Wall clock time and date at job start Tue Mar 31 2020 11:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46888 * 179.97438 * 9 7 2 11 11 C 1.46497 * 119.99834 * 269.99907 * 10 9 7 12 12 C 1.50701 * 109.46920 * 90.00186 * 11 10 9 13 13 C 1.38673 * 120.42036 * 90.00291 * 12 11 10 14 14 C 1.38624 * 118.42216 * 180.02562 * 13 12 11 15 15 C 1.38226 * 119.16266 * 359.97438 * 14 13 12 16 16 N 1.31857 * 120.76164 * 359.97438 * 15 14 13 17 17 C 1.31888 * 121.72509 * 359.70569 * 16 15 14 18 18 C 1.34777 * 119.99995 * 89.99765 * 10 9 7 19 19 O 1.21281 * 119.99934 * 180.02562 * 18 10 9 20 20 C 1.50694 * 120.00055 * 0.02562 * 18 10 9 21 21 C 1.53000 * 109.47445 * 179.97438 * 20 18 10 22 22 C 1.52999 * 109.47390 * 179.97438 * 21 20 18 23 23 H 1.08998 * 110.33162 * 307.24802 * 22 21 20 24 24 C 1.54482 * 110.36892 * 184.99991 * 22 21 20 25 25 C 1.54516 * 104.05965 * 217.18687 * 24 22 21 26 26 C 1.54471 * 104.06334 * 0.02562 * 25 24 22 27 27 O 1.44427 * 110.37067 * 69.62159 * 22 21 20 28 28 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 29 29 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 30 30 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 31 31 H 1.09001 * 109.46973 * 209.99568 * 11 10 9 32 32 H 1.08999 * 109.47469 * 330.00211 * 11 10 9 33 33 H 1.08001 * 120.79139 * 0.02562 * 13 12 11 34 34 H 1.08005 * 120.42303 * 179.97438 * 14 13 12 35 35 H 1.08003 * 119.62091 * 179.97438 * 15 14 13 36 36 H 1.07997 * 119.61728 * 180.31279 * 17 16 15 37 37 H 1.09000 * 109.47555 * 299.99641 * 20 18 10 38 38 H 1.09001 * 109.47775 * 59.99569 * 20 18 10 39 39 H 1.08999 * 109.47170 * 300.00179 * 21 20 18 40 40 H 1.09001 * 109.47132 * 59.99578 * 21 20 18 41 41 H 1.08996 * 110.51565 * 335.83216 * 24 22 21 42 42 H 1.09004 * 110.50861 * 98.54685 * 24 22 21 43 43 H 1.09004 * 110.50698 * 118.64987 * 25 24 22 44 44 H 1.08996 * 110.51136 * 241.21713 * 25 24 22 45 45 H 1.09002 * 110.37704 * 142.80584 * 26 25 24 46 46 H 1.09002 * 110.36921 * 265.03250 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 7 2.2029 -3.6127 -0.0182 11 6 2.6788 -4.1629 -1.2899 12 6 3.9220 -3.4283 -1.7210 13 6 5.1742 -3.8764 -1.3282 14 6 6.2898 -3.1688 -1.7482 15 6 6.1184 -2.0484 -2.5393 16 7 4.9121 -1.6519 -2.8946 17 6 3.8290 -2.3039 -2.5188 18 6 2.6408 -4.1310 1.1463 19 8 3.4292 -5.0525 1.1415 20 6 2.1508 -3.5654 2.4543 21 6 2.7965 -4.3275 3.6133 22 6 2.2995 -3.7528 4.9413 23 1 2.4471 -2.6731 4.9657 24 6 3.0322 -4.4226 6.1249 25 6 1.9444 -4.5531 7.2145 26 6 0.6831 -3.9474 6.5601 27 8 0.9059 -4.0767 5.1392 28 1 -0.4850 0.8401 0.0040 29 1 0.6240 -2.5614 0.8771 30 1 0.6246 -2.5525 -0.9029 31 1 2.9072 -5.2214 -1.1650 32 1 1.9055 -4.0450 -2.0489 33 1 5.2778 -4.7557 -0.7098 34 1 7.2805 -3.4889 -1.4608 35 1 6.9824 -1.4914 -2.8704 36 1 2.8578 -1.9518 -2.8337 37 1 2.4197 -2.5110 2.5178 38 1 1.0671 -3.6680 2.5114 39 1 2.5272 -5.3818 3.5497 40 1 3.8802 -4.2252 3.5565 41 1 3.4041 -5.4058 5.8368 42 1 3.8493 -3.7916 6.4746 43 1 1.7786 -5.6010 7.4650 44 1 2.2249 -3.9887 8.1037 45 1 -0.2044 -4.5059 6.8576 46 1 0.5799 -2.8977 6.8352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299487828.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:14 Heat of formation + Delta-G solvation = -60.432656 kcal Electronic energy + Delta-G solvation = -27175.055329 eV Core-core repulsion = 23450.089141 eV Total energy + Delta-G solvation = -3724.966188 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.91147 -39.42286 -38.70328 -35.24255 -33.41426 -32.75528 -32.04297 -31.91208 -31.11581 -28.52396 -27.49051 -25.91499 -23.87670 -23.12214 -22.75893 -21.90020 -21.25397 -20.72084 -18.25538 -16.84305 -16.58366 -16.43392 -16.29952 -15.73880 -15.62113 -15.36064 -15.20626 -14.93345 -14.34018 -14.18960 -13.72238 -13.35770 -13.15674 -12.74313 -12.65344 -12.57472 -12.45153 -12.16807 -11.76745 -11.71123 -11.65337 -11.33775 -11.31615 -11.25537 -10.86411 -10.81068 -10.64336 -10.59729 -10.44170 -10.15511 -9.75851 -9.64394 -9.39394 -9.06705 -9.00482 -8.59654 -8.42931 -7.76132 -6.16828 -4.23088 1.55404 1.76901 3.24685 3.32625 3.36963 3.43895 3.89564 3.98116 4.34718 4.41298 4.59893 4.72732 4.90839 4.91577 5.08436 5.16891 5.19359 5.27309 5.34837 5.36907 5.43343 5.52153 5.53457 5.59497 5.67808 5.72472 5.75231 5.81486 5.93215 5.95068 6.04399 6.11291 6.12168 6.26226 6.30536 6.45803 6.55201 6.60948 6.74961 6.80116 6.97735 7.17428 7.19455 7.50421 7.77907 8.06411 8.29613 8.45910 8.80951 9.00236 9.45140 10.89852 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010680 B = 0.004450 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.160041 B = 6290.941286 C = 7804.163564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.069 3.931 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.270 1.270 6 H -0.285 1.285 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.236 3.764 10 N -0.593 5.593 11 C 0.163 3.837 12 C -0.140 4.140 13 C -0.059 4.059 14 C -0.188 4.188 15 C 0.089 3.911 16 N -0.491 5.491 17 C 0.138 3.862 18 C 0.520 3.480 19 O -0.578 6.578 20 C -0.132 4.132 21 C -0.093 4.093 22 C 0.073 3.927 23 H 0.071 0.929 24 C -0.151 4.151 25 C -0.155 4.155 26 C 0.043 3.957 27 O -0.366 6.366 28 H 0.265 0.735 29 H 0.042 0.958 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.134 0.866 34 H 0.125 0.875 35 H 0.146 0.854 36 H 0.157 0.843 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.440 -7.901 6.910 11.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.195 1.195 6 H -0.211 1.211 7 C -0.569 4.569 8 H 0.077 0.923 9 C 0.116 3.884 10 N -0.322 5.322 11 C 0.039 3.961 12 C -0.143 4.143 13 C -0.085 4.085 14 C -0.208 4.208 15 C -0.069 4.069 16 N -0.200 5.200 17 C -0.020 4.020 18 C 0.310 3.690 19 O -0.460 6.460 20 C -0.172 4.172 21 C -0.131 4.131 22 C 0.016 3.984 23 H 0.089 0.911 24 C -0.189 4.189 25 C -0.193 4.193 26 C -0.034 4.034 27 O -0.285 6.285 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.151 0.849 34 H 0.143 0.857 35 H 0.163 0.837 36 H 0.174 0.826 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.398 -7.550 6.194 11.158 hybrid contribution 0.659 0.641 0.832 1.240 sum 6.056 -6.909 7.026 11.566 Atomic orbital electron populations 1.69917 1.05925 1.27230 1.49752 1.24877 0.94731 0.99064 0.94758 0.86628 0.80311 0.83337 0.78170 1.20709 1.19497 1.21053 1.21411 0.93388 0.90241 1.51846 0.92294 1.19514 0.87350 0.82656 0.98860 1.48296 1.44890 1.35280 1.03782 1.20101 0.92599 0.96707 0.86670 1.21252 0.96103 0.98251 0.98722 1.21567 0.91879 0.99084 0.95984 1.22014 0.99418 0.98098 1.01237 1.22634 0.95121 0.94124 0.94972 1.67694 0.98900 1.30502 1.22860 1.22721 0.97116 0.89763 0.92357 1.20578 0.80454 0.81989 0.86013 1.90551 1.36480 1.30819 1.88138 1.21573 1.02490 1.01897 0.91203 1.21382 1.00272 1.00372 0.91042 1.23113 0.81322 0.98817 0.95157 0.91107 1.22994 0.98432 1.02125 0.95340 1.22934 0.95715 1.01946 0.98725 1.23351 0.97954 1.00100 0.81979 1.89188 1.26475 1.90274 1.22610 0.92574 0.94017 0.94653 0.90093 0.89923 0.84851 0.85659 0.83691 0.82556 0.88089 0.88712 0.90858 0.90389 0.90496 0.90682 0.90926 0.90863 0.89411 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.20 13.29 55.43 0.74 -23.46 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.53 -13.31 8.76 -34.44 -0.30 -13.61 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.24 5.36 5.01 -5.19 -0.03 5.34 16 10 N -0.59 -11.93 2.44 -176.43 -0.43 -12.36 16 11 C 0.16 2.89 5.60 -5.19 -0.03 2.87 16 12 C -0.14 -2.53 5.48 -104.48 -0.57 -3.11 16 13 C -0.06 -0.99 9.86 -39.28 -0.39 -1.38 16 14 C -0.19 -2.86 10.11 -39.44 -0.40 -3.26 16 15 C 0.09 1.43 11.18 -17.55 -0.20 1.24 16 16 N -0.49 -9.37 10.36 -13.25 -0.14 -9.51 16 17 C 0.14 2.62 10.12 -17.55 -0.18 2.45 16 18 C 0.52 10.41 7.67 -10.99 -0.08 10.32 16 19 O -0.58 -12.09 15.20 5.56 0.08 -12.00 16 20 C -0.13 -2.40 4.19 -27.89 -0.12 -2.52 16 21 C -0.09 -1.44 4.13 -26.73 -0.11 -1.55 16 22 C 0.07 1.01 3.25 -25.95 -0.08 0.93 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 24 C -0.15 -1.65 6.63 -25.16 -0.17 -1.81 16 25 C -0.16 -1.48 7.09 -25.16 -0.18 -1.66 16 26 C 0.04 0.49 7.63 37.93 0.29 0.78 16 27 O -0.37 -5.54 11.13 -35.23 -0.39 -5.93 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.04 1.00 6.44 -51.93 -0.33 0.66 16 30 H 0.04 0.84 7.89 -51.93 -0.41 0.43 16 31 H 0.08 1.37 7.37 -51.93 -0.38 0.99 16 32 H 0.08 1.33 7.84 -51.93 -0.41 0.93 16 33 H 0.13 2.22 7.69 -52.49 -0.40 1.82 16 34 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 35 H 0.15 1.88 8.06 -52.48 -0.42 1.46 16 36 H 0.16 2.99 8.06 -52.49 -0.42 2.57 16 37 H 0.10 1.96 8.00 -51.93 -0.42 1.55 16 38 H 0.09 1.77 7.27 -51.93 -0.38 1.39 16 39 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 40 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 41 H 0.08 0.83 7.87 -51.93 -0.41 0.42 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 380.96 15.07 5.74 5.74 Total: -1.00 -29.70 380.96 -9.38 -39.07 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.32 Total: 5.77 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -2.64 Total: -3.28 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.17 Total: -45.33 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.31 Total: -17.94 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.70 -9.38 -39.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299487828.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.358 kcal (2) G-P(sol) polarization free energy of solvation -29.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds