Wall clock time and date at job start Tue Mar 31 2020 12:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36717 * 126.68522 * 2 1 4 4 C 1.46845 * 125.75552 * 359.97438 * 3 2 1 5 5 O 1.21670 * 120.00118 * 0.02562 * 4 3 2 6 6 N 1.34782 * 119.99756 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00052 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.47251 * 179.97438 * 7 6 4 9 9 C 1.50706 * 109.47010 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99907 * 0.02562 * 9 8 7 11 11 C 1.37870 * 119.99681 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00278 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99821 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47296 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46929 * 119.99861 * 13 11 9 16 16 H 1.48499 * 109.47149 * 240.00061 * 13 11 9 17 17 N 1.38194 * 108.48715 * 180.02562 * 3 2 1 18 18 H 0.96999 * 125.34702 * 179.97438 * 17 3 2 19 19 C 1.33320 * 109.30454 * 359.84325 * 17 3 2 20 20 C 1.39496 * 107.90675 * 0.22714 * 19 17 3 21 21 C 1.47106 * 121.62424 * 179.80855 * 20 19 17 22 22 O 1.21320 * 122.44151 * 168.80451 * 21 20 19 23 23 C 1.52146 * 115.11522 * 348.53507 * 21 20 19 24 24 C 1.53183 * 108.42344 * 42.73145 * 23 21 20 25 25 C 1.53006 * 109.23329 * 55.36031 * 24 23 21 26 26 C 1.53003 * 109.23054 * 174.77033 * 24 23 21 27 27 C 1.50759 * 129.22291 * 180.26149 * 19 17 3 28 28 H 1.08998 * 109.47248 * 270.00140 * 1 2 3 29 29 H 1.09001 * 109.46858 * 30.00172 * 1 2 3 30 30 H 1.09001 * 109.46529 * 149.99873 * 1 2 3 31 31 H 0.96997 * 119.99768 * 359.97438 * 6 4 3 32 32 H 1.09004 * 109.46998 * 299.99851 * 7 6 4 33 33 H 1.09003 * 109.47461 * 59.99384 * 7 6 4 34 34 H 1.08995 * 109.47146 * 300.00079 * 8 7 6 35 35 H 1.09000 * 109.46657 * 59.99982 * 8 7 6 36 36 H 0.96999 * 120.00069 * 180.02562 * 12 11 9 37 37 H 1.08999 * 109.67067 * 162.46417 * 23 21 20 38 38 H 1.08997 * 109.67540 * 282.99623 * 23 21 20 39 39 H 1.08995 * 109.47199 * 59.99839 * 25 24 23 40 40 H 1.09001 * 109.47282 * 180.02562 * 25 24 23 41 41 H 1.08997 * 109.46799 * 299.99567 * 25 24 23 42 42 H 1.09000 * 109.47007 * 59.99946 * 26 24 23 43 43 H 1.09000 * 109.47183 * 180.02562 * 26 24 23 44 44 H 1.09005 * 109.46880 * 299.99783 * 26 24 23 45 45 H 1.09003 * 109.51155 * 39.53875 * 27 19 17 46 46 H 1.09005 * 109.54582 * 279.42581 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3238 1.0964 0.0000 4 6 1.8808 2.4964 -0.0005 5 8 0.6927 2.7585 -0.0006 6 7 2.7904 3.4910 -0.0010 7 6 2.3485 4.8877 -0.0010 8 6 3.5699 5.8091 -0.0009 9 6 3.1153 7.2460 -0.0015 10 1 2.0606 7.4786 -0.0015 11 6 4.0457 8.2634 -0.0021 12 7 5.3300 7.9800 -0.0026 13 14 3.4822 10.0444 -0.0021 14 1 1.9980 10.0940 -0.0008 15 1 4.0009 10.7276 1.2101 16 1 3.9997 10.7273 -1.2149 17 7 3.6366 0.6648 -0.0006 18 1 4.4168 1.2411 -0.0011 19 6 3.6624 -0.6682 0.0025 20 6 2.3435 -1.1226 -0.0001 21 6 2.0224 -2.5582 -0.0019 22 8 0.8998 -2.9742 0.1946 23 6 3.1994 -3.4829 -0.2746 24 6 4.4081 -2.9744 0.5171 25 6 4.0331 -2.8684 1.9967 26 6 5.5654 -3.9629 0.3603 27 6 4.8485 -1.5987 0.0086 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3632 -0.8900 -0.5139 31 1 3.7375 3.2820 -0.0006 32 1 1.7486 5.0791 -0.8908 33 1 1.7492 5.0793 0.8892 34 1 4.1694 5.6177 0.8891 35 1 4.1694 5.6177 -0.8909 36 1 5.9846 8.6958 -0.0027 37 1 2.9518 -4.4956 0.0436 38 1 3.4303 -3.4787 -1.3399 39 1 3.7394 -3.8500 2.3684 40 1 4.8906 -2.5063 2.5639 41 1 3.2019 -2.1727 2.1118 42 1 5.8290 -4.0494 -0.6938 43 1 6.4277 -3.6050 0.9227 44 1 5.2636 -4.9389 0.7407 45 1 5.6218 -1.1986 0.6643 46 1 5.2426 -1.6937 -1.0033 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330814039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:21 Heat of formation + Delta-G solvation = -64.206815 kcal Electronic energy + Delta-G solvation = -26461.671340 eV Core-core repulsion = 22736.541492 eV Total energy + Delta-G solvation = -3725.129847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.13943 -39.53118 -38.54545 -37.47742 -35.07779 -33.15146 -32.67651 -31.12960 -29.77058 -29.23695 -27.74902 -27.32718 -26.61991 -24.71752 -22.80347 -21.64307 -21.00304 -20.16809 -19.40274 -18.23313 -18.00565 -16.49209 -16.11190 -15.68282 -15.58512 -15.33831 -14.99469 -14.76524 -14.68292 -14.52329 -14.42222 -13.88528 -13.63750 -13.22625 -13.11241 -12.88472 -12.67829 -12.56679 -12.43622 -12.35333 -12.27776 -12.03740 -11.69809 -11.42551 -11.28206 -11.18733 -11.17088 -11.10735 -10.68368 -10.43702 -9.96087 -9.71445 -9.52998 -9.27684 -9.02121 -8.71001 -8.48110 -8.13565 -6.16576 -4.19372 1.19170 1.54069 2.67465 2.96246 3.24139 3.31810 3.36401 3.50373 3.54221 3.98113 4.12252 4.19884 4.31303 4.36881 4.71128 4.73305 4.89677 4.94959 5.02977 5.10927 5.12235 5.21053 5.27454 5.29952 5.37718 5.47049 5.58315 5.61319 5.64614 5.77589 5.80642 5.93061 5.96689 6.13050 6.19394 6.25755 6.26064 6.52816 6.64087 6.72468 6.76642 7.04924 7.42029 7.51128 7.58604 7.81576 7.85252 8.19598 8.48401 8.86682 9.46118 10.95124 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022116 B = 0.002533 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.767350 B =11052.699567 C =12092.923278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.009 4.009 3 C -0.067 4.067 4 C 0.580 3.420 5 O -0.531 6.531 6 N -0.723 5.723 7 C 0.122 3.878 8 C 0.012 3.988 9 C -0.521 4.521 10 H 0.061 0.939 11 C 0.059 3.941 12 N -0.895 5.895 13 Si 0.897 3.103 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 N -0.508 5.508 18 H 0.421 0.579 19 C 0.108 3.892 20 C -0.274 4.274 21 C 0.431 3.569 22 O -0.462 6.462 23 C -0.154 4.154 24 C -0.050 4.050 25 C -0.154 4.154 26 C -0.142 4.142 27 C -0.050 4.050 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.389 0.611 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.262 0.738 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.088 0.912 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.598 -25.065 0.089 25.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.015 4.015 3 C -0.177 4.177 4 C 0.367 3.633 5 O -0.408 6.408 6 N -0.372 5.372 7 C 0.001 3.999 8 C -0.025 4.025 9 C -0.560 4.560 10 H 0.079 0.921 11 C -0.143 4.143 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.209 1.209 17 N -0.101 5.101 18 H 0.259 0.741 19 C -0.018 4.018 20 C -0.281 4.281 21 C 0.310 3.690 22 O -0.338 6.338 23 C -0.192 4.192 24 C -0.050 4.050 25 C -0.211 4.211 26 C -0.199 4.199 27 C -0.088 4.088 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.222 0.778 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.381 -24.785 0.193 24.900 hybrid contribution 0.995 1.382 -0.011 1.703 sum 3.376 -23.403 0.182 23.646 Atomic orbital electron populations 1.20423 0.88502 1.03277 1.02790 1.19432 0.96104 0.89412 0.96585 1.20290 0.82228 0.94453 1.20771 1.17052 0.86274 0.82685 0.77323 1.90794 1.15839 1.83178 1.50981 1.46242 1.08754 1.07910 1.74316 1.21778 0.99897 0.77100 1.01157 1.19332 0.91753 0.93676 0.97729 1.21078 0.93311 0.90303 1.51285 0.92088 1.24997 0.94842 0.99557 0.94895 1.69955 1.00297 1.32670 1.50462 0.86445 0.79064 0.84360 0.77652 1.19518 1.20899 1.20894 1.41414 1.08255 1.06322 1.54140 0.74112 1.21148 0.96599 0.83313 1.00778 1.20039 0.91918 0.95070 1.21114 1.21811 0.88549 0.87730 0.70925 1.90532 1.24690 1.80397 1.38178 1.22450 0.94295 1.00117 1.02292 1.20443 0.94892 0.93643 0.96057 1.22062 1.02273 1.02607 0.94140 1.21882 0.97078 0.98668 1.02288 1.20464 0.93095 0.92019 1.03243 0.91039 0.89694 0.91370 0.77802 0.92210 0.92219 0.96017 0.96013 0.92865 0.88899 0.88207 0.92043 0.92019 0.91853 0.92069 0.91956 0.91869 0.89402 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.37 9.51 36.01 0.34 -1.03 16 2 C -0.01 -0.13 6.20 -104.51 -0.65 -0.77 16 3 C -0.07 -0.97 7.00 -82.07 -0.57 -1.54 16 4 C 0.58 10.07 7.79 -12.78 -0.10 9.97 16 5 O -0.53 -10.90 14.71 5.22 0.08 -10.82 16 6 N -0.72 -12.22 5.55 -61.57 -0.34 -12.56 16 7 C 0.12 2.53 5.61 -4.04 -0.02 2.51 16 8 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 9 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 16 10 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 13 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 17 N -0.51 -5.22 5.88 -5.30 -0.03 -5.25 16 18 H 0.42 3.18 8.13 -40.82 -0.33 2.85 16 19 C 0.11 1.02 6.66 -81.45 -0.54 0.48 16 20 C -0.27 -3.36 5.28 -105.17 -0.56 -3.92 16 21 C 0.43 5.04 5.92 -30.00 -0.18 4.86 16 22 O -0.46 -6.88 16.99 5.52 0.09 -6.79 16 23 C -0.15 -1.12 5.01 -27.07 -0.14 -1.26 16 24 C -0.05 -0.29 0.75 -154.34 -0.12 -0.40 16 25 C -0.15 -1.07 7.94 37.16 0.29 -0.78 16 26 C -0.14 -0.55 8.43 37.16 0.31 -0.23 16 27 C -0.05 -0.29 4.96 -27.78 -0.14 -0.43 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.08 1.35 6.43 -51.93 -0.33 1.02 16 30 H 0.07 0.96 7.45 -51.93 -0.39 0.58 16 31 H 0.39 5.46 7.55 -40.82 -0.31 5.15 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.60 6.03 -51.93 -0.31 0.29 16 42 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.09 0.38 8.13 -51.93 -0.42 -0.04 16 46 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 373.61 15.07 5.63 5.63 Total: -1.00 -33.57 373.61 -8.60 -42.17 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.13 Total: 1.77 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -2.61 Total: -5.35 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.36 Total: -42.67 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.17 Total: -17.61 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.57 -8.60 -42.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330814039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.033 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds