Wall clock time and date at job start Tue Mar 31 2020 12:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00181 * 2 1 4 4 H 1.48506 * 109.47096 * 270.00099 * 3 2 1 5 5 H 1.48504 * 109.46989 * 29.99678 * 3 2 1 6 6 H 1.48497 * 109.47124 * 150.00057 * 3 2 1 7 7 C 1.37879 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00435 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99554 * 0.02562 * 7 2 1 10 10 H 1.09006 * 110.66999 * 61.78290 * 9 7 2 11 11 C 1.54888 * 110.75895 * 298.54516 * 9 7 2 12 12 C 1.54267 * 104.19635 * 203.74707 * 11 9 7 13 13 C 1.53871 * 106.60133 * 23.60609 * 12 11 9 14 14 H 1.09001 * 110.03607 * 240.67361 * 13 12 11 15 15 N 1.46502 * 110.03457 * 119.28208 * 13 12 11 16 16 C 1.34780 * 119.99197 * 86.45151 * 15 13 12 17 17 O 1.21587 * 120.00309 * 0.02562 * 16 15 13 18 18 N 1.34780 * 119.99696 * 179.97438 * 16 15 13 19 19 C 1.46493 * 120.00156 * 180.02562 * 18 16 15 20 20 H 1.08998 * 109.67727 * 34.48722 * 19 18 16 21 21 C 1.53408 * 109.68265 * 155.00260 * 19 18 16 22 22 C 1.53126 * 109.41527 * 169.28904 * 21 19 18 23 23 C 1.53338 * 109.53695 * 290.00740 * 22 21 19 24 24 C 1.50937 * 108.42589 * 50.04626 * 23 22 21 25 25 O 1.33824 * 127.79631 * 163.17762 * 24 23 22 26 26 C 1.34525 * 109.41698 * 180.15612 * 25 24 23 27 27 C 1.34769 * 108.48052 * 359.96576 * 26 25 24 28 28 C 1.34884 * 123.90089 * 343.28948 * 24 23 22 29 29 C 1.54271 * 106.59702 * 0.02562 * 13 12 11 30 30 H 0.97003 * 119.99999 * 359.97438 * 1 2 3 31 31 H 1.08996 * 110.48378 * 85.06069 * 11 9 7 32 32 H 1.09003 * 110.48066 * 322.42467 * 11 9 7 33 33 H 1.09002 * 110.03015 * 264.32104 * 12 11 9 34 34 H 1.08994 * 110.03342 * 142.89393 * 12 11 9 35 35 H 0.96995 * 120.00739 * 266.46231 * 15 13 12 36 36 H 0.97006 * 119.99935 * 0.02562 * 18 16 15 37 37 H 1.09002 * 109.47942 * 49.31079 * 21 19 18 38 38 H 1.08994 * 109.48891 * 289.28054 * 21 19 18 39 39 H 1.08997 * 109.45916 * 169.98634 * 22 21 19 40 40 H 1.09003 * 109.44785 * 50.02059 * 22 21 19 41 41 H 1.08999 * 109.67012 * 290.31561 * 23 22 21 42 42 H 1.08999 * 109.70278 * 169.79407 * 23 22 21 43 43 H 1.08000 * 125.75824 * 179.70857 * 26 25 24 44 44 H 1.08003 * 126.67941 * 179.97438 * 27 26 25 45 45 H 1.08995 * 110.48989 * 95.06746 * 29 13 12 46 46 H 1.09000 * 110.48620 * 217.71308 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6413 -2.5914 -0.8984 11 6 0.3766 -2.6282 1.2725 12 6 0.1819 -4.1487 1.4451 13 6 1.3575 -4.8275 0.7205 14 1 0.9840 -5.4664 -0.0798 15 7 2.1422 -5.6201 1.6703 16 6 1.7879 -6.8921 1.9408 17 8 0.8173 -7.3817 1.3963 18 7 2.5101 -7.6215 2.8142 19 6 2.1253 -9.0042 3.1079 20 1 1.7148 -9.4692 2.2117 21 6 3.3528 -9.7923 3.5829 22 6 2.9042 -11.1465 4.1393 23 6 2.1579 -10.9357 5.4621 24 6 1.1059 -9.8738 5.2524 25 8 0.0481 -9.6032 6.0261 26 6 -0.6485 -8.5844 5.4909 27 6 -0.0314 -8.1933 4.3584 28 6 1.0950 -9.0217 4.2069 29 6 2.2259 -3.6957 0.1333 30 1 -0.4850 0.8401 0.0004 31 1 -0.5842 -2.1346 1.1266 32 1 0.8945 -2.2095 2.1354 33 1 -0.7620 -4.4577 0.9960 34 1 0.1952 -4.4091 2.5034 35 1 2.9167 -5.2296 2.1045 36 1 3.2847 -7.2310 3.2484 37 1 3.8657 -9.2305 4.3636 38 1 4.0304 -9.9504 2.7440 39 1 3.7774 -11.7757 4.3112 40 1 2.2422 -11.6322 3.4222 41 1 2.8588 -10.6110 6.2311 42 1 1.6826 -11.8675 5.7685 43 1 -1.5523 -8.1554 5.8976 44 1 -0.3418 -7.3988 3.6960 45 1 3.0422 -3.4497 0.8124 46 1 2.6144 -3.9809 -0.8443 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296108608.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:48 Heat of formation + Delta-G solvation = -54.485248 kcal Electronic energy + Delta-G solvation = -26758.358458 eV Core-core repulsion = 23033.650169 eV Total energy + Delta-G solvation = -3724.708289 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.67575 -41.16876 -39.11541 -38.03720 -35.26051 -35.05340 -33.86740 -33.28581 -30.53144 -29.96734 -29.53810 -28.28234 -25.80529 -24.41588 -23.24765 -22.49988 -22.00956 -21.29098 -20.88378 -20.04127 -19.09443 -18.53344 -18.22050 -17.45612 -16.98784 -16.61934 -16.33473 -16.06964 -15.64046 -15.57927 -15.28432 -15.18379 -14.54360 -14.35219 -14.02463 -13.86489 -13.78837 -13.62005 -13.20980 -13.08550 -13.01741 -12.79190 -12.56798 -12.41848 -12.19832 -12.10231 -11.85335 -11.66413 -11.63423 -11.38170 -11.19793 -11.04775 -10.80713 -10.65582 -10.45738 -10.31802 -9.74730 -9.23216 -8.08987 -6.19580 0.76693 1.43491 1.44167 1.48712 1.54090 1.93431 2.04247 2.23616 2.45591 3.21809 3.34819 3.69110 3.81201 3.85448 3.94405 4.05483 4.11281 4.18394 4.21489 4.32708 4.45368 4.58840 4.62853 4.69355 4.78205 4.87308 4.93610 4.96259 5.00204 5.04297 5.07288 5.14225 5.16797 5.22509 5.30475 5.30735 5.34591 5.41966 5.55352 5.63597 5.67033 5.72289 5.93685 6.00509 6.09305 6.19775 6.38100 6.91069 7.17794 7.48231 7.67017 8.99492 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025601 B = 0.002562 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.462300 B =10925.905419 C =11392.287165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.954 3.046 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.040 3.960 10 H 0.000 1.000 11 C -0.088 4.088 12 C -0.123 4.123 13 C 0.172 3.828 14 H 0.067 0.933 15 N -0.725 5.725 16 C 0.701 3.299 17 O -0.632 6.632 18 N -0.725 5.725 19 C 0.232 3.768 20 H 0.070 0.930 21 C -0.120 4.120 22 C -0.107 4.107 23 C -0.035 4.035 24 C -0.013 4.013 25 O -0.180 6.180 26 C -0.054 4.054 27 C -0.210 4.210 28 C -0.211 4.211 29 C -0.105 4.105 30 H 0.259 0.741 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.407 0.593 36 H 0.410 0.590 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.065 0.935 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.227 0.773 44 H 0.120 0.880 45 H 0.075 0.925 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.875 -23.143 13.239 28.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.189 4.189 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.078 0.922 9 C 0.021 3.979 10 H 0.018 0.982 11 C -0.126 4.126 12 C -0.162 4.162 13 C 0.066 3.934 14 H 0.085 0.915 15 N -0.380 5.380 16 C 0.401 3.599 17 O -0.514 6.514 18 N -0.380 5.380 19 C 0.127 3.873 20 H 0.088 0.912 21 C -0.158 4.158 22 C -0.145 4.145 23 C -0.072 4.072 24 C -0.064 4.064 25 O -0.076 6.076 26 C -0.120 4.120 27 C -0.229 4.229 28 C -0.213 4.213 29 C -0.143 4.143 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.244 0.756 36 H 0.246 0.754 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.134 0.866 40 H 0.084 0.916 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.244 0.756 44 H 0.138 0.862 45 H 0.093 0.907 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.800 -23.628 12.992 28.069 hybrid contribution -0.031 2.122 -0.140 2.127 sum 7.769 -21.506 12.852 26.230 Atomic orbital electron populations 1.70108 1.07379 1.27097 1.51464 1.25795 0.95611 1.02547 0.94945 0.85614 0.78844 0.79417 0.78118 1.20345 1.21372 1.18795 1.21484 0.93154 0.91577 1.50365 0.92182 1.19538 0.92833 0.92401 0.93101 0.98223 1.22065 0.99584 0.92360 0.98640 1.22520 0.97755 0.96390 0.99495 1.21294 0.91102 0.91049 0.89938 0.91467 1.45233 1.33544 1.11387 1.47850 1.16160 0.82463 0.81325 0.79977 1.90881 1.30805 1.72372 1.57304 1.44983 1.32800 1.13870 1.46358 1.19222 0.93263 0.80907 0.93940 0.91199 1.21924 0.95114 0.96219 1.02538 1.21587 1.01399 0.96527 0.94987 1.20474 0.92237 0.94257 1.00234 1.23080 0.91002 1.01299 0.91004 1.83900 1.32913 1.44118 1.46665 1.24509 1.00015 0.91490 0.95993 1.21561 0.98233 1.03542 0.99584 1.20765 1.00090 1.00284 1.00195 1.22551 0.98035 0.93703 0.99994 0.93232 0.94454 0.94418 0.93457 0.92481 0.75645 0.75380 0.89521 0.89037 0.86615 0.91618 0.87587 0.88264 0.75625 0.86198 0.90690 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.97 12.02 21.45 0.26 -53.71 16 2 C 0.01 0.53 5.33 84.66 0.45 0.98 16 3 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.53 -28.46 8.54 25.60 0.22 -28.24 16 8 H 0.06 3.11 7.78 -2.91 -0.02 3.08 16 9 C 0.04 2.00 2.82 -10.24 -0.03 1.97 16 10 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 11 C -0.09 -4.22 5.57 31.67 0.18 -4.04 16 12 C -0.12 -4.99 6.59 31.32 0.21 -4.78 16 13 C 0.17 6.33 3.23 45.72 0.15 6.48 16 14 H 0.07 2.68 7.61 -2.39 -0.02 2.66 16 15 N -0.73 -21.57 5.00 -454.33 -2.27 -23.84 16 16 C 0.70 21.86 7.88 179.05 1.41 23.28 16 17 O -0.63 -25.43 15.02 -3.99 -0.06 -25.49 16 18 N -0.72 -16.23 5.02 -460.84 -2.31 -18.55 16 19 C 0.23 4.95 2.82 44.37 0.13 5.07 16 20 H 0.07 1.87 7.57 -2.39 -0.02 1.85 16 21 C -0.12 -1.34 5.41 30.77 0.17 -1.17 16 22 C -0.11 -0.87 5.89 30.75 0.18 -0.69 16 23 C -0.04 -0.36 6.30 30.04 0.19 -0.17 16 24 C -0.01 -0.25 7.22 24.99 0.18 -0.07 16 25 O -0.18 -4.10 10.65 -0.12 0.00 -4.10 16 26 C -0.05 -1.24 12.10 67.02 0.81 -0.43 16 27 C -0.21 -5.99 10.31 22.06 0.23 -5.76 16 28 C -0.21 -5.15 5.62 -20.06 -0.11 -5.26 16 29 C -0.10 -4.08 5.94 31.68 0.19 -3.89 16 30 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.04 1.99 7.37 -2.39 -0.02 1.97 16 32 H 0.04 1.82 8.04 -2.39 -0.02 1.81 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.06 2.21 7.92 -2.39 -0.02 2.19 16 35 H 0.41 9.69 8.35 -92.71 -0.77 8.91 16 36 H 0.41 6.51 8.61 -92.70 -0.80 5.71 16 37 H 0.09 0.76 8.10 -2.39 -0.02 0.74 16 38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.07 0.67 8.11 -2.39 -0.02 0.65 16 41 H 0.11 0.72 8.14 -2.39 -0.02 0.71 16 42 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.23 3.65 8.06 -2.91 -0.02 3.63 16 44 H 0.12 4.10 7.21 -2.91 -0.02 4.08 16 45 H 0.07 2.70 7.63 -2.39 -0.02 2.68 16 46 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -72.91 367.80 1.60 -71.31 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: -0.57 Total: 25.86 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 4.54 Total: -16.73 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -4.33 Total: -96.10 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.06 Total: -29.58 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -72.91 1.60 -71.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296108608.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.826 kcal (2) G-P(sol) polarization free energy of solvation -72.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds