Wall clock time and date at job start Tue Mar 31 2020 12:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 H 1.09002 * 110.67135 * 56.76779 * 9 7 2 11 11 C 1.54885 * 110.75780 * 293.32661 * 9 7 2 12 12 C 1.54261 * 104.19817 * 203.74593 * 11 9 7 13 13 C 1.53877 * 106.59853 * 23.60655 * 12 11 9 14 14 H 1.08997 * 110.04012 * 240.71753 * 13 12 11 15 15 N 1.46509 * 110.03123 * 119.28443 * 13 12 11 16 16 C 1.34777 * 119.99572 * 87.83768 * 15 13 12 17 17 O 1.21583 * 120.00142 * 359.97438 * 16 15 13 18 18 N 1.34775 * 119.99364 * 180.02562 * 16 15 13 19 19 C 1.46503 * 119.99500 * 179.97438 * 18 16 15 20 20 H 1.08998 * 109.67865 * 324.99693 * 19 18 16 21 21 C 1.53407 * 109.68164 * 204.47944 * 19 18 16 22 22 C 1.53101 * 109.42508 * 190.76658 * 21 19 18 23 23 C 1.53327 * 109.58696 * 69.91494 * 22 21 19 24 24 C 1.50934 * 108.42754 * 309.98781 * 23 22 21 25 25 O 1.33832 * 127.79791 * 196.80948 * 24 23 22 26 26 C 1.34514 * 109.41710 * 179.83127 * 25 24 23 27 27 C 1.34775 * 108.48515 * 0.03938 * 26 25 24 28 28 C 1.34881 * 123.90356 * 16.70159 * 24 23 22 29 29 C 1.54272 * 106.59555 * 0.02562 * 13 12 11 30 30 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 31 31 H 1.08997 * 110.48739 * 322.42539 * 11 9 7 32 32 H 1.08998 * 110.48608 * 85.06743 * 11 9 7 33 33 H 1.09002 * 110.03573 * 264.33098 * 12 11 9 34 34 H 1.08999 * 110.07547 * 142.91293 * 12 11 9 35 35 H 0.96999 * 119.99890 * 267.83614 * 15 13 12 36 36 H 0.96992 * 120.00494 * 359.97438 * 18 16 15 37 37 H 1.09002 * 109.47851 * 310.69721 * 21 19 18 38 38 H 1.08996 * 109.47798 * 70.72928 * 21 19 18 39 39 H 1.09009 * 109.41191 * 309.89416 * 22 21 19 40 40 H 1.09004 * 109.45834 * 189.96771 * 22 21 19 41 41 H 1.09004 * 109.67745 * 190.24995 * 23 22 21 42 42 H 1.09004 * 109.67122 * 69.71752 * 23 22 21 43 43 H 1.07999 * 125.76149 * 180.02562 * 26 25 24 44 44 H 1.08000 * 126.67886 * 179.97438 * 27 26 25 45 45 H 1.09001 * 110.48306 * 217.70684 * 29 13 12 46 46 H 1.08998 * 110.48936 * 95.06763 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 1 3.8966 -0.6354 0.8519 11 6 4.0599 -0.6204 -1.3311 12 6 5.4740 -1.2254 -1.4497 13 6 5.4743 -2.5111 -0.6043 14 1 6.2140 -2.4340 0.1925 15 7 5.7680 -3.6692 -1.4522 16 6 7.0459 -4.0384 -1.6695 17 8 7.9549 -3.4102 -1.1622 18 7 7.3161 -5.1034 -2.4499 19 6 8.7051 -5.5045 -2.6866 20 1 9.3397 -4.6195 -2.7341 21 6 8.8012 -6.2806 -4.0063 22 6 10.1856 -6.9247 -4.1187 23 6 10.3084 -8.0609 -3.0965 24 6 9.8796 -7.5373 -1.7474 25 8 10.1159 -8.0763 -0.5454 26 6 9.5682 -7.3013 0.4078 27 6 8.9706 -6.2500 -0.1873 28 6 9.1708 -6.4034 -1.5710 29 6 4.0601 -2.6428 -0.0020 30 1 -0.4850 0.8401 0.0004 31 1 3.4381 -0.9371 -2.1684 32 1 4.1130 0.4673 -1.2842 33 1 6.2137 -0.5243 -1.0631 34 1 5.6932 -1.4629 -2.4906 35 1 5.0428 -4.1701 -1.8572 36 1 6.5910 -5.6044 -2.8549 37 1 8.0369 -7.0575 -4.0275 38 1 8.6484 -5.5973 -4.8417 39 1 10.9513 -6.1743 -3.9214 40 1 10.3196 -7.3244 -5.1239 41 1 11.3433 -8.3995 -3.0467 42 1 9.6642 -8.8898 -3.3900 43 1 9.6014 -7.4896 1.4707 44 1 8.4408 -5.4466 0.3028 45 1 4.1133 -3.0309 1.0151 46 1 3.4386 -3.2863 -0.6248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296108612.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:50 Heat of formation + Delta-G solvation = -52.012425 kcal Electronic energy + Delta-G solvation = -26726.114974 eV Core-core repulsion = 23001.513915 eV Total energy + Delta-G solvation = -3724.601059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.67258 -41.18850 -39.22759 -38.07982 -35.24855 -35.05495 -34.02237 -33.37785 -30.64313 -30.15646 -29.61017 -28.60731 -25.55118 -24.40777 -23.25504 -22.52946 -22.02863 -21.23543 -21.01926 -20.06714 -19.10746 -18.90981 -18.27772 -17.42334 -16.98003 -16.83162 -16.48280 -15.90475 -15.72169 -15.42070 -15.27571 -15.21677 -14.78081 -14.44061 -14.14389 -14.08808 -13.86135 -13.79498 -13.30015 -13.18585 -13.08320 -12.85914 -12.60450 -12.28299 -12.20083 -11.86404 -11.83366 -11.68272 -11.62682 -11.51291 -11.26484 -11.18626 -11.02846 -10.68225 -10.64737 -10.31698 -9.76826 -9.22859 -8.27290 -6.29682 0.77151 1.34188 1.37899 1.47752 1.49248 1.92934 2.04732 2.23005 2.35964 3.08432 3.33113 3.68732 3.80460 3.83001 3.86329 3.93155 4.10535 4.11399 4.18200 4.32771 4.44643 4.58184 4.62062 4.62689 4.66794 4.74197 4.87602 4.91374 4.96059 4.97289 4.99782 5.00149 5.13324 5.14627 5.21847 5.25835 5.30788 5.33776 5.42552 5.55503 5.62695 5.64212 5.70674 5.79443 6.07573 6.20291 6.34188 6.76659 7.15931 7.35912 7.65910 8.89224 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028838 B = 0.002557 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.720408 B =10949.838841 C =11275.935181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.014 3.986 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.296 1.296 6 H -0.247 1.247 7 C -0.507 4.507 8 H 0.039 0.961 9 C 0.005 3.995 10 H 0.031 0.969 11 C -0.123 4.123 12 C -0.122 4.122 13 C 0.169 3.831 14 H 0.074 0.926 15 N -0.727 5.727 16 C 0.702 3.298 17 O -0.630 6.630 18 N -0.726 5.726 19 C 0.233 3.767 20 H 0.070 0.930 21 C -0.121 4.121 22 C -0.107 4.107 23 C -0.036 4.036 24 C -0.014 4.014 25 O -0.181 6.181 26 C -0.053 4.053 27 C -0.209 4.209 28 C -0.210 4.210 29 C -0.100 4.100 30 H 0.264 0.736 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.407 0.593 36 H 0.409 0.591 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.114 0.886 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.229 0.771 44 H 0.123 0.877 45 H 0.063 0.937 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.469 -18.206 -9.921 30.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.183 4.183 3 Si 0.762 3.238 4 H -0.192 1.192 5 H -0.223 1.223 6 H -0.171 1.171 7 C -0.545 4.545 8 H 0.057 0.943 9 C -0.014 4.014 10 H 0.050 0.950 11 C -0.161 4.161 12 C -0.161 4.161 13 C 0.064 3.936 14 H 0.092 0.908 15 N -0.382 5.382 16 C 0.402 3.598 17 O -0.511 6.511 18 N -0.381 5.381 19 C 0.127 3.873 20 H 0.088 0.912 21 C -0.159 4.159 22 C -0.145 4.145 23 C -0.072 4.072 24 C -0.065 4.065 25 O -0.077 6.077 26 C -0.120 4.120 27 C -0.228 4.228 28 C -0.213 4.213 29 C -0.138 4.138 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.243 0.757 36 H 0.246 0.754 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.132 0.868 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.245 0.755 44 H 0.141 0.859 45 H 0.082 0.918 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 23.303 -17.794 -9.427 30.798 hybrid contribution -1.219 1.023 0.419 1.646 sum 22.084 -16.771 -9.008 29.156 Atomic orbital electron populations 1.70045 1.08103 1.27848 1.53170 1.25797 0.95297 1.02746 0.94442 0.85963 0.79444 0.79280 0.79070 1.19193 1.22320 1.17114 1.21273 0.91061 0.92940 1.49257 0.94296 1.20060 0.93546 0.93933 0.93862 0.95049 1.22630 0.95392 0.98328 0.99744 1.22489 0.96588 0.96813 1.00168 1.21335 0.96610 0.84064 0.91640 0.90790 1.45249 1.05934 1.33174 1.53844 1.16128 0.83227 0.80938 0.79529 1.90880 1.45818 1.58110 1.56333 1.45001 1.09003 1.31048 1.53034 1.19202 0.81092 0.94951 0.92025 0.91173 1.21920 0.99435 1.00131 0.94415 1.21576 0.96094 0.96859 0.99986 1.20461 1.03515 0.99335 0.83929 1.23051 1.01923 0.94360 0.87141 1.83901 1.61815 1.46712 1.15253 1.24541 1.00617 0.91960 0.94858 1.21568 1.05700 1.00791 0.94762 1.20752 1.06119 0.99103 0.95325 1.22424 0.93245 0.97880 1.00253 0.92686 0.92282 0.94098 0.92015 0.91322 0.75681 0.75425 0.89576 0.89176 0.91599 0.86762 0.88298 0.87661 0.75494 0.85858 0.91787 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.02 13.96 21.45 0.30 -58.72 16 2 C 0.01 0.81 5.46 84.66 0.46 1.27 16 3 Si 0.94 44.62 24.79 68.60 1.70 46.32 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.25 -11.05 6.46 99.48 0.64 -10.40 16 7 C -0.51 -28.11 9.07 25.60 0.23 -27.88 16 8 H 0.04 2.36 8.01 -2.91 -0.02 2.34 16 9 C 0.01 0.23 2.27 -10.24 -0.02 0.21 16 10 H 0.03 1.45 7.02 -2.39 -0.02 1.43 16 11 C -0.12 -4.98 5.32 31.67 0.17 -4.81 16 12 C -0.12 -4.17 6.59 31.32 0.21 -3.97 16 13 C 0.17 5.59 3.25 45.72 0.15 5.73 16 14 H 0.07 2.63 7.57 -2.39 -0.02 2.61 16 15 N -0.73 -19.87 4.99 -454.33 -2.27 -22.14 16 16 C 0.70 20.30 7.87 179.05 1.41 21.71 16 17 O -0.63 -23.54 14.91 -3.98 -0.06 -23.60 16 18 N -0.73 -15.20 5.03 -460.84 -2.32 -17.51 16 19 C 0.23 4.67 2.82 44.36 0.12 4.80 16 20 H 0.07 1.78 7.59 -2.39 -0.02 1.77 16 21 C -0.12 -1.29 5.41 30.76 0.17 -1.12 16 22 C -0.11 -0.82 5.89 30.74 0.18 -0.64 16 23 C -0.04 -0.34 6.30 30.03 0.19 -0.15 16 24 C -0.01 -0.26 7.22 24.99 0.18 -0.08 16 25 O -0.18 -3.85 10.65 -0.09 0.00 -3.85 16 26 C -0.05 -1.12 12.10 67.02 0.81 -0.31 16 27 C -0.21 -5.47 10.26 22.06 0.23 -5.25 16 28 C -0.21 -4.81 5.62 -20.07 -0.11 -4.92 16 29 C -0.10 -3.67 5.94 31.68 0.19 -3.48 16 30 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 31 H 0.06 2.46 8.04 -2.39 -0.02 2.44 16 32 H 0.04 1.68 5.41 -2.39 -0.01 1.67 16 33 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.07 2.20 7.92 -2.39 -0.02 2.18 16 35 H 0.41 9.05 8.37 -92.71 -0.78 8.27 16 36 H 0.41 6.08 8.61 -92.71 -0.80 5.29 16 37 H 0.09 0.72 8.10 -2.39 -0.02 0.70 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.63 8.12 -2.38 -0.02 0.62 16 40 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 41 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.23 3.13 8.06 -2.91 -0.02 3.11 16 44 H 0.12 3.82 7.14 -2.91 -0.02 3.80 16 45 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.07 2.52 7.63 -2.39 -0.02 2.50 16 Total: -1.00 -74.88 361.12 1.28 -73.60 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -0.63 Total: 24.79 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: 4.56 Total: -18.89 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -4.28 Total: -98.37 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.06 Total: -27.45 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.70 Total: 46.32 kcal Total: -74.88 1.28 -73.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296108612.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.590 kcal (2) G-P(sol) polarization free energy of solvation -74.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds