Wall clock time and date at job start Tue Mar 31 2020 12:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 C 1.50707 * 109.47230 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99923 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99810 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99637 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.46906 * 179.97438 * 11 10 8 13 13 O 1.21283 * 120.00204 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99813 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00255 * 0.02562 * 14 12 11 16 16 C 1.46496 * 119.99747 * 179.97438 * 14 12 11 17 17 C 1.50703 * 109.46978 * 90.00522 * 16 14 12 18 18 H 1.08001 * 120.00181 * 359.97438 * 17 16 14 19 19 C 1.37877 * 119.99982 * 180.02562 * 17 16 14 20 20 N 1.31509 * 120.00382 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99886 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47198 * 59.99550 * 21 19 17 23 23 H 1.48501 * 109.47054 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46966 * 299.99741 * 21 19 17 25 25 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 26 26 C 1.38234 * 120.00033 * 0.49775 * 25 5 4 27 27 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 28 28 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 29 29 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 30 30 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 33 33 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 34 34 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 35 35 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 36 36 H 0.97001 * 120.00324 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.47064 * 299.99522 * 11 10 8 38 38 H 1.08998 * 109.47074 * 59.99410 * 11 10 8 39 39 H 1.08997 * 109.47243 * 89.99715 * 15 14 12 40 40 H 1.08998 * 109.47049 * 210.00206 * 15 14 12 41 41 H 1.09005 * 109.46335 * 329.99699 * 15 14 12 42 42 H 1.09010 * 109.47575 * 209.99900 * 16 14 12 43 43 H 1.09004 * 109.47808 * 330.00439 * 16 14 12 44 44 H 0.97001 * 120.00565 * 180.02562 * 20 19 17 45 45 H 1.07999 * 119.99934 * 180.25938 * 25 5 4 46 46 H 1.08001 * 120.00294 * 179.76453 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 6 7.8012 -0.0021 1.4247 9 8 8.4036 -0.0002 0.3721 10 7 8.4795 -0.0047 2.5894 11 6 9.9445 -0.0036 2.5838 12 6 10.4522 -0.0064 4.0026 13 8 9.6676 -0.0086 4.9275 14 7 11.7782 -0.0064 4.2439 15 6 12.7260 -0.0031 3.1268 16 6 12.2717 -0.0085 5.6232 17 6 12.4415 -1.4301 6.0938 18 1 12.2049 -2.2500 5.4317 19 6 12.8977 -1.6840 7.3698 20 7 13.1853 -0.6858 8.1762 21 14 13.1074 -3.4462 7.9533 22 1 14.0825 -4.1448 7.0780 23 1 13.6078 -3.4484 9.3515 24 1 11.7991 -4.1462 7.8942 25 6 3.5805 -1.1972 0.0010 26 6 2.1982 -1.1972 0.0009 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6582 2.1324 -0.0004 31 1 4.1205 2.1325 0.0001 32 1 6.1400 -0.8891 -0.5270 33 1 6.1401 0.8909 -0.5236 34 1 5.9328 0.8863 1.9473 35 1 5.9327 -0.8937 1.9440 36 1 7.9977 -0.0066 3.4313 37 1 10.3066 -0.8919 2.0662 38 1 10.3052 0.8880 2.0709 39 1 12.9606 1.0253 2.8523 40 1 13.6399 -0.5174 3.4242 41 1 12.2825 -0.5151 2.2727 42 1 13.2320 0.5055 5.6664 43 1 11.5560 0.5040 6.2661 44 1 13.5066 -0.8644 9.0739 45 1 4.1205 -2.1325 0.0013 46 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299506568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:50 Heat of formation + Delta-G solvation = -85.003750 kcal Electronic energy + Delta-G solvation = -25035.288386 eV Core-core repulsion = 21309.256716 eV Total energy + Delta-G solvation = -3726.031670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.27516 -40.49216 -39.97965 -36.77603 -35.66211 -35.36656 -34.72841 -32.28970 -31.77222 -30.57014 -28.93619 -27.64824 -27.10500 -24.93242 -24.03406 -23.57716 -21.63590 -21.24916 -20.31280 -18.72759 -18.56443 -17.66784 -17.22921 -17.15361 -16.69345 -16.57585 -16.55541 -15.99165 -15.89242 -15.70098 -14.79997 -14.73087 -14.56170 -14.27529 -14.13028 -14.02180 -13.82546 -13.62379 -13.49008 -13.38628 -13.31777 -13.13762 -12.98079 -12.79924 -12.54666 -12.42619 -12.21183 -12.10758 -11.88581 -11.74482 -11.68158 -11.02781 -10.80756 -10.64875 -10.22471 -9.78946 -9.50416 -9.35049 -8.23616 -6.38337 0.43016 0.53878 1.37265 1.40716 1.47987 1.57327 1.66971 1.89586 2.35852 2.52063 2.87291 3.06391 3.51102 3.67767 3.92413 4.02687 4.11897 4.17915 4.20504 4.22728 4.28678 4.38673 4.44557 4.52265 4.63210 4.68588 4.70206 4.84444 4.85257 4.94259 4.96385 4.97676 4.99448 5.15320 5.19955 5.25518 5.27884 5.35609 5.51350 5.55709 5.74868 5.76908 5.77658 6.03363 6.17192 6.46291 6.60533 6.71352 7.14985 7.20178 7.35778 8.83286 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020418 B = 0.001963 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.031079 B =14257.132210 C =14941.551261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.102 4.102 3 C -0.129 4.129 4 C -0.122 4.122 5 C -0.097 4.097 6 C -0.056 4.056 7 C -0.126 4.126 8 C 0.517 3.483 9 O -0.577 6.577 10 N -0.718 5.718 11 C 0.114 3.886 12 C 0.493 3.507 13 O -0.586 6.586 14 N -0.603 5.603 15 C 0.073 3.927 16 C 0.258 3.742 17 C -0.546 4.546 18 H 0.054 0.946 19 C 0.009 3.991 20 N -0.926 5.926 21 Si 0.967 3.033 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.277 1.277 25 C -0.123 4.123 26 C -0.130 4.130 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.414 0.586 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.027 0.973 43 H 0.003 0.997 44 H 0.268 0.732 45 H 0.130 0.870 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.306 2.119 -19.146 27.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.102 4.102 3 C -0.147 4.147 4 C -0.139 4.139 5 C -0.097 4.097 6 C -0.094 4.094 7 C -0.165 4.165 8 C 0.305 3.695 9 O -0.457 6.457 10 N -0.373 5.373 11 C -0.013 4.013 12 C 0.281 3.719 13 O -0.467 6.467 14 N -0.334 5.334 15 C -0.069 4.069 16 C 0.137 3.863 17 C -0.584 4.584 18 H 0.072 0.928 19 C -0.191 4.191 20 N -0.566 5.566 21 Si 0.791 3.209 22 H -0.186 1.186 23 H -0.204 1.204 24 H -0.202 1.202 25 C -0.141 4.141 26 C -0.148 4.148 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.251 0.749 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.045 0.955 43 H 0.021 0.979 44 H 0.076 0.924 45 H 0.148 0.852 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.158 2.174 -19.223 27.939 hybrid contribution 0.375 -0.702 1.208 1.447 sum -19.783 1.472 -18.016 26.797 Atomic orbital electron populations 1.20827 0.89773 1.03477 1.02918 1.20277 0.97368 0.93214 0.99347 1.21292 0.94207 0.98371 1.00835 1.21275 0.94608 0.97995 1.00068 1.19910 0.95202 0.93685 1.00914 1.20216 0.90299 1.03857 0.95012 1.21657 0.88761 1.06409 0.99711 1.21185 0.91356 0.74558 0.82370 1.90679 1.71630 1.51471 1.31882 1.45905 1.06092 1.74999 1.10256 1.21057 0.82309 1.05403 0.92574 1.20963 0.82749 0.76625 0.91563 1.90630 1.56048 1.52615 1.47403 1.48108 1.05772 1.70444 1.09050 1.22016 0.93618 1.02995 0.88239 1.18827 0.93494 0.96164 0.77801 1.21667 1.44553 0.93012 0.99179 0.92763 1.25841 0.94798 1.01917 0.96502 1.70032 1.45346 1.33080 1.08130 0.85479 0.78568 0.79236 0.77598 1.18636 1.20395 1.20244 1.21273 0.94633 0.98017 1.00143 1.21288 0.94196 0.98391 1.00886 0.90519 0.90929 0.90860 0.84631 0.85060 0.90904 0.90732 0.87037 0.87248 0.74852 0.87615 0.87071 0.90673 0.91019 0.89031 0.95495 0.97865 0.92356 0.85230 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 71.24 0.71 -0.36 16 2 C -0.10 -1.48 5.88 -19.86 -0.12 -1.60 16 3 C -0.13 -1.91 9.70 22.27 0.22 -1.70 16 4 C -0.12 -1.95 9.70 22.27 0.22 -1.74 16 5 C -0.10 -1.67 5.13 -19.87 -0.10 -1.77 16 6 C -0.06 -1.01 4.63 29.84 0.14 -0.87 16 7 C -0.13 -2.24 5.68 29.85 0.17 -2.07 16 8 C 0.52 12.87 7.83 87.66 0.69 13.56 16 9 O -0.58 -17.66 15.98 -3.03 -0.05 -17.71 16 10 N -0.72 -19.35 5.53 -466.78 -2.58 -21.93 16 11 C 0.11 3.28 4.71 85.63 0.40 3.68 16 12 C 0.49 19.44 7.74 87.66 0.68 20.12 16 13 O -0.59 -28.05 15.25 -3.04 -0.05 -28.09 16 14 N -0.60 -24.65 2.86 -851.12 -2.43 -27.08 16 15 C 0.07 2.11 10.24 127.77 1.31 3.42 16 16 C 0.26 13.58 5.16 85.63 0.44 14.02 16 17 C -0.55 -30.84 9.39 25.60 0.24 -30.60 16 18 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 19 C 0.01 0.50 5.46 84.66 0.46 0.96 16 20 N -0.93 -55.17 13.29 21.45 0.28 -54.88 16 21 Si 0.97 44.24 29.54 68.60 2.03 46.26 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 C -0.12 -2.02 9.70 22.27 0.22 -1.80 16 26 C -0.13 -1.96 9.70 22.27 0.22 -1.74 16 27 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 29 H 0.07 0.58 8.09 -2.39 -0.02 0.56 16 30 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 31 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 32 H 0.07 1.41 8.04 -2.39 -0.02 1.39 16 33 H 0.07 1.42 8.04 -2.39 -0.02 1.40 16 34 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.41 11.29 7.44 -92.71 -0.69 10.60 16 37 H 0.11 2.82 7.40 -2.39 -0.02 2.80 16 38 H 0.11 2.81 8.11 -2.39 -0.02 2.79 16 39 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 41 H 0.09 2.07 6.44 -2.38 -0.02 2.05 16 42 H 0.03 1.44 8.07 -2.38 -0.02 1.42 16 43 H 0.00 0.19 7.42 -2.38 -0.02 0.18 16 44 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 45 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 46 H 0.13 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -74.11 390.56 3.37 -70.74 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.28 Total: 21.18 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 5.89 Total: 11.52 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -4.73 Total: -103.90 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -0.09 Total: -45.80 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -74.11 3.37 -70.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299506568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.265 kcal (2) G-P(sol) polarization free energy of solvation -74.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds