Wall clock time and date at job start Tue Mar 31 2020 11:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86790 * 120.00156 * 2 1 4 4 H 1.48498 * 109.47300 * 240.00149 * 3 2 1 5 5 H 1.48496 * 109.47216 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47256 * 120.00276 * 3 2 1 7 7 C 1.37881 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99682 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99855 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.46499 * 119.99537 * 270.00004 * 10 9 7 12 12 C 1.50697 * 109.46949 * 269.99553 * 11 10 9 13 13 C 1.38680 * 120.42160 * 269.72067 * 12 11 10 14 14 C 1.38623 * 118.42241 * 179.78241 * 13 12 11 15 15 C 1.38233 * 119.16032 * 0.51432 * 14 13 12 16 16 N 1.31854 * 120.76370 * 359.72928 * 15 14 13 17 17 C 1.31888 * 121.72386 * 359.97438 * 16 15 14 18 18 C 1.34777 * 120.00264 * 89.99354 * 10 9 7 19 19 O 1.21283 * 119.99750 * 180.02562 * 18 10 9 20 20 C 1.50702 * 119.99928 * 0.28128 * 18 10 9 21 21 C 1.52996 * 109.47159 * 179.72352 * 20 18 10 22 22 O 1.42903 * 110.01739 * 64.29379 * 21 20 18 23 23 C 1.54272 * 110.03107 * 302.90470 * 21 20 18 24 24 C 1.54959 * 104.16036 * 217.13431 * 23 21 20 25 25 C 1.54890 * 102.77681 * 37.89129 * 24 23 21 26 26 C 1.53868 * 110.03243 * 185.69022 * 21 20 18 27 27 H 0.96999 * 119.99754 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47456 * 60.00299 * 9 7 2 29 29 H 1.09001 * 109.47250 * 299.99743 * 9 7 2 30 30 H 1.09001 * 109.47567 * 29.99407 * 11 10 9 31 31 H 1.09005 * 109.47076 * 149.99913 * 11 10 9 32 32 H 1.08001 * 120.78897 * 0.02614 * 13 12 11 33 33 H 1.08000 * 120.41749 * 180.22294 * 14 13 12 34 34 H 1.07994 * 119.61267 * 179.74648 * 15 14 13 35 35 H 1.08001 * 119.61449 * 180.02562 * 17 16 15 36 36 H 1.09004 * 109.46965 * 299.72211 * 20 18 10 37 37 H 1.08994 * 109.46990 * 59.72065 * 20 18 10 38 38 H 0.96695 * 114.00196 * 300.70282 * 22 21 20 39 39 H 1.08997 * 110.48774 * 335.78711 * 23 21 20 40 40 H 1.09006 * 110.48346 * 98.42818 * 23 21 20 41 41 H 1.08992 * 110.72197 * 279.57464 * 24 23 21 42 42 H 1.09003 * 110.76430 * 156.22291 * 24 23 21 43 43 H 1.09003 * 110.48788 * 203.40171 * 25 24 23 44 44 H 1.09002 * 110.48883 * 80.75761 * 25 24 23 45 45 H 1.09000 * 110.03300 * 238.56425 * 26 21 20 46 46 H 1.08997 * 110.03230 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6128 -0.0005 11 6 2.6789 -4.1695 -1.2693 12 6 1.7621 -5.2836 -1.7043 13 6 2.0113 -6.5908 -1.3139 14 6 1.1386 -7.5826 -1.7339 15 6 0.0627 -7.2396 -2.5312 16 7 -0.1404 -5.9865 -2.8874 17 6 0.6657 -5.0165 -2.5016 18 6 2.6410 -4.1250 1.1666 19 8 3.4294 -5.0465 1.1665 20 6 2.1466 -3.5563 2.4718 21 6 2.7886 -4.3156 3.6346 22 8 4.2023 -4.1075 3.6337 23 6 2.4761 -5.8219 3.5188 24 6 2.2703 -6.2802 4.9847 25 6 1.5288 -5.0772 5.6188 26 6 2.1869 -3.8422 4.9693 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 2.6866 -3.3878 -2.0290 31 1 3.6884 -4.5595 -1.1390 32 1 2.8627 -6.8299 -0.6940 33 1 1.2999 -8.6109 -1.4458 34 1 -0.6194 -8.0070 -2.8660 35 1 0.4668 -4.0017 -2.8131 36 1 2.4157 -2.5018 2.5338 37 1 1.0628 -3.6585 2.5253 38 1 4.6419 -4.3961 2.8222 39 1 1.5669 -5.9794 2.9387 40 1 3.3147 -6.3518 3.0668 41 1 3.2294 -6.4451 5.4755 42 1 1.6545 -7.1787 5.0258 43 1 1.6761 -5.0644 6.6987 44 1 0.4663 -5.1140 5.3782 45 1 2.9734 -3.4545 5.6168 46 1 1.4379 -3.0712 4.7887 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304239871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:05 Heat of formation + Delta-G solvation = -83.662372 kcal Electronic energy + Delta-G solvation = -27782.836009 eV Core-core repulsion = 24056.862505 eV Total energy + Delta-G solvation = -3725.973504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59240 -40.88440 -39.28652 -36.86615 -35.66645 -34.85410 -33.66498 -32.71301 -31.55345 -29.67643 -29.35669 -27.80791 -26.07546 -24.95739 -24.32542 -23.08483 -21.84760 -20.79905 -20.05994 -18.69597 -18.13161 -17.83878 -17.66853 -17.08030 -16.96942 -16.69063 -16.44788 -16.06729 -15.93792 -15.51384 -14.83175 -14.56422 -14.39670 -14.31808 -14.14492 -13.96774 -13.62083 -13.59207 -13.41047 -13.26229 -12.86150 -12.78507 -12.69405 -12.48225 -12.33884 -12.10586 -12.00885 -11.94111 -11.78047 -11.54493 -11.43496 -10.86616 -10.77049 -10.66804 -10.51525 -10.45672 -9.95972 -9.50798 -8.21962 -6.36562 0.11887 0.33535 1.41892 1.43191 1.50128 1.71289 2.26168 2.42887 2.94403 3.08833 3.29415 3.53398 3.58384 3.65913 3.84193 3.88009 3.91361 4.02279 4.10159 4.12057 4.28423 4.39176 4.47398 4.55802 4.57399 4.67621 4.74064 4.74548 4.82643 4.86448 4.90167 4.95664 5.05261 5.07984 5.16135 5.18095 5.20052 5.22263 5.37073 5.42725 5.48556 5.61949 5.77213 5.77881 6.02854 6.50529 6.77522 6.81600 7.00951 7.26076 7.38175 8.83371 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007008 B = 0.006759 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3994.434185 B = 4141.894207 C = 7244.873856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.025 3.975 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.256 3.744 10 N -0.591 5.591 11 C 0.161 3.839 12 C -0.155 4.155 13 C -0.062 4.062 14 C -0.169 4.169 15 C 0.088 3.912 16 N -0.512 5.512 17 C 0.099 3.901 18 C 0.520 3.480 19 O -0.574 6.574 20 C -0.156 4.156 21 C 0.146 3.854 22 O -0.573 6.573 23 C -0.130 4.130 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.118 4.118 27 H 0.268 0.732 28 H 0.021 0.979 29 H 0.025 0.975 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.139 0.861 33 H 0.166 0.834 34 H 0.185 0.815 35 H 0.146 0.854 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.381 0.619 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.028 -13.555 3.855 14.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.778 3.222 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.585 4.585 8 H 0.072 0.928 9 C 0.135 3.865 10 N -0.320 5.320 11 C 0.038 3.962 12 C -0.158 4.158 13 C -0.088 4.088 14 C -0.188 4.188 15 C -0.069 4.069 16 N -0.221 5.221 17 C -0.058 4.058 18 C 0.310 3.690 19 O -0.457 6.457 20 C -0.196 4.196 21 C 0.105 3.895 22 O -0.382 6.382 23 C -0.167 4.167 24 C -0.157 4.157 25 C -0.155 4.155 26 C -0.155 4.155 27 H 0.077 0.923 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.157 0.843 33 H 0.184 0.816 34 H 0.202 0.798 35 H 0.164 0.836 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.231 0.769 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.413 -13.424 3.885 14.046 hybrid contribution 0.974 1.137 -0.432 1.559 sum 2.388 -12.287 3.453 12.985 Atomic orbital electron populations 1.70002 1.07180 1.28247 1.50264 1.25605 0.95497 1.02172 0.94353 0.85683 0.78461 0.79149 0.78876 1.19637 1.20781 1.19856 1.21622 0.93312 0.91501 1.52052 0.92760 1.19041 0.87419 0.82777 0.97259 1.48208 1.45049 1.33806 1.04946 1.20170 0.96345 0.93658 0.86027 1.21266 0.98605 0.96307 0.99598 1.21766 0.99155 0.91966 0.95930 1.22470 0.95588 1.01676 0.99089 1.23337 0.96371 0.93188 0.93973 1.67709 1.29317 1.01946 1.23134 1.22705 0.90308 0.98576 0.94203 1.20673 0.80492 0.81860 0.85949 1.90490 1.36784 1.30523 1.87890 1.22436 1.02445 1.02117 0.92576 1.21683 0.80543 0.93894 0.93380 1.86380 1.20047 1.87053 1.44684 1.22892 1.01431 0.94838 0.97579 1.22510 1.00634 0.98201 0.94377 1.22360 0.99613 0.93076 1.00449 1.22219 0.99883 0.99213 0.94195 0.92320 0.96118 0.95733 0.89611 0.89283 0.84329 0.81615 0.79821 0.83636 0.89386 0.88595 0.76860 0.92512 0.91195 0.91399 0.90211 0.89775 0.90823 0.90773 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.89 13.29 21.45 0.28 -49.60 16 2 C 0.02 1.27 5.46 84.66 0.46 1.73 16 3 Si 0.95 41.37 29.54 68.60 2.03 43.40 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -27.59 9.30 25.60 0.24 -27.35 16 8 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 9 C 0.26 11.80 4.97 85.63 0.43 12.23 16 10 N -0.59 -23.20 2.44 -830.49 -2.03 -25.22 16 11 C 0.16 5.56 5.56 85.63 0.48 6.03 16 12 C -0.15 -4.92 5.48 -19.77 -0.11 -5.03 16 13 C -0.06 -1.71 9.86 22.47 0.22 -1.49 16 14 C -0.17 -3.82 10.11 22.36 0.23 -3.59 16 15 C 0.09 2.16 11.18 84.69 0.95 3.10 16 16 N -0.51 -16.14 10.36 -195.84 -2.03 -18.17 16 17 C 0.10 3.27 10.86 84.67 0.92 4.19 16 18 C 0.52 19.53 7.14 87.66 0.63 20.16 16 19 O -0.57 -21.00 11.75 11.03 0.13 -20.87 16 20 C -0.16 -5.56 3.18 29.85 0.09 -5.46 16 21 C 0.15 4.55 0.98 -10.07 -0.01 4.54 16 22 O -0.57 -19.57 12.89 -134.91 -1.74 -21.31 16 23 C -0.13 -3.64 4.65 31.70 0.15 -3.49 16 24 C -0.12 -2.66 6.91 31.91 0.22 -2.44 16 25 C -0.12 -2.51 6.83 31.67 0.22 -2.29 16 26 C -0.12 -3.17 6.27 31.32 0.20 -2.97 16 27 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 28 H 0.02 1.02 8.07 -2.39 -0.02 1.00 16 29 H 0.02 1.20 6.43 -2.39 -0.02 1.18 16 30 H 0.09 2.98 8.02 -2.39 -0.02 2.96 16 31 H 0.09 2.95 7.37 -2.38 -0.02 2.93 16 32 H 0.14 3.80 7.71 -2.91 -0.02 3.78 16 33 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 34 H 0.18 3.08 8.06 -2.91 -0.02 3.05 16 35 H 0.15 4.96 8.06 -2.91 -0.02 4.94 16 36 H 0.09 3.54 8.03 -2.38 -0.02 3.52 16 37 H 0.10 3.36 7.40 -2.39 -0.02 3.35 16 38 H 0.38 12.85 6.96 -74.06 -0.52 12.33 16 39 H 0.06 1.66 7.79 -2.39 -0.02 1.64 16 40 H 0.07 2.11 7.18 -2.38 -0.02 2.10 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.07 2.02 7.95 -2.39 -0.02 2.00 16 46 H 0.07 2.00 7.67 -2.39 -0.02 1.98 16 Total: -1.00 -58.51 373.77 2.41 -56.11 By element: Atomic # 1 Polarization: 37.35 SS G_CDS: 0.46 Total: 37.81 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 5.30 Total: -2.15 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -3.77 Total: -92.99 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -1.61 Total: -42.17 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -58.51 2.41 -56.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304239871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.557 kcal (2) G-P(sol) polarization free energy of solvation -58.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds