Wall clock time and date at job start Tue Mar 31 2020 12:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 C 1.50707 * 109.47230 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99923 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99810 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99637 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.46906 * 179.97438 * 11 10 8 13 13 O 1.21283 * 120.00204 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99813 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00255 * 0.02562 * 14 12 11 16 16 C 1.46496 * 119.99747 * 179.97438 * 14 12 11 17 17 C 1.50703 * 109.46978 * 90.00522 * 16 14 12 18 18 H 1.08001 * 120.00181 * 359.97438 * 17 16 14 19 19 C 1.37877 * 119.99982 * 180.02562 * 17 16 14 20 20 N 1.31509 * 120.00382 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99886 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47198 * 59.99550 * 21 19 17 23 23 H 1.48501 * 109.47054 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46966 * 299.99741 * 21 19 17 25 25 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 26 26 C 1.38234 * 120.00033 * 0.49775 * 25 5 4 27 27 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 28 28 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 29 29 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 30 30 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 33 33 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 34 34 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 35 35 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 36 36 H 0.97001 * 120.00324 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.47064 * 299.99522 * 11 10 8 38 38 H 1.08998 * 109.47074 * 59.99410 * 11 10 8 39 39 H 1.08997 * 109.47243 * 89.99715 * 15 14 12 40 40 H 1.08998 * 109.47049 * 210.00206 * 15 14 12 41 41 H 1.09005 * 109.46335 * 329.99699 * 15 14 12 42 42 H 1.09010 * 109.47575 * 209.99900 * 16 14 12 43 43 H 1.09004 * 109.47808 * 330.00439 * 16 14 12 44 44 H 0.97001 * 120.00565 * 180.02562 * 20 19 17 45 45 H 1.07999 * 119.99934 * 180.25938 * 25 5 4 46 46 H 1.08001 * 120.00294 * 179.76453 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 6 7.8012 -0.0021 1.4247 9 8 8.4036 -0.0002 0.3721 10 7 8.4795 -0.0047 2.5894 11 6 9.9445 -0.0036 2.5838 12 6 10.4522 -0.0064 4.0026 13 8 9.6676 -0.0086 4.9275 14 7 11.7782 -0.0064 4.2439 15 6 12.7260 -0.0031 3.1268 16 6 12.2717 -0.0085 5.6232 17 6 12.4415 -1.4301 6.0938 18 1 12.2049 -2.2500 5.4317 19 6 12.8977 -1.6840 7.3698 20 7 13.1853 -0.6858 8.1762 21 14 13.1074 -3.4462 7.9533 22 1 14.0825 -4.1448 7.0780 23 1 13.6078 -3.4484 9.3515 24 1 11.7991 -4.1462 7.8942 25 6 3.5805 -1.1972 0.0010 26 6 2.1982 -1.1972 0.0009 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6582 2.1324 -0.0004 31 1 4.1205 2.1325 0.0001 32 1 6.1400 -0.8891 -0.5270 33 1 6.1401 0.8909 -0.5236 34 1 5.9328 0.8863 1.9473 35 1 5.9327 -0.8937 1.9440 36 1 7.9977 -0.0066 3.4313 37 1 10.3066 -0.8919 2.0662 38 1 10.3052 0.8880 2.0709 39 1 12.9606 1.0253 2.8523 40 1 13.6399 -0.5174 3.4242 41 1 12.2825 -0.5151 2.2727 42 1 13.2320 0.5055 5.6664 43 1 11.5560 0.5040 6.2661 44 1 13.5066 -0.8644 9.0739 45 1 4.1205 -2.1325 0.0013 46 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299506568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:51 Heat of formation + Delta-G solvation = -64.306359 kcal Electronic energy + Delta-G solvation = -25034.390880 eV Core-core repulsion = 21309.256716 eV Total energy + Delta-G solvation = -3725.134164 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.12183 -39.58505 -38.74424 -35.14752 -34.83719 -34.19834 -32.67133 -31.57480 -31.17640 -29.01283 -27.65910 -26.64534 -25.59638 -23.75701 -22.97693 -22.53740 -20.88876 -20.28559 -18.81386 -17.41662 -16.64318 -16.32318 -16.18582 -16.15244 -15.56447 -15.53370 -15.20152 -14.97771 -14.76330 -14.27529 -14.06638 -13.70832 -13.56792 -13.44311 -12.98461 -12.83495 -12.65115 -12.50836 -12.48693 -12.23428 -11.95144 -11.88499 -11.79864 -11.43561 -11.26834 -11.25075 -11.03326 -10.95938 -10.62627 -10.22477 -9.93594 -9.72036 -9.17642 -9.15598 -9.07234 -8.73209 -8.48527 -7.78498 -6.09673 -4.14983 1.05274 1.15253 2.62941 3.07227 3.20360 3.28988 3.33365 3.37064 3.49605 3.92050 4.40190 4.46375 4.52239 4.64062 4.75785 4.83793 4.84110 4.92977 5.06965 5.09331 5.22638 5.25005 5.25997 5.38785 5.39975 5.45973 5.49101 5.52983 5.63141 5.66452 5.80393 5.85875 5.88358 5.97480 6.16414 6.16652 6.32911 6.36809 6.41182 6.76342 6.93904 7.33985 7.40596 7.56137 7.85514 8.15760 8.17146 8.29461 8.76503 8.92748 9.50144 10.98383 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020418 B = 0.001963 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.031079 B =14257.132210 C =14941.551261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.120 4.120 4 C -0.112 4.112 5 C -0.086 4.086 6 C -0.064 4.064 7 C -0.134 4.134 8 C 0.514 3.486 9 O -0.549 6.549 10 N -0.715 5.715 11 C 0.099 3.901 12 C 0.498 3.502 13 O -0.541 6.541 14 N -0.595 5.595 15 C 0.078 3.922 16 C 0.245 3.755 17 C -0.530 4.530 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.112 4.112 26 C -0.119 4.119 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.413 0.587 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.049 0.951 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.035 0.965 43 H 0.045 0.955 44 H 0.265 0.735 45 H 0.123 0.877 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.421 2.920 -17.857 26.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.138 4.138 4 C -0.130 4.130 5 C -0.086 4.086 6 C -0.102 4.102 7 C -0.174 4.174 8 C 0.300 3.700 9 O -0.427 6.427 10 N -0.369 5.369 11 C -0.028 4.028 12 C 0.284 3.716 13 O -0.420 6.420 14 N -0.327 5.327 15 C -0.066 4.066 16 C 0.126 3.874 17 C -0.569 4.569 18 H 0.075 0.925 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.202 1.202 25 C -0.130 4.130 26 C -0.137 4.137 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.251 0.749 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.141 0.859 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.283 2.970 -17.889 26.470 hybrid contribution 0.131 -1.003 0.839 1.314 sum -19.152 1.967 -17.050 25.717 Atomic orbital electron populations 1.20788 0.91342 1.02752 1.02216 1.19932 0.96033 0.93305 1.00109 1.21025 0.94195 0.97489 1.01043 1.21078 0.94111 0.97720 1.00078 1.19915 0.95580 0.93221 0.99898 1.20324 0.89887 1.04551 0.95391 1.21640 0.91521 1.05052 0.99156 1.20656 0.90168 0.75808 0.83341 1.90690 1.70784 1.50147 1.31066 1.45816 1.06554 1.74777 1.09791 1.21168 0.81478 1.03933 0.96232 1.20203 0.83443 0.78003 0.89983 1.90658 1.54991 1.50820 1.45494 1.48118 1.04403 1.70461 1.09699 1.21732 0.94736 1.00863 0.89226 1.19350 0.95098 0.97677 0.75290 1.21376 1.44565 0.92162 0.98755 0.92458 1.24937 0.95231 0.97536 0.96357 1.69915 1.44709 1.30879 1.07749 0.86538 0.78528 0.84532 0.77703 1.20213 1.21131 1.20168 1.21088 0.94121 0.97752 1.00013 1.21031 0.94198 0.97502 1.00999 0.91296 0.91591 0.91597 0.86184 0.85958 0.90111 0.90126 0.88598 0.88560 0.74936 0.88918 0.89055 0.93286 0.90364 0.92166 0.94712 0.93694 0.92581 0.85938 0.86173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.01 36.01 0.36 -0.29 16 2 C -0.09 -0.75 5.88 -104.62 -0.62 -1.37 16 3 C -0.12 -0.97 9.70 -39.58 -0.38 -1.35 16 4 C -0.11 -0.96 9.70 -39.58 -0.38 -1.35 16 5 C -0.09 -0.78 5.13 -104.63 -0.54 -1.32 16 6 C -0.06 -0.60 4.63 -27.89 -0.13 -0.73 16 7 C -0.13 -1.29 5.68 -27.88 -0.16 -1.44 16 8 C 0.51 6.76 7.83 -10.98 -0.09 6.67 16 9 O -0.55 -8.79 15.98 5.56 0.09 -8.70 16 10 N -0.71 -10.07 5.53 -61.47 -0.34 -10.41 16 11 C 0.10 1.51 4.71 -5.19 -0.02 1.49 16 12 C 0.50 9.87 7.74 -10.99 -0.09 9.78 16 13 O -0.54 -12.68 15.25 5.55 0.08 -12.59 16 14 N -0.60 -12.21 2.86 -182.95 -0.52 -12.73 16 15 C 0.08 1.20 10.24 59.85 0.61 1.81 16 16 C 0.24 6.25 5.16 -5.19 -0.03 6.23 16 17 C -0.53 -14.77 9.39 -34.44 -0.32 -15.09 16 18 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 21 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C -0.11 -0.98 9.70 -39.58 -0.38 -1.36 16 26 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 29 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 30 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 31 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 33 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.41 5.77 7.44 -40.82 -0.30 5.46 16 37 H 0.09 1.35 7.40 -51.93 -0.38 0.97 16 38 H 0.09 1.27 8.11 -51.93 -0.42 0.85 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 41 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 42 H 0.03 0.90 8.07 -51.92 -0.42 0.48 16 43 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 46 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -33.86 390.56 -9.00 -42.87 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.27 Total: 2.58 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -2.65 Total: 1.97 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -0.13 Total: -48.58 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: 0.17 Total: -21.30 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.86 -9.00 -42.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299506568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.440 kcal (2) G-P(sol) polarization free energy of solvation -33.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds