Wall clock time and date at job start Tue Mar 31 2020 12:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00181 * 2 1 4 4 H 1.48506 * 109.47096 * 270.00099 * 3 2 1 5 5 H 1.48504 * 109.46989 * 29.99678 * 3 2 1 6 6 H 1.48497 * 109.47124 * 150.00057 * 3 2 1 7 7 C 1.37879 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00435 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99554 * 0.02562 * 7 2 1 10 10 H 1.09006 * 110.66999 * 61.78290 * 9 7 2 11 11 C 1.54888 * 110.75895 * 298.54516 * 9 7 2 12 12 C 1.54267 * 104.19635 * 203.74707 * 11 9 7 13 13 C 1.53871 * 106.60133 * 23.60609 * 12 11 9 14 14 H 1.09001 * 110.03607 * 240.67361 * 13 12 11 15 15 N 1.46502 * 110.03457 * 119.28208 * 13 12 11 16 16 C 1.34780 * 119.99197 * 86.45151 * 15 13 12 17 17 O 1.21587 * 120.00309 * 0.02562 * 16 15 13 18 18 N 1.34780 * 119.99696 * 179.97438 * 16 15 13 19 19 C 1.46493 * 120.00156 * 180.02562 * 18 16 15 20 20 H 1.08998 * 109.67727 * 34.48722 * 19 18 16 21 21 C 1.53408 * 109.68265 * 155.00260 * 19 18 16 22 22 C 1.53126 * 109.41527 * 169.28904 * 21 19 18 23 23 C 1.53338 * 109.53695 * 290.00740 * 22 21 19 24 24 C 1.50937 * 108.42589 * 50.04626 * 23 22 21 25 25 O 1.33824 * 127.79631 * 163.17762 * 24 23 22 26 26 C 1.34525 * 109.41698 * 180.15612 * 25 24 23 27 27 C 1.34769 * 108.48052 * 359.96576 * 26 25 24 28 28 C 1.34884 * 123.90089 * 343.28948 * 24 23 22 29 29 C 1.54271 * 106.59702 * 0.02562 * 13 12 11 30 30 H 0.97003 * 119.99999 * 359.97438 * 1 2 3 31 31 H 1.08996 * 110.48378 * 85.06069 * 11 9 7 32 32 H 1.09003 * 110.48066 * 322.42467 * 11 9 7 33 33 H 1.09002 * 110.03015 * 264.32104 * 12 11 9 34 34 H 1.08994 * 110.03342 * 142.89393 * 12 11 9 35 35 H 0.96995 * 120.00739 * 266.46231 * 15 13 12 36 36 H 0.97006 * 119.99935 * 0.02562 * 18 16 15 37 37 H 1.09002 * 109.47942 * 49.31079 * 21 19 18 38 38 H 1.08994 * 109.48891 * 289.28054 * 21 19 18 39 39 H 1.08997 * 109.45916 * 169.98634 * 22 21 19 40 40 H 1.09003 * 109.44785 * 50.02059 * 22 21 19 41 41 H 1.08999 * 109.67012 * 290.31561 * 23 22 21 42 42 H 1.08999 * 109.70278 * 169.79407 * 23 22 21 43 43 H 1.08000 * 125.75824 * 179.70857 * 26 25 24 44 44 H 1.08003 * 126.67941 * 179.97438 * 27 26 25 45 45 H 1.08995 * 110.48989 * 95.06746 * 29 13 12 46 46 H 1.09000 * 110.48620 * 217.71308 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6413 -2.5914 -0.8984 11 6 0.3766 -2.6282 1.2725 12 6 0.1819 -4.1487 1.4451 13 6 1.3575 -4.8275 0.7205 14 1 0.9840 -5.4664 -0.0798 15 7 2.1422 -5.6201 1.6703 16 6 1.7879 -6.8921 1.9408 17 8 0.8173 -7.3817 1.3963 18 7 2.5101 -7.6215 2.8142 19 6 2.1253 -9.0042 3.1079 20 1 1.7148 -9.4692 2.2117 21 6 3.3528 -9.7923 3.5829 22 6 2.9042 -11.1465 4.1393 23 6 2.1579 -10.9357 5.4621 24 6 1.1059 -9.8738 5.2524 25 8 0.0481 -9.6032 6.0261 26 6 -0.6485 -8.5844 5.4909 27 6 -0.0314 -8.1933 4.3584 28 6 1.0950 -9.0217 4.2069 29 6 2.2259 -3.6957 0.1333 30 1 -0.4850 0.8401 0.0004 31 1 -0.5842 -2.1346 1.1266 32 1 0.8945 -2.2095 2.1354 33 1 -0.7620 -4.4577 0.9960 34 1 0.1952 -4.4091 2.5034 35 1 2.9167 -5.2296 2.1045 36 1 3.2847 -7.2310 3.2484 37 1 3.8657 -9.2305 4.3636 38 1 4.0304 -9.9504 2.7440 39 1 3.7774 -11.7757 4.3112 40 1 2.2422 -11.6322 3.4222 41 1 2.8588 -10.6110 6.2311 42 1 1.6826 -11.8675 5.7685 43 1 -1.5523 -8.1554 5.8976 44 1 -0.3418 -7.3988 3.6960 45 1 3.0422 -3.4497 0.8124 46 1 2.6144 -3.9809 -0.8443 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296108608.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:49 Heat of formation + Delta-G solvation = -34.208145 kcal Electronic energy + Delta-G solvation = -26757.479177 eV Core-core repulsion = 23033.650169 eV Total energy + Delta-G solvation = -3723.829008 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.78537 -39.90566 -37.86609 -36.82981 -34.09192 -33.59649 -32.59492 -31.79300 -29.73508 -28.63948 -28.09840 -26.70948 -24.02521 -23.45007 -22.55375 -21.49337 -20.81013 -19.62799 -19.35495 -19.02231 -17.90394 -17.38551 -16.67853 -16.35896 -15.74447 -15.18008 -15.01630 -14.71260 -14.56924 -14.37234 -14.20244 -13.94765 -13.62744 -13.06191 -12.81215 -12.62365 -12.45980 -12.41613 -12.29754 -11.76344 -11.56991 -11.34201 -11.08147 -11.05804 -10.95530 -10.88453 -10.57701 -10.28958 -9.94025 -9.81308 -9.64253 -9.48581 -9.20622 -9.13427 -8.78699 -8.44644 -8.37628 -8.34609 -5.99783 -4.03338 1.63457 2.50008 2.84568 3.04470 3.30365 3.37455 3.39687 3.48611 4.33021 4.39216 4.42367 4.45300 4.61774 4.74808 4.85750 5.05420 5.16787 5.17804 5.28818 5.32442 5.46859 5.53203 5.57119 5.62748 5.72596 5.85655 5.88872 5.90705 6.04618 6.09055 6.36785 6.41748 6.49811 6.58600 6.62385 6.71411 6.78729 6.93688 7.01427 7.09370 7.13835 7.31269 7.42375 7.74028 7.90667 8.04434 8.28781 8.44062 8.89099 8.98777 9.60728 11.09269 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025601 B = 0.002562 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.462300 B =10925.905419 C =11392.287165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.051 3.949 10 H 0.032 0.968 11 C -0.100 4.100 12 C -0.134 4.134 13 C 0.157 3.843 14 H 0.078 0.922 15 N -0.734 5.734 16 C 0.702 3.298 17 O -0.591 6.591 18 N -0.743 5.743 19 C 0.235 3.765 20 H 0.097 0.903 21 C -0.128 4.128 22 C -0.111 4.111 23 C -0.035 4.035 24 C -0.019 4.019 25 O -0.174 6.174 26 C -0.058 4.058 27 C -0.175 4.175 28 C -0.186 4.186 29 C -0.120 4.120 30 H 0.259 0.741 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.392 0.608 36 H 0.394 0.606 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.201 0.799 44 H 0.149 0.851 45 H 0.060 0.940 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.085 -21.570 11.501 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.033 3.967 10 H 0.050 0.950 11 C -0.138 4.138 12 C -0.173 4.173 13 C 0.053 3.947 14 H 0.097 0.903 15 N -0.388 5.388 16 C 0.402 3.598 17 O -0.469 6.469 18 N -0.398 5.398 19 C 0.129 3.871 20 H 0.115 0.885 21 C -0.166 4.166 22 C -0.149 4.149 23 C -0.072 4.072 24 C -0.071 4.071 25 O -0.070 6.070 26 C -0.125 4.125 27 C -0.194 4.194 28 C -0.189 4.189 29 C -0.159 4.159 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.226 0.774 36 H 0.227 0.773 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.218 0.782 44 H 0.167 0.833 45 H 0.078 0.922 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.947 -22.036 11.218 25.217 hybrid contribution 0.898 1.669 0.395 1.935 sum 5.845 -20.367 11.613 24.163 Atomic orbital electron populations 1.69960 1.05866 1.26414 1.50403 1.24977 0.94828 0.98989 0.95124 0.86648 0.79847 0.83730 0.78053 1.20743 1.21319 1.20004 1.21096 0.92725 0.90466 1.50959 0.92694 1.19553 0.92010 0.91005 0.94167 0.94987 1.22298 1.01584 0.90459 0.99462 1.22659 0.97173 0.98708 0.98789 1.21721 0.91685 0.91435 0.89873 0.90339 1.45556 1.33395 1.11563 1.48249 1.16035 0.82715 0.81352 0.79711 1.90904 1.28855 1.71548 1.55618 1.45132 1.33181 1.13749 1.47750 1.19065 0.91482 0.81369 0.95175 0.88505 1.21917 0.97045 0.96037 1.01622 1.21536 1.00433 0.97045 0.95890 1.20194 0.93022 0.94982 0.99020 1.22286 0.91199 1.01399 0.92184 1.83873 1.32503 1.44251 1.46402 1.24082 0.99667 0.92007 0.96740 1.21598 0.96334 1.02850 0.98629 1.20583 0.99819 0.99531 0.98937 1.22758 0.98735 0.95472 0.98906 0.93076 0.91318 0.93614 0.92701 0.93345 0.77437 0.77285 0.90942 0.90343 0.89923 0.90793 0.89670 0.89817 0.78199 0.83324 0.92152 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 12.02 55.43 0.67 -24.67 16 2 C 0.06 1.72 5.33 -17.82 -0.10 1.62 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.51 -13.80 8.54 -34.44 -0.29 -14.09 16 8 H 0.05 1.45 7.78 -52.49 -0.41 1.04 16 9 C 0.05 1.25 2.82 -89.77 -0.25 1.00 16 10 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 11 C -0.10 -2.31 5.57 -25.07 -0.14 -2.45 16 12 C -0.13 -2.67 6.59 -25.61 -0.17 -2.84 16 13 C 0.16 2.89 3.23 -66.81 -0.22 2.68 16 14 H 0.08 1.54 7.61 -51.93 -0.39 1.15 16 15 N -0.73 -11.24 5.00 -57.58 -0.29 -11.53 16 16 C 0.70 11.01 7.88 -86.91 -0.69 10.33 16 17 O -0.59 -11.55 15.02 5.29 0.08 -11.48 16 18 N -0.74 -8.71 5.02 -59.63 -0.30 -9.01 16 19 C 0.23 2.60 2.82 -68.90 -0.19 2.41 16 20 H 0.10 1.27 7.57 -51.93 -0.39 0.87 16 21 C -0.13 -0.91 5.41 -26.45 -0.14 -1.05 16 22 C -0.11 -0.65 5.89 -26.49 -0.16 -0.80 16 23 C -0.04 -0.24 6.30 -27.59 -0.17 -0.42 16 24 C -0.02 -0.21 7.22 -35.38 -0.26 -0.47 16 25 O -0.17 -2.10 10.65 6.37 0.07 -2.03 16 26 C -0.06 -0.68 12.10 29.50 0.36 -0.33 16 27 C -0.17 -2.43 10.31 -39.90 -0.41 -2.84 16 28 C -0.19 -2.31 5.62 -104.93 -0.59 -2.90 16 29 C -0.12 -2.38 5.94 -25.06 -0.15 -2.53 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.07 1.75 7.37 -51.93 -0.38 1.37 16 32 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 33 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.93 7.92 -51.93 -0.41 0.51 16 35 H 0.39 5.06 8.35 -40.82 -0.34 4.72 16 36 H 0.39 3.57 8.61 -40.82 -0.35 3.22 16 37 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.20 1.69 8.06 -52.49 -0.42 1.26 16 44 H 0.15 2.37 7.21 -52.48 -0.38 1.99 16 45 H 0.06 1.14 7.63 -51.93 -0.40 0.75 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 367.80 15.07 5.54 5.54 Total: -1.00 -32.26 367.80 -10.05 -42.31 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.23 Total: 7.53 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -3.57 Total: -12.69 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.08 Total: -45.21 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.15 Total: -13.51 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.26 -10.05 -42.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296108608.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.102 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds