 1 3.8752 -0.6794 -0.8895 30 1 3.6587 -3.1492 -0.8920 31 1 3.6580 -3.1512 0.8879 32 1 5.7176 -4.6435 -0.0031 33 1 8.0353 -3.2901 -0.8828 34 1 8.0265 -3.2889 0.8971 35 1 8.2323 -5.3964 2.1483 36 1 9.0420 -7.7182 2.0984 37 1 9.2244 -9.6602 -1.2577 38 1 11.5165 -8.3445 -2.7112 39 1 11.5287 -9.2946 -1.1923 40 1 11.4114 -11.3927 -2.3752 41 1 12.4767 -10.4295 -3.4487 42 1 10.2522 -11.5436 -4.4844 43 1 10.6594 -9.8546 -4.9217 44 1 8.5281 -10.8885 -3.0548 45 1 8.5310 -9.4139 -4.0634 46 1 8.2428 -5.4025 -2.1259 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292696418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:14 Heat of formation + Delta-G solvation = -83.965709 kcal Electronic energy + Delta-G solvation = -25193.511286 eV Core-core repulsion = 21467.524628 eV Total energy + Delta-G solvation = -3725.986657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.83348 -40.71914 -39.77214 -37.36584 -36.32023 -35.51377 -33.67349 -33.07347 -31.59038 -29.71643 -29.13285 -28.62724 -27.00443 -24.46533 -23.61796 -22.87047 -21.67932 -21.32715 -21.04767 -19.44612 -19.05735 -18.00428 -17.57976 -17.21385 -16.82071 -16.63165 -16.46990 -16.28754 -16.20230 -15.95513 -15.31729 -14.87549 -14.69320 -14.57507 -14.42174 -14.33171 -13.83894 -13.68192 -13.54436 -13.37980 -12.96063 -12.89015 -12.74427 -12.10714 -12.09768 -12.01590 -11.96010 -11.86051 -11.75909 -11.63049 -11.46682 -11.39478 -11.17226 -10.77473 -10.63999 -10.58606 -10.15632 -9.50776 -8.30668 -6.33707 0.01636 0.17232 1.34330 1.36202 1.51079 1.66899 1.98815 2.25663 2.35794 2.80620 3.05067 3.25909 3.48196 3.58191 3.60834 3.84984 3.97202 4.01907 4.09210 4.11560 4.36078 4.40169 4.45508 4.48382 4.49183 4.54963 4.61139 4.64799 4.71383 4.73941 4.85916 4.89623 4.98633 5.01113 5.08120 5.16718 5.21576 5.28683 5.30026 5.39772 5.41431 5.46015 5.48951 5.61993 6.24076 6.28926 6.52157 6.72898 6.81284 7.26188 7.31719 8.84935 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025357 B = 0.001945 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.949533 B =14392.336839 C =14857.528534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.530 4.530 8 H 0.050 0.950 9 C 0.004 3.996 10 C -0.117 4.117 11 C 0.519 3.481 12 O -0.582 6.582 13 N -0.715 5.715 14 C 0.162 3.838 15 C -0.023 4.023 16 C -0.188 4.188 17 C 0.139 3.861 18 N -0.548 5.548 19 C 0.307 3.693 20 O -0.314 6.314 21 C 0.080 3.920 22 C -0.138 4.138 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.184 4.184 27 H 0.267 0.733 28 H 0.012 0.988 29 H 0.009 0.991 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.414 0.586 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.161 0.839 36 H 0.192 0.808 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.769 -24.779 -2.154 35.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.568 4.568 8 H 0.068 0.932 9 C -0.034 4.034 10 C -0.157 4.157 11 C 0.307 3.693 12 O -0.462 6.462 13 N -0.369 5.369 14 C 0.039 3.961 15 C -0.031 4.031 16 C -0.208 4.208 17 C -0.017 4.017 18 N -0.272 5.272 19 C 0.129 3.871 20 O -0.221 6.221 21 C 0.024 3.976 22 C -0.176 4.176 23 C -0.156 4.156 24 C -0.158 4.158 25 C -0.163 4.163 26 C -0.205 4.205 27 H 0.076 0.924 28 H 0.030 0.970 29 H 0.027 0.973 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.251 0.749 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.178 0.822 36 H 0.209 0.791 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.089 0.911 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 26.339 -24.709 -2.457 36.198 hybrid contribution -0.605 1.371 0.016 1.498 sum 25.734 -23.339 -2.441 34.827 Atomic orbital electron populations 1.70022 1.07806 1.28088 1.52527 1.25817 0.95506 1.02911 0.94290 0.85818 0.79284 0.79427 0.79116 1.19452 1.20413 1.18386 1.21443 0.91327 0.93695 1.50297 0.93211 1.19234 0.93865 0.93792 0.96497 1.21500 0.89140 0.99930 1.05109 1.21154 0.90921 0.83106 0.74102 1.90652 1.71271 1.33122 1.51144 1.45893 1.06463 1.08748 1.75779 1.20161 0.80278 0.92004 1.03693 1.19976 0.95483 0.94824 0.92829 1.22213 1.03018 0.96447 0.99158 1.22959 0.91608 0.91896 0.95211 1.67305 1.21808 1.39395 0.98682 1.19909 0.92075 0.89585 0.85522 1.86327 1.79971 1.29219 1.26625 1.23258 0.94581 0.79104 1.00645 1.22771 0.94133 0.99545 1.01149 1.22447 0.99342 0.96793 0.97044 1.22361 0.93659 1.02094 0.97734 1.22323 0.99161 0.98939 0.95914 1.21078 1.05943 0.93195 1.00282 0.92404 0.96952 0.97267 0.88049 0.87801 0.74901 0.90803 0.89723 0.82182 0.79134 0.89567 0.91835 0.91227 0.90272 0.90241 0.89666 0.91510 0.89450 0.91085 0.83998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.14 13.96 21.44 0.30 -58.84 16 2 C 0.01 0.73 5.47 84.65 0.46 1.20 16 3 Si 0.94 46.67 27.47 68.60 1.88 48.56 16 4 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.26 -12.76 6.54 99.48 0.65 -12.11 16 7 C -0.53 -30.49 9.66 25.60 0.25 -30.24 16 8 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 9 C 0.00 0.20 3.33 29.85 0.10 0.30 16 10 C -0.12 -4.32 5.64 29.85 0.17 -4.15 16 11 C 0.52 17.63 7.83 87.66 0.69 18.32 16 12 O -0.58 -24.78 15.98 -3.04 -0.05 -24.83 16 13 N -0.72 -16.99 5.55 -466.79 -2.59 -19.58 16 14 C 0.16 3.36 5.85 85.63 0.50 3.86 16 15 C -0.02 -0.40 5.28 -19.69 -0.10 -0.51 16 16 C -0.19 -2.63 9.81 22.37 0.22 -2.41 16 17 C 0.14 1.93 11.18 84.63 0.95 2.87 16 18 N -0.55 -10.28 8.64 -308.95 -2.67 -12.94 16 19 C 0.31 6.38 7.48 84.80 0.63 7.02 16 20 O -0.31 -6.60 9.67 -89.94 -0.87 -7.47 16 21 C 0.08 1.31 3.17 31.31 0.10 1.41 16 22 C -0.14 -1.96 6.56 31.66 0.21 -1.75 16 23 C -0.12 -1.15 6.91 31.88 0.22 -0.93 16 24 C -0.12 -1.18 6.83 31.67 0.22 -0.97 16 25 C -0.13 -1.61 6.61 31.32 0.21 -1.41 16 26 C -0.18 -3.58 9.75 22.47 0.22 -3.36 16 27 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 28 H 0.01 0.62 7.16 -2.39 -0.02 0.61 16 29 H 0.01 0.46 7.53 -2.38 -0.02 0.44 16 30 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 31 H 0.10 3.46 8.14 -2.39 -0.02 3.45 16 32 H 0.41 7.76 8.46 -92.71 -0.78 6.98 16 33 H 0.07 1.66 8.10 -2.38 -0.02 1.64 16 34 H 0.08 1.76 8.10 -2.39 -0.02 1.74 16 35 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 37 H 0.09 1.50 6.97 -2.39 -0.02 1.48 16 38 H 0.06 1.03 8.08 -2.39 -0.02 1.01 16 39 H 0.07 1.00 8.14 -2.38 -0.02 0.99 16 40 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 42 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.07 0.69 8.14 -2.38 -0.02 0.68 16 44 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.07 1.04 7.95 -2.39 -0.02 1.02 16 46 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -74.39 381.33 1.17 -73.23 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.13 Total: 12.62 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: 5.03 Total: -10.75 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -4.96 Total: -91.36 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.92 Total: -32.29 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.88 Total: 48.56 kcal Total: -74.39 1.17 -73.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292696418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.740 kcal (2) G-P(sol) polarization free energy of solvation -74.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds