Wall clock time and date at job start Tue Mar 31 2020 11:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46888 * 179.97438 * 9 7 2 11 11 C 1.46497 * 119.99834 * 269.99907 * 10 9 7 12 12 C 1.50701 * 109.46920 * 90.00186 * 11 10 9 13 13 C 1.38673 * 120.42036 * 90.00291 * 12 11 10 14 14 C 1.38624 * 118.42216 * 180.02562 * 13 12 11 15 15 C 1.38226 * 119.16266 * 359.97438 * 14 13 12 16 16 N 1.31857 * 120.76164 * 359.97438 * 15 14 13 17 17 C 1.31888 * 121.72509 * 359.70569 * 16 15 14 18 18 C 1.34777 * 119.99995 * 89.99765 * 10 9 7 19 19 O 1.21281 * 119.99934 * 180.02562 * 18 10 9 20 20 C 1.50694 * 120.00055 * 0.02562 * 18 10 9 21 21 C 1.53000 * 109.47445 * 179.97438 * 20 18 10 22 22 C 1.52999 * 109.47390 * 179.97438 * 21 20 18 23 23 H 1.08998 * 110.33162 * 307.24802 * 22 21 20 24 24 C 1.54482 * 110.36892 * 184.99991 * 22 21 20 25 25 C 1.54516 * 104.05965 * 217.18687 * 24 22 21 26 26 C 1.54471 * 104.06334 * 0.02562 * 25 24 22 27 27 O 1.44427 * 110.37067 * 69.62159 * 22 21 20 28 28 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 29 29 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 30 30 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 31 31 H 1.09001 * 109.46973 * 209.99568 * 11 10 9 32 32 H 1.08999 * 109.47469 * 330.00211 * 11 10 9 33 33 H 1.08001 * 120.79139 * 0.02562 * 13 12 11 34 34 H 1.08005 * 120.42303 * 179.97438 * 14 13 12 35 35 H 1.08003 * 119.62091 * 179.97438 * 15 14 13 36 36 H 1.07997 * 119.61728 * 180.31279 * 17 16 15 37 37 H 1.09000 * 109.47555 * 299.99641 * 20 18 10 38 38 H 1.09001 * 109.47775 * 59.99569 * 20 18 10 39 39 H 1.08999 * 109.47170 * 300.00179 * 21 20 18 40 40 H 1.09001 * 109.47132 * 59.99578 * 21 20 18 41 41 H 1.08996 * 110.51565 * 335.83216 * 24 22 21 42 42 H 1.09004 * 110.50861 * 98.54685 * 24 22 21 43 43 H 1.09004 * 110.50698 * 118.64987 * 25 24 22 44 44 H 1.08996 * 110.51136 * 241.21713 * 25 24 22 45 45 H 1.09002 * 110.37704 * 142.80584 * 26 25 24 46 46 H 1.09002 * 110.36921 * 265.03250 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 7 2.2029 -3.6127 -0.0182 11 6 2.6788 -4.1629 -1.2899 12 6 3.9220 -3.4283 -1.7210 13 6 5.1742 -3.8764 -1.3282 14 6 6.2898 -3.1688 -1.7482 15 6 6.1184 -2.0484 -2.5393 16 7 4.9121 -1.6519 -2.8946 17 6 3.8290 -2.3039 -2.5188 18 6 2.6408 -4.1310 1.1463 19 8 3.4292 -5.0525 1.1415 20 6 2.1508 -3.5654 2.4543 21 6 2.7965 -4.3275 3.6133 22 6 2.2995 -3.7528 4.9413 23 1 2.4471 -2.6731 4.9657 24 6 3.0322 -4.4226 6.1249 25 6 1.9444 -4.5531 7.2145 26 6 0.6831 -3.9474 6.5601 27 8 0.9059 -4.0767 5.1392 28 1 -0.4850 0.8401 0.0040 29 1 0.6240 -2.5614 0.8771 30 1 0.6246 -2.5525 -0.9029 31 1 2.9072 -5.2214 -1.1650 32 1 1.9055 -4.0450 -2.0489 33 1 5.2778 -4.7557 -0.7098 34 1 7.2805 -3.4889 -1.4608 35 1 6.9824 -1.4914 -2.8704 36 1 2.8578 -1.9518 -2.8337 37 1 2.4197 -2.5110 2.5178 38 1 1.0671 -3.6680 2.5114 39 1 2.5272 -5.3818 3.5497 40 1 3.8802 -4.2252 3.5565 41 1 3.4041 -5.4058 5.8368 42 1 3.8493 -3.7916 6.4746 43 1 1.7786 -5.6010 7.4650 44 1 2.2249 -3.9887 8.1037 45 1 -0.2044 -4.5059 6.8576 46 1 0.5799 -2.8977 6.8352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299487828.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:14 Heat of formation + Delta-G solvation = -76.408762 kcal Electronic energy + Delta-G solvation = -27175.748105 eV Core-core repulsion = 23450.089141 eV Total energy + Delta-G solvation = -3725.658964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34647 -40.59117 -40.06185 -36.89740 -34.95300 -34.40502 -33.45207 -32.92060 -32.47104 -29.72535 -29.30736 -27.31767 -25.24277 -24.67189 -24.31283 -23.09190 -22.33883 -21.80363 -19.86067 -18.69295 -18.06692 -17.87020 -17.41359 -17.05536 -16.97135 -16.72232 -16.43846 -16.40208 -16.01228 -15.58831 -14.78037 -14.58019 -14.55072 -14.37770 -14.11687 -13.92399 -13.75601 -13.64608 -13.48357 -13.19256 -12.93273 -12.74115 -12.68201 -12.54990 -12.40987 -12.29182 -12.03537 -11.84090 -11.75770 -11.67608 -11.44723 -10.85839 -10.68009 -10.64874 -10.51097 -10.39095 -9.86002 -9.44947 -8.19262 -6.29623 0.21849 0.42066 1.35057 1.39819 1.48564 1.78179 2.31743 2.44488 3.01860 3.02194 3.13053 3.60269 3.62537 3.76334 3.87083 3.98165 4.02979 4.06536 4.12190 4.14895 4.19691 4.22269 4.40326 4.45451 4.54467 4.65899 4.69819 4.75844 4.78952 4.82981 4.88389 4.92174 4.94869 4.97995 5.11156 5.12770 5.20760 5.23725 5.26472 5.31134 5.43708 5.68368 5.82534 5.86000 5.99231 6.08231 6.56263 6.83793 7.10794 7.31602 7.43667 8.86640 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010680 B = 0.004450 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.160041 B = 6290.941286 C = 7804.163564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.030 3.970 3 Si 0.939 3.061 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.521 4.521 8 H 0.045 0.955 9 C 0.252 3.748 10 N -0.595 5.595 11 C 0.161 3.839 12 C -0.149 4.149 13 C -0.067 4.067 14 C -0.175 4.175 15 C 0.083 3.917 16 N -0.518 5.518 17 C 0.119 3.881 18 C 0.516 3.484 19 O -0.585 6.585 20 C -0.125 4.125 21 C -0.083 4.083 22 C 0.070 3.930 23 H 0.066 0.934 24 C -0.148 4.148 25 C -0.148 4.148 26 C 0.033 3.967 27 O -0.399 6.399 28 H 0.266 0.734 29 H 0.030 0.970 30 H 0.025 0.975 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.137 0.863 34 H 0.164 0.836 35 H 0.180 0.820 36 H 0.143 0.857 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.282 -8.197 8.125 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.171 4.171 3 Si 0.766 3.234 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.559 4.559 8 H 0.063 0.937 9 C 0.131 3.869 10 N -0.324 5.324 11 C 0.038 3.962 12 C -0.152 4.152 13 C -0.093 4.093 14 C -0.195 4.195 15 C -0.074 4.074 16 N -0.227 5.227 17 C -0.038 4.038 18 C 0.306 3.694 19 O -0.467 6.467 20 C -0.165 4.165 21 C -0.121 4.121 22 C 0.013 3.987 23 H 0.084 0.916 24 C -0.185 4.185 25 C -0.185 4.185 26 C -0.043 4.043 27 O -0.319 6.319 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.154 0.846 34 H 0.181 0.819 35 H 0.197 0.803 36 H 0.161 0.839 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.113 0.887 45 H 0.118 0.882 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.242 -7.857 7.413 13.005 hybrid contribution 0.140 0.693 0.418 0.822 sum 7.382 -7.164 7.831 12.928 Atomic orbital electron populations 1.69986 1.06840 1.27818 1.51001 1.25425 0.95300 1.01452 0.94912 0.85843 0.78738 0.80704 0.78165 1.20056 1.20533 1.20690 1.21443 0.92612 0.91200 1.50687 0.93700 1.19141 0.87320 0.82788 0.97642 1.48250 1.44566 1.34649 1.04937 1.20243 0.93119 0.96983 0.85877 1.21222 0.96686 0.98235 0.99089 1.21729 0.92032 0.99455 0.96100 1.22398 1.00587 0.96923 0.99550 1.23249 0.95048 0.94581 0.94489 1.67664 0.99898 1.31301 1.23838 1.22581 0.96992 0.90608 0.93583 1.20867 0.80263 0.81864 0.86407 1.90533 1.36785 1.31105 1.88291 1.21518 1.02086 1.01274 0.91603 1.21300 1.00184 0.99539 0.91045 1.23115 0.81541 0.98725 0.95316 0.91590 1.22986 0.98991 1.02137 0.94413 1.22926 0.94061 1.02791 0.98769 1.23603 0.99523 1.00909 0.80304 1.89151 1.27123 1.90471 1.25138 0.92489 0.95225 0.95677 0.89200 0.88929 0.84556 0.81862 0.80327 0.83943 0.89580 0.89625 0.91488 0.90061 0.90374 0.89061 0.89988 0.88729 0.88176 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.42 13.29 21.45 0.28 -50.14 16 2 C 0.03 1.56 5.46 84.66 0.46 2.02 16 3 Si 0.94 43.28 29.54 68.60 2.03 45.31 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.52 -26.54 8.76 25.60 0.22 -26.32 16 8 H 0.04 2.40 7.60 -2.91 -0.02 2.38 16 9 C 0.25 11.75 5.01 85.63 0.43 12.18 16 10 N -0.59 -24.26 2.44 -830.50 -2.03 -26.29 16 11 C 0.16 5.74 5.60 85.63 0.48 6.22 16 12 C -0.15 -5.37 5.48 -19.77 -0.11 -5.48 16 13 C -0.07 -2.16 9.86 22.47 0.22 -1.94 16 14 C -0.18 -4.86 10.11 22.36 0.23 -4.64 16 15 C 0.08 2.51 11.18 84.69 0.95 3.45 16 16 N -0.52 -19.45 10.36 -195.84 -2.03 -21.48 16 17 C 0.12 4.59 10.12 84.67 0.86 5.44 16 18 C 0.52 20.77 7.67 87.65 0.67 21.45 16 19 O -0.58 -24.17 15.20 -3.03 -0.05 -24.22 16 20 C -0.13 -4.64 4.19 29.85 0.13 -4.52 16 21 C -0.08 -2.56 4.13 30.59 0.13 -2.43 16 22 C 0.07 1.90 3.25 31.10 0.10 2.00 16 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 24 C -0.15 -2.92 6.63 31.61 0.21 -2.71 16 25 C -0.15 -2.45 7.09 31.61 0.22 -2.23 16 26 C 0.03 0.70 7.63 72.48 0.55 1.25 16 27 O -0.40 -11.96 11.13 -148.98 -1.66 -13.62 16 28 H 0.27 14.01 8.31 -92.70 -0.77 13.24 16 29 H 0.03 1.46 6.44 -2.39 -0.02 1.45 16 30 H 0.03 1.23 7.89 -2.39 -0.02 1.21 16 31 H 0.09 3.02 7.37 -2.39 -0.02 3.01 16 32 H 0.09 3.05 7.84 -2.39 -0.02 3.03 16 33 H 0.14 4.33 7.69 -2.91 -0.02 4.31 16 34 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 35 H 0.18 4.03 8.06 -2.91 -0.02 4.00 16 36 H 0.14 5.70 8.06 -2.91 -0.02 5.67 16 37 H 0.09 3.44 8.00 -2.39 -0.02 3.42 16 38 H 0.09 3.32 7.27 -2.39 -0.02 3.30 16 39 H 0.07 2.14 8.10 -2.39 -0.02 2.12 16 40 H 0.08 2.43 8.10 -2.39 -0.02 2.41 16 41 H 0.08 1.53 7.87 -2.39 -0.02 1.51 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.10 1.80 8.14 -2.39 -0.02 1.79 16 46 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -63.27 380.96 3.26 -60.01 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 0.95 Total: 26.68 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 5.75 Total: 3.76 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -3.77 Total: -97.91 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -1.70 Total: -37.84 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -63.27 3.26 -60.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299487828.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.400 kcal (2) G-P(sol) polarization free energy of solvation -63.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds