Wall clock time and date at job start Tue Mar 31 2020 11:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86790 * 120.00156 * 2 1 4 4 H 1.48498 * 109.47300 * 240.00149 * 3 2 1 5 5 H 1.48496 * 109.47216 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47256 * 120.00276 * 3 2 1 7 7 C 1.37881 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99682 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99855 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.46499 * 119.99537 * 270.00004 * 10 9 7 12 12 C 1.50697 * 109.46949 * 269.99553 * 11 10 9 13 13 C 1.38680 * 120.42160 * 269.72067 * 12 11 10 14 14 C 1.38623 * 118.42241 * 179.78241 * 13 12 11 15 15 C 1.38233 * 119.16032 * 0.51432 * 14 13 12 16 16 N 1.31854 * 120.76370 * 359.72928 * 15 14 13 17 17 C 1.31888 * 121.72386 * 359.97438 * 16 15 14 18 18 C 1.34777 * 120.00264 * 89.99354 * 10 9 7 19 19 O 1.21283 * 119.99750 * 180.02562 * 18 10 9 20 20 C 1.50702 * 119.99928 * 0.28128 * 18 10 9 21 21 C 1.52996 * 109.47159 * 179.72352 * 20 18 10 22 22 O 1.42903 * 110.01739 * 64.29379 * 21 20 18 23 23 C 1.54272 * 110.03107 * 302.90470 * 21 20 18 24 24 C 1.54959 * 104.16036 * 217.13431 * 23 21 20 25 25 C 1.54890 * 102.77681 * 37.89129 * 24 23 21 26 26 C 1.53868 * 110.03243 * 185.69022 * 21 20 18 27 27 H 0.96999 * 119.99754 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47456 * 60.00299 * 9 7 2 29 29 H 1.09001 * 109.47250 * 299.99743 * 9 7 2 30 30 H 1.09001 * 109.47567 * 29.99407 * 11 10 9 31 31 H 1.09005 * 109.47076 * 149.99913 * 11 10 9 32 32 H 1.08001 * 120.78897 * 0.02614 * 13 12 11 33 33 H 1.08000 * 120.41749 * 180.22294 * 14 13 12 34 34 H 1.07994 * 119.61267 * 179.74648 * 15 14 13 35 35 H 1.08001 * 119.61449 * 180.02562 * 17 16 15 36 36 H 1.09004 * 109.46965 * 299.72211 * 20 18 10 37 37 H 1.08994 * 109.46990 * 59.72065 * 20 18 10 38 38 H 0.96695 * 114.00196 * 300.70282 * 22 21 20 39 39 H 1.08997 * 110.48774 * 335.78711 * 23 21 20 40 40 H 1.09006 * 110.48346 * 98.42818 * 23 21 20 41 41 H 1.08992 * 110.72197 * 279.57464 * 24 23 21 42 42 H 1.09003 * 110.76430 * 156.22291 * 24 23 21 43 43 H 1.09003 * 110.48788 * 203.40171 * 25 24 23 44 44 H 1.09002 * 110.48883 * 80.75761 * 25 24 23 45 45 H 1.09000 * 110.03300 * 238.56425 * 26 21 20 46 46 H 1.08997 * 110.03230 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6128 -0.0005 11 6 2.6789 -4.1695 -1.2693 12 6 1.7621 -5.2836 -1.7043 13 6 2.0113 -6.5908 -1.3139 14 6 1.1386 -7.5826 -1.7339 15 6 0.0627 -7.2396 -2.5312 16 7 -0.1404 -5.9865 -2.8874 17 6 0.6657 -5.0165 -2.5016 18 6 2.6410 -4.1250 1.1666 19 8 3.4294 -5.0465 1.1665 20 6 2.1466 -3.5563 2.4718 21 6 2.7886 -4.3156 3.6346 22 8 4.2023 -4.1075 3.6337 23 6 2.4761 -5.8219 3.5188 24 6 2.2703 -6.2802 4.9847 25 6 1.5288 -5.0772 5.6188 26 6 2.1869 -3.8422 4.9693 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 2.6866 -3.3878 -2.0290 31 1 3.6884 -4.5595 -1.1390 32 1 2.8627 -6.8299 -0.6940 33 1 1.2999 -8.6109 -1.4458 34 1 -0.6194 -8.0070 -2.8660 35 1 0.4668 -4.0017 -2.8131 36 1 2.4157 -2.5018 2.5338 37 1 1.0628 -3.6585 2.5253 38 1 4.6419 -4.3961 2.8222 39 1 1.5669 -5.9794 2.9387 40 1 3.3147 -6.3518 3.0668 41 1 3.2294 -6.4451 5.4755 42 1 1.6545 -7.1787 5.0258 43 1 1.6761 -5.0644 6.6987 44 1 0.4663 -5.1140 5.3782 45 1 2.9734 -3.4545 5.6168 46 1 1.4379 -3.0712 4.7887 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304239871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:06 Heat of formation + Delta-G solvation = -69.277464 kcal Electronic energy + Delta-G solvation = -27782.212232 eV Core-core repulsion = 24056.862505 eV Total energy + Delta-G solvation = -3725.349727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.25359 -39.65730 -37.96839 -35.33208 -34.41322 -33.15726 -32.20602 -31.50324 -30.24935 -28.56520 -27.61427 -26.46201 -24.76478 -23.46012 -22.84976 -21.87190 -20.78035 -19.58555 -18.55256 -17.01180 -16.71818 -16.46068 -16.28820 -15.87998 -15.63599 -15.20656 -15.02790 -14.84967 -14.37929 -14.20102 -13.64474 -13.31351 -13.22225 -12.85004 -12.80716 -12.53590 -12.32940 -12.14674 -11.89173 -11.70462 -11.56632 -11.23115 -11.09885 -11.03522 -10.98171 -10.89504 -10.72359 -10.47036 -10.32555 -10.27926 -9.90799 -9.63498 -9.45034 -9.27386 -9.19687 -8.77161 -8.60988 -7.90548 -6.25361 -4.33797 1.26305 1.48655 3.20883 3.21439 3.26446 3.30492 3.71409 4.15101 4.28380 4.51690 4.63395 4.79375 4.86016 4.98750 5.07469 5.11186 5.12530 5.18801 5.25407 5.35882 5.37304 5.59306 5.63042 5.69960 5.78697 5.81340 5.85317 5.99834 6.01772 6.03501 6.11113 6.15339 6.20171 6.30872 6.33927 6.41340 6.46638 6.54386 6.61862 6.63795 6.89831 7.07289 7.36717 7.68120 7.95593 8.09333 8.15281 8.20924 8.68426 8.85164 9.34860 10.81293 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007008 B = 0.006759 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3994.434185 B = 4141.894207 C = 7244.873856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.238 3.762 10 N -0.587 5.587 11 C 0.160 3.840 12 C -0.145 4.145 13 C -0.056 4.056 14 C -0.182 4.182 15 C 0.089 3.911 16 N -0.489 5.489 17 C 0.114 3.886 18 C 0.523 3.477 19 O -0.578 6.578 20 C -0.161 4.161 21 C 0.150 3.850 22 O -0.564 6.564 23 C -0.134 4.134 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.115 4.115 27 H 0.267 0.733 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.150 0.850 35 H 0.157 0.843 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.382 0.618 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.924 -11.832 3.056 12.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.118 3.882 10 N -0.316 5.316 11 C 0.036 3.964 12 C -0.148 4.148 13 C -0.082 4.082 14 C -0.202 4.202 15 C -0.068 4.068 16 N -0.198 5.198 17 C -0.043 4.043 18 C 0.312 3.688 19 O -0.461 6.461 20 C -0.201 4.201 21 C 0.108 3.892 22 O -0.373 6.373 23 C -0.172 4.172 24 C -0.163 4.163 25 C -0.161 4.161 26 C -0.153 4.153 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.167 0.833 35 H 0.175 0.825 36 H 0.129 0.871 37 H 0.113 0.887 38 H 0.233 0.767 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.289 -11.689 3.088 12.158 hybrid contribution 0.999 0.695 -0.148 1.226 sum 2.288 -10.993 2.940 11.608 Atomic orbital electron populations 1.69910 1.06013 1.27581 1.49166 1.24934 0.94844 0.99315 0.94542 0.86566 0.79578 0.82521 0.78915 1.20080 1.21115 1.20005 1.21414 0.93571 0.90335 1.52744 0.92043 1.19476 0.87446 0.82473 0.98791 1.48275 1.45317 1.34275 1.03747 1.20139 0.95868 0.93304 0.87128 1.21429 0.98640 0.95979 0.98764 1.21652 0.98591 0.92138 0.95826 1.22105 0.96966 1.00419 1.00665 1.22699 0.95785 0.93551 0.94740 1.67708 1.28964 1.00815 1.22288 1.22815 0.89641 0.98562 0.93265 1.20504 0.80547 0.81839 0.85865 1.90496 1.37036 1.30700 1.87889 1.22465 1.02252 1.03284 0.92079 1.21499 0.81310 0.93113 0.93239 1.86382 1.19254 1.86877 1.44752 1.22990 1.02338 0.96025 0.95854 1.22521 1.00040 0.97326 0.96409 1.22352 0.99495 0.94738 0.99478 1.22166 0.99910 0.98026 0.95152 0.92346 0.94571 0.94400 0.89114 0.89742 0.84451 0.85293 0.83307 0.82548 0.87102 0.88658 0.76711 0.91834 0.90079 0.91585 0.92090 0.91761 0.91629 0.90542 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.74 13.29 55.43 0.74 -23.00 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -13.38 9.30 -34.44 -0.32 -13.70 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.24 5.29 4.97 -5.19 -0.03 5.27 16 10 N -0.59 -11.24 2.44 -176.43 -0.43 -11.67 16 11 C 0.16 2.69 5.56 -5.20 -0.03 2.66 16 12 C -0.14 -2.30 5.48 -104.48 -0.57 -2.87 16 13 C -0.06 -0.81 9.86 -39.28 -0.39 -1.19 16 14 C -0.18 -2.31 10.11 -39.44 -0.40 -2.71 16 15 C 0.09 1.20 11.18 -17.54 -0.20 1.00 16 16 N -0.49 -7.87 10.36 -13.25 -0.14 -8.01 16 17 C 0.11 1.86 10.86 -17.55 -0.19 1.67 16 18 C 0.52 9.68 7.14 -10.98 -0.08 9.60 16 19 O -0.58 -10.61 11.75 -9.16 -0.11 -10.72 16 20 C -0.16 -2.82 3.18 -27.88 -0.09 -2.90 16 21 C 0.15 2.36 0.98 -89.50 -0.09 2.27 16 22 O -0.56 -9.67 12.89 -49.94 -0.64 -10.32 16 23 C -0.13 -1.96 4.65 -25.03 -0.12 -2.08 16 24 C -0.13 -1.55 6.91 -24.70 -0.17 -1.72 16 25 C -0.12 -1.46 6.83 -25.07 -0.17 -1.63 16 26 C -0.12 -1.61 6.27 -25.61 -0.16 -1.77 16 27 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.04 0.89 6.43 -51.93 -0.33 0.55 16 30 H 0.09 1.51 8.02 -51.93 -0.42 1.09 16 31 H 0.08 1.38 7.37 -51.93 -0.38 1.00 16 32 H 0.14 1.98 7.71 -52.49 -0.40 1.58 16 33 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.16 2.50 8.06 -52.49 -0.42 2.08 16 36 H 0.11 2.15 8.03 -51.93 -0.42 1.73 16 37 H 0.10 1.63 7.40 -51.93 -0.38 1.25 16 38 H 0.38 6.42 6.96 45.56 0.32 6.74 16 39 H 0.06 0.96 7.79 -51.93 -0.40 0.56 16 40 H 0.08 1.27 7.18 -51.93 -0.37 0.89 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.08 1.08 7.95 -51.93 -0.41 0.67 16 46 H 0.08 1.04 7.67 -51.93 -0.40 0.64 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -27.39 373.77 -9.60 -36.99 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -6.53 Total: 12.55 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -3.09 Total: -6.49 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.17 Total: -42.68 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.75 Total: -21.03 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.39 -9.60 -36.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304239871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.291 kcal (2) G-P(sol) polarization free energy of solvation -27.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds