Wall clock time and date at job start Tue Mar 31 2020 12:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36717 * 126.68522 * 2 1 4 4 C 1.46845 * 125.75552 * 359.97438 * 3 2 1 5 5 O 1.21670 * 120.00118 * 0.02562 * 4 3 2 6 6 N 1.34782 * 119.99756 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00052 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.47251 * 179.97438 * 7 6 4 9 9 C 1.50706 * 109.47010 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99907 * 0.02562 * 9 8 7 11 11 C 1.37870 * 119.99681 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00278 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99821 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47296 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46929 * 119.99861 * 13 11 9 16 16 H 1.48499 * 109.47149 * 240.00061 * 13 11 9 17 17 N 1.38194 * 108.48715 * 180.02562 * 3 2 1 18 18 H 0.96999 * 125.34702 * 179.97438 * 17 3 2 19 19 C 1.33320 * 109.30454 * 359.84325 * 17 3 2 20 20 C 1.39496 * 107.90675 * 0.22714 * 19 17 3 21 21 C 1.47106 * 121.62424 * 179.80855 * 20 19 17 22 22 O 1.21320 * 122.44151 * 168.80451 * 21 20 19 23 23 C 1.52146 * 115.11522 * 348.53507 * 21 20 19 24 24 C 1.53183 * 108.42344 * 42.73145 * 23 21 20 25 25 C 1.53006 * 109.23329 * 55.36031 * 24 23 21 26 26 C 1.53003 * 109.23054 * 174.77033 * 24 23 21 27 27 C 1.50759 * 129.22291 * 180.26149 * 19 17 3 28 28 H 1.08998 * 109.47248 * 270.00140 * 1 2 3 29 29 H 1.09001 * 109.46858 * 30.00172 * 1 2 3 30 30 H 1.09001 * 109.46529 * 149.99873 * 1 2 3 31 31 H 0.96997 * 119.99768 * 359.97438 * 6 4 3 32 32 H 1.09004 * 109.46998 * 299.99851 * 7 6 4 33 33 H 1.09003 * 109.47461 * 59.99384 * 7 6 4 34 34 H 1.08995 * 109.47146 * 300.00079 * 8 7 6 35 35 H 1.09000 * 109.46657 * 59.99982 * 8 7 6 36 36 H 0.96999 * 120.00069 * 180.02562 * 12 11 9 37 37 H 1.08999 * 109.67067 * 162.46417 * 23 21 20 38 38 H 1.08997 * 109.67540 * 282.99623 * 23 21 20 39 39 H 1.08995 * 109.47199 * 59.99839 * 25 24 23 40 40 H 1.09001 * 109.47282 * 180.02562 * 25 24 23 41 41 H 1.08997 * 109.46799 * 299.99567 * 25 24 23 42 42 H 1.09000 * 109.47007 * 59.99946 * 26 24 23 43 43 H 1.09000 * 109.47183 * 180.02562 * 26 24 23 44 44 H 1.09005 * 109.46880 * 299.99783 * 26 24 23 45 45 H 1.09003 * 109.51155 * 39.53875 * 27 19 17 46 46 H 1.09005 * 109.54582 * 279.42581 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3238 1.0964 0.0000 4 6 1.8808 2.4964 -0.0005 5 8 0.6927 2.7585 -0.0006 6 7 2.7904 3.4910 -0.0010 7 6 2.3485 4.8877 -0.0010 8 6 3.5699 5.8091 -0.0009 9 6 3.1153 7.2460 -0.0015 10 1 2.0606 7.4786 -0.0015 11 6 4.0457 8.2634 -0.0021 12 7 5.3300 7.9800 -0.0026 13 14 3.4822 10.0444 -0.0021 14 1 1.9980 10.0940 -0.0008 15 1 4.0009 10.7276 1.2101 16 1 3.9997 10.7273 -1.2149 17 7 3.6366 0.6648 -0.0006 18 1 4.4168 1.2411 -0.0011 19 6 3.6624 -0.6682 0.0025 20 6 2.3435 -1.1226 -0.0001 21 6 2.0224 -2.5582 -0.0019 22 8 0.8998 -2.9742 0.1946 23 6 3.1994 -3.4829 -0.2746 24 6 4.4081 -2.9744 0.5171 25 6 4.0331 -2.8684 1.9967 26 6 5.5654 -3.9629 0.3603 27 6 4.8485 -1.5987 0.0086 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3632 -0.8900 -0.5139 31 1 3.7375 3.2820 -0.0006 32 1 1.7486 5.0791 -0.8908 33 1 1.7492 5.0793 0.8892 34 1 4.1694 5.6177 0.8891 35 1 4.1694 5.6177 -0.8909 36 1 5.9846 8.6958 -0.0027 37 1 2.9518 -4.4956 0.0436 38 1 3.4303 -3.4787 -1.3399 39 1 3.7394 -3.8500 2.3684 40 1 4.8906 -2.5063 2.5639 41 1 3.2019 -2.1727 2.1118 42 1 5.8290 -4.0494 -0.6938 43 1 6.4277 -3.6050 0.9227 44 1 5.2636 -4.9389 0.7407 45 1 5.6218 -1.1986 0.6643 46 1 5.2426 -1.6937 -1.0033 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330814039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:20 Heat of formation + Delta-G solvation = -86.061447 kcal Electronic energy + Delta-G solvation = -26462.619028 eV Core-core repulsion = 22736.541492 eV Total energy + Delta-G solvation = -3726.077535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.07419 -40.64607 -39.69561 -38.17129 -36.73641 -34.95298 -33.89299 -32.23570 -31.24617 -29.99618 -28.38735 -28.01775 -27.81580 -26.36104 -23.91273 -22.90931 -22.50681 -20.98437 -20.51001 -19.36033 -18.78362 -18.47953 -17.04298 -16.82877 -16.74104 -16.51962 -16.25943 -16.13011 -15.83248 -15.39828 -15.28483 -14.86854 -14.82635 -14.56805 -14.28561 -14.17832 -13.93893 -13.68534 -13.34715 -13.25250 -12.98797 -12.95452 -12.91908 -12.59806 -12.55395 -12.50382 -12.29526 -11.99992 -11.72579 -11.66867 -11.63324 -11.48739 -11.07285 -10.63602 -10.50915 -10.20496 -10.01682 -9.15710 -8.27047 -6.36778 0.31026 0.41600 1.39348 1.41101 1.53567 1.78172 2.00021 2.11212 2.28842 2.41571 3.08267 3.23913 3.53500 3.62137 3.77717 3.80862 3.87408 4.11204 4.23001 4.32990 4.43169 4.44908 4.53353 4.59928 4.70327 4.72024 4.73098 4.80819 4.88271 4.94278 4.97772 5.03179 5.03927 5.15049 5.17258 5.21666 5.32283 5.40931 5.42056 5.50770 5.54100 5.54587 5.62583 5.75345 6.12846 6.24214 6.51216 6.72193 6.75969 7.10413 7.32704 8.84908 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022116 B = 0.002533 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.767350 B =11052.699567 C =12092.923278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.026 4.026 3 C -0.090 4.090 4 C 0.581 3.419 5 O -0.570 6.570 6 N -0.715 5.715 7 C 0.142 3.858 8 C 0.024 3.976 9 C -0.546 4.546 10 H 0.057 0.943 11 C 0.009 3.991 12 N -0.925 5.925 13 Si 0.963 3.037 14 H -0.267 1.267 15 H -0.277 1.277 16 H -0.276 1.276 17 N -0.496 5.496 18 H 0.436 0.564 19 C 0.150 3.850 20 C -0.304 4.304 21 C 0.427 3.573 22 O -0.508 6.508 23 C -0.147 4.147 24 C -0.043 4.043 25 C -0.156 4.156 26 C -0.137 4.137 27 C -0.052 4.052 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.405 0.595 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.011 0.989 35 H 0.011 0.989 36 H 0.266 0.734 37 H 0.100 0.900 38 H 0.123 0.877 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.032 0.968 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.115 0.885 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.377 -26.365 -0.286 27.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.034 4.034 3 C -0.199 4.199 4 C 0.370 3.630 5 O -0.451 6.451 6 N -0.365 5.365 7 C 0.018 3.982 8 C -0.013 4.013 9 C -0.585 4.585 10 H 0.076 0.924 11 C -0.190 4.190 12 N -0.564 5.564 13 Si 0.787 3.213 14 H -0.192 1.192 15 H -0.202 1.202 16 H -0.202 1.202 17 N -0.090 5.090 18 H 0.277 0.723 19 C 0.021 3.979 20 C -0.310 4.310 21 C 0.309 3.691 22 O -0.387 6.387 23 C -0.185 4.185 24 C -0.044 4.044 25 C -0.213 4.213 26 C -0.194 4.194 27 C -0.090 4.090 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.240 0.760 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.141 0.859 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.133 0.867 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.211 -26.084 -0.183 26.600 hybrid contribution 0.158 1.688 0.128 1.700 sum 5.369 -24.396 -0.055 24.980 Atomic orbital electron populations 1.20300 0.89601 1.02347 1.02202 1.19622 0.96026 0.90880 0.96835 1.19662 0.84137 0.92431 1.23709 1.17383 0.85643 0.83759 0.76202 1.90768 1.17508 1.84012 1.52769 1.45951 1.09701 1.06392 1.74436 1.21283 0.98109 0.78649 1.00124 1.19130 0.92443 0.93245 0.96504 1.21479 0.93387 0.92124 1.51496 0.92425 1.25821 0.94933 1.03816 0.94400 1.70041 1.01245 1.34117 1.51022 0.85429 0.78704 0.79186 0.77935 1.19155 1.20208 1.20166 1.41323 1.07269 1.06944 1.53504 0.72308 1.21803 0.97046 0.83023 0.95982 1.20281 0.92880 0.95190 1.22679 1.22486 0.89188 0.88136 0.69320 1.90511 1.26770 1.80943 1.40447 1.22505 0.92757 0.99241 1.03951 1.20444 0.94986 0.94313 0.94633 1.22095 1.01684 1.01956 0.95609 1.21849 0.96130 0.97893 1.03520 1.20814 0.91682 0.90667 1.05815 0.91554 0.91391 0.91305 0.75964 0.93259 0.93345 0.97105 0.97050 0.92495 0.88192 0.85933 0.91946 0.90619 0.94894 0.90619 0.90856 0.91732 0.86672 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.79 9.51 71.24 0.68 -2.11 16 2 C -0.03 -0.80 6.20 -19.79 -0.12 -0.92 16 3 C -0.09 -2.58 7.00 40.04 0.28 -2.30 16 4 C 0.58 20.71 7.79 86.49 0.67 21.38 16 5 O -0.57 -24.60 14.71 -4.25 -0.06 -24.66 16 6 N -0.71 -24.38 5.55 -466.92 -2.59 -26.97 16 7 C 0.14 6.00 5.61 86.38 0.48 6.48 16 8 C 0.02 1.18 5.09 29.85 0.15 1.33 16 9 C -0.55 -30.01 9.11 25.60 0.23 -29.78 16 10 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 11 C 0.01 0.51 5.46 84.65 0.46 0.97 16 12 N -0.92 -52.80 13.29 21.44 0.28 -52.52 16 13 Si 0.96 43.04 29.54 68.60 2.03 45.06 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 15 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 16 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 17 N -0.50 -9.24 5.88 -170.68 -1.00 -10.24 16 18 H 0.44 5.42 8.13 -92.71 -0.75 4.66 16 19 C 0.15 2.44 6.66 42.65 0.28 2.72 16 20 C -0.30 -7.26 5.28 -20.22 -0.11 -7.36 16 21 C 0.43 9.74 5.92 28.48 0.17 9.91 16 22 O -0.51 -15.62 16.99 -3.15 -0.05 -15.67 16 23 C -0.15 -1.74 5.01 30.37 0.15 -1.59 16 24 C -0.04 -0.33 0.75 -52.07 -0.04 -0.37 16 25 C -0.16 -1.80 7.94 71.98 0.57 -1.23 16 26 C -0.14 -0.38 8.43 71.98 0.61 0.22 16 27 C -0.05 -0.35 4.96 29.91 0.15 -0.20 16 28 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.07 2.36 6.43 -2.39 -0.02 2.35 16 30 H 0.07 2.11 7.45 -2.39 -0.02 2.09 16 31 H 0.41 11.13 7.55 -92.71 -0.70 10.43 16 32 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 33 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.27 14.25 8.31 -92.71 -0.77 13.47 16 37 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.03 0.58 6.03 -2.39 -0.01 0.57 16 42 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 43 H 0.07 0.10 8.14 -2.39 -0.02 0.09 16 44 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 45 H 0.12 0.31 8.13 -2.39 -0.02 0.29 16 46 H 0.13 0.26 8.14 -2.38 -0.02 0.24 16 Total: -1.00 -75.91 373.61 2.78 -73.13 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -0.45 Total: 14.70 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 4.63 Total: -2.83 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -3.31 Total: -89.73 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -0.12 Total: -40.33 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -75.91 2.78 -73.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330814039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.932 kcal (2) G-P(sol) polarization free energy of solvation -75.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds