Wall clock time and date at job start Tue Mar 31 2020 12:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 H 1.09002 * 110.67135 * 56.76779 * 9 7 2 11 11 C 1.54885 * 110.75780 * 293.32661 * 9 7 2 12 12 C 1.54261 * 104.19817 * 203.74593 * 11 9 7 13 13 C 1.53877 * 106.59853 * 23.60655 * 12 11 9 14 14 H 1.08997 * 110.04012 * 240.71753 * 13 12 11 15 15 N 1.46509 * 110.03123 * 119.28443 * 13 12 11 16 16 C 1.34777 * 119.99572 * 87.83768 * 15 13 12 17 17 O 1.21583 * 120.00142 * 359.97438 * 16 15 13 18 18 N 1.34775 * 119.99364 * 180.02562 * 16 15 13 19 19 C 1.46503 * 119.99500 * 179.97438 * 18 16 15 20 20 H 1.08998 * 109.67865 * 324.99693 * 19 18 16 21 21 C 1.53407 * 109.68164 * 204.47944 * 19 18 16 22 22 C 1.53101 * 109.42508 * 190.76658 * 21 19 18 23 23 C 1.53327 * 109.58696 * 69.91494 * 22 21 19 24 24 C 1.50934 * 108.42754 * 309.98781 * 23 22 21 25 25 O 1.33832 * 127.79791 * 196.80948 * 24 23 22 26 26 C 1.34514 * 109.41710 * 179.83127 * 25 24 23 27 27 C 1.34775 * 108.48515 * 0.03938 * 26 25 24 28 28 C 1.34881 * 123.90356 * 16.70159 * 24 23 22 29 29 C 1.54272 * 106.59555 * 0.02562 * 13 12 11 30 30 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 31 31 H 1.08997 * 110.48739 * 322.42539 * 11 9 7 32 32 H 1.08998 * 110.48608 * 85.06743 * 11 9 7 33 33 H 1.09002 * 110.03573 * 264.33098 * 12 11 9 34 34 H 1.08999 * 110.07547 * 142.91293 * 12 11 9 35 35 H 0.96999 * 119.99890 * 267.83614 * 15 13 12 36 36 H 0.96992 * 120.00494 * 359.97438 * 18 16 15 37 37 H 1.09002 * 109.47851 * 310.69721 * 21 19 18 38 38 H 1.08996 * 109.47798 * 70.72928 * 21 19 18 39 39 H 1.09009 * 109.41191 * 309.89416 * 22 21 19 40 40 H 1.09004 * 109.45834 * 189.96771 * 22 21 19 41 41 H 1.09004 * 109.67745 * 190.24995 * 23 22 21 42 42 H 1.09004 * 109.67122 * 69.71752 * 23 22 21 43 43 H 1.07999 * 125.76149 * 180.02562 * 26 25 24 44 44 H 1.08000 * 126.67886 * 179.97438 * 27 26 25 45 45 H 1.09001 * 110.48306 * 217.70684 * 29 13 12 46 46 H 1.08998 * 110.48936 * 95.06763 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 1 3.8966 -0.6354 0.8519 11 6 4.0599 -0.6204 -1.3311 12 6 5.4740 -1.2254 -1.4497 13 6 5.4743 -2.5111 -0.6043 14 1 6.2140 -2.4340 0.1925 15 7 5.7680 -3.6692 -1.4522 16 6 7.0459 -4.0384 -1.6695 17 8 7.9549 -3.4102 -1.1622 18 7 7.3161 -5.1034 -2.4499 19 6 8.7051 -5.5045 -2.6866 20 1 9.3397 -4.6195 -2.7341 21 6 8.8012 -6.2806 -4.0063 22 6 10.1856 -6.9247 -4.1187 23 6 10.3084 -8.0609 -3.0965 24 6 9.8796 -7.5373 -1.7474 25 8 10.1159 -8.0763 -0.5454 26 6 9.5682 -7.3013 0.4078 27 6 8.9706 -6.2500 -0.1873 28 6 9.1708 -6.4034 -1.5710 29 6 4.0601 -2.6428 -0.0020 30 1 -0.4850 0.8401 0.0004 31 1 3.4381 -0.9371 -2.1684 32 1 4.1130 0.4673 -1.2842 33 1 6.2137 -0.5243 -1.0631 34 1 5.6932 -1.4629 -2.4906 35 1 5.0428 -4.1701 -1.8572 36 1 6.5910 -5.6044 -2.8549 37 1 8.0369 -7.0575 -4.0275 38 1 8.6484 -5.5973 -4.8417 39 1 10.9513 -6.1743 -3.9214 40 1 10.3196 -7.3244 -5.1239 41 1 11.3433 -8.3995 -3.0467 42 1 9.6642 -8.8898 -3.3900 43 1 9.6014 -7.4896 1.4707 44 1 8.4408 -5.4466 0.3028 45 1 4.1133 -3.0309 1.0151 46 1 3.4386 -3.2863 -0.6248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296108612.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:51 Heat of formation + Delta-G solvation = -29.349283 kcal Electronic energy + Delta-G solvation = -26725.132226 eV Core-core repulsion = 23001.513915 eV Total energy + Delta-G solvation = -3723.618311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.84766 -40.00976 -38.00904 -37.02055 -34.15954 -33.67841 -32.64142 -31.97854 -29.82639 -28.81735 -28.36653 -27.22172 -23.96690 -23.36021 -22.60355 -21.58219 -20.92889 -19.73482 -19.44962 -19.21296 -17.99975 -17.48576 -16.92290 -16.52004 -15.81192 -15.44036 -15.12262 -14.84710 -14.70528 -14.48645 -14.14971 -13.90323 -13.66483 -13.12017 -12.88328 -12.76326 -12.52717 -12.52063 -12.46762 -12.36554 -11.62603 -11.61266 -11.36081 -11.08732 -11.06986 -10.96675 -10.45474 -10.14309 -10.03395 -9.88720 -9.72891 -9.68394 -9.47058 -9.21519 -9.01851 -8.59385 -8.51526 -8.43585 -6.07271 -4.06277 1.57521 2.42973 2.78764 2.95874 3.30430 3.39146 3.39748 3.42342 4.27546 4.33171 4.38078 4.43378 4.55922 4.69570 4.80667 5.00373 5.12344 5.12450 5.21323 5.24135 5.35430 5.43559 5.50286 5.51021 5.55861 5.63184 5.80788 5.85223 5.97485 6.02951 6.14777 6.18286 6.32875 6.42721 6.46862 6.51801 6.54449 6.60564 6.73863 6.87060 6.97188 7.03649 7.10731 7.20816 7.52896 7.77083 8.19226 8.52081 8.79490 8.95901 9.55978 11.05865 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028838 B = 0.002557 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.720408 B =10949.838841 C =11275.935181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.263 1.263 7 C -0.509 4.509 8 H 0.073 0.927 9 C 0.013 3.987 10 H 0.036 0.964 11 C -0.128 4.128 12 C -0.131 4.131 13 C 0.156 3.844 14 H 0.082 0.918 15 N -0.734 5.734 16 C 0.703 3.297 17 O -0.591 6.591 18 N -0.742 5.742 19 C 0.235 3.765 20 H 0.097 0.903 21 C -0.128 4.128 22 C -0.111 4.111 23 C -0.036 4.036 24 C -0.018 4.018 25 O -0.174 6.174 26 C -0.058 4.058 27 C -0.176 4.176 28 C -0.186 4.186 29 C -0.110 4.110 30 H 0.263 0.737 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.394 0.606 36 H 0.394 0.606 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.201 0.799 44 H 0.148 0.852 45 H 0.059 0.941 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.269 -16.836 -8.177 27.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.188 1.188 7 C -0.547 4.547 8 H 0.091 0.909 9 C -0.006 4.006 10 H 0.054 0.946 11 C -0.166 4.166 12 C -0.170 4.170 13 C 0.052 3.948 14 H 0.101 0.899 15 N -0.388 5.388 16 C 0.403 3.597 17 O -0.469 6.469 18 N -0.397 5.397 19 C 0.129 3.871 20 H 0.115 0.885 21 C -0.167 4.167 22 C -0.149 4.149 23 C -0.073 4.073 24 C -0.069 4.069 25 O -0.070 6.070 26 C -0.125 4.125 27 C -0.195 4.195 28 C -0.189 4.189 29 C -0.148 4.148 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.228 0.772 36 H 0.228 0.772 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.218 0.782 44 H 0.166 0.834 45 H 0.077 0.923 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 21.098 -16.370 -7.646 27.777 hybrid contribution -0.517 0.704 -0.165 0.889 sum 20.581 -15.666 -7.811 27.018 Atomic orbital electron populations 1.69906 1.06310 1.26914 1.51004 1.24991 0.94637 0.99052 0.94405 0.86897 0.80221 0.83678 0.78410 1.20387 1.22115 1.18791 1.20979 0.88585 0.94373 1.50723 0.90886 1.20084 0.96479 0.91081 0.92948 0.94561 1.22778 0.93842 0.98561 1.01409 1.22577 0.98585 0.96649 0.99224 1.21697 0.98176 0.83345 0.91622 0.89939 1.45510 1.05447 1.33718 1.54146 1.16018 0.83817 0.80422 0.79480 1.90904 1.44702 1.56590 1.54754 1.45125 1.07927 1.32278 1.54371 1.19073 0.82285 0.95575 0.90154 0.88525 1.21914 0.98049 1.00007 0.96684 1.21532 0.97334 0.97367 0.98687 1.20202 1.02304 0.98558 0.86196 1.22301 1.03345 0.95076 0.86193 1.83876 1.61850 1.46556 1.14707 1.24075 1.01883 0.92830 0.93722 1.21581 1.04053 1.00308 0.93545 1.20575 1.04766 0.97969 0.95604 1.22576 0.92370 1.00294 0.99535 0.92715 0.91601 0.93701 0.92364 0.92552 0.77211 0.77189 0.90898 0.90287 0.90803 0.89872 0.89780 0.89612 0.78216 0.83385 0.92258 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 2 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 3 Si 0.88 21.68 24.79 -169.99 -4.21 17.46 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.26 -6.24 6.46 56.52 0.36 -5.87 16 7 C -0.51 -13.86 9.07 -34.44 -0.31 -14.17 16 8 H 0.07 2.14 8.01 -52.49 -0.42 1.72 16 9 C 0.01 0.30 2.27 -89.77 -0.20 0.10 16 10 H 0.04 0.85 7.02 -51.93 -0.36 0.49 16 11 C -0.13 -2.67 5.32 -25.08 -0.13 -2.81 16 12 C -0.13 -2.37 6.59 -25.61 -0.17 -2.54 16 13 C 0.16 2.66 3.25 -66.80 -0.22 2.45 16 14 H 0.08 1.49 7.57 -51.93 -0.39 1.10 16 15 N -0.73 -10.48 4.99 -57.57 -0.29 -10.77 16 16 C 0.70 10.39 7.87 -86.92 -0.68 9.70 16 17 O -0.59 -10.97 14.91 5.29 0.08 -10.89 16 18 N -0.74 -8.20 5.03 -59.63 -0.30 -8.50 16 19 C 0.23 2.47 2.82 -68.90 -0.19 2.28 16 20 H 0.10 1.22 7.59 -51.93 -0.39 0.82 16 21 C -0.13 -0.86 5.41 -26.47 -0.14 -1.01 16 22 C -0.11 -0.61 5.89 -26.51 -0.16 -0.77 16 23 C -0.04 -0.23 6.30 -27.60 -0.17 -0.40 16 24 C -0.02 -0.18 7.22 -35.39 -0.26 -0.44 16 25 O -0.17 -1.98 10.65 6.38 0.07 -1.91 16 26 C -0.06 -0.63 12.10 29.50 0.36 -0.28 16 27 C -0.18 -2.27 10.26 -39.90 -0.41 -2.68 16 28 C -0.19 -2.19 5.62 -104.93 -0.59 -2.78 16 29 C -0.11 -2.05 5.94 -25.06 -0.15 -2.20 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.07 1.40 8.04 -51.93 -0.42 0.99 16 32 H 0.04 0.97 5.41 -51.93 -0.28 0.69 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.97 7.92 -51.93 -0.41 0.55 16 35 H 0.39 4.72 8.37 -40.82 -0.34 4.38 16 36 H 0.39 3.33 8.61 -40.82 -0.35 2.98 16 37 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.44 8.12 -51.92 -0.42 0.02 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.20 1.49 8.06 -52.49 -0.42 1.07 16 44 H 0.15 2.17 7.14 -52.49 -0.37 1.79 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.07 1.22 7.63 -51.93 -0.40 0.83 16 LS Contribution 361.12 15.07 5.44 5.44 Total: -1.00 -33.49 361.12 -9.09 -42.58 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -7.12 Total: 6.78 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -3.53 Total: -13.63 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.19 Total: -45.84 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.15 Total: -12.80 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.21 Total: 17.46 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.49 -9.09 -42.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296108612.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.229 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds