Wall clock time and date at job start Tue Mar 31 2020 12:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99746 * 2 1 4 4 H 1.48502 * 109.47414 * 270.00544 * 3 2 1 5 5 H 1.48508 * 109.46996 * 30.00644 * 3 2 1 6 6 H 1.48504 * 109.47088 * 150.00217 * 3 2 1 7 7 C 1.37876 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99428 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99927 * 359.97438 * 7 2 1 10 10 N 1.46508 * 109.47141 * 180.02562 * 9 7 2 11 11 C 1.46497 * 119.99646 * 84.10258 * 10 9 7 12 12 C 1.50700 * 109.47067 * 90.00725 * 11 10 9 13 13 C 1.38226 * 119.62260 * 95.01631 * 12 11 10 14 14 C 1.38625 * 119.16057 * 179.74954 * 13 12 11 15 15 C 1.38667 * 118.42211 * 0.47334 * 14 13 12 16 16 C 1.38175 * 119.16445 * 359.50383 * 15 14 13 17 17 N 1.31855 * 119.61586 * 274.99696 * 12 11 10 18 18 C 1.34773 * 119.99686 * 264.10753 * 10 9 7 19 19 O 1.21287 * 119.99700 * 184.62310 * 18 10 9 20 20 C 1.50693 * 120.00214 * 4.62449 * 18 10 9 21 21 C 1.53002 * 109.47230 * 286.16362 * 20 18 10 22 22 C 1.52999 * 109.47347 * 180.02562 * 21 20 18 23 23 C 1.53000 * 109.47305 * 59.99827 * 22 21 20 24 24 O 1.42899 * 109.46887 * 59.99895 * 23 22 21 25 25 C 1.53002 * 109.47059 * 300.00348 * 23 22 21 26 26 C 1.52999 * 109.47347 * 59.99677 * 25 23 22 27 27 H 0.97004 * 120.00453 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47468 * 60.00705 * 9 7 2 29 29 H 1.09003 * 109.47282 * 299.99909 * 9 7 2 30 30 H 1.09002 * 109.47760 * 330.00288 * 11 10 9 31 31 H 1.09004 * 109.46980 * 209.99904 * 11 10 9 32 32 H 1.08001 * 120.41935 * 359.95404 * 13 12 11 33 33 H 1.08003 * 120.78946 * 180.23153 * 14 13 12 34 34 H 1.08009 * 120.42155 * 179.78205 * 15 14 13 35 35 H 1.08002 * 119.62028 * 180.25595 * 16 15 14 36 36 H 1.09000 * 109.47595 * 46.16298 * 20 18 10 37 37 H 1.09001 * 109.47066 * 299.99969 * 21 20 18 38 38 H 1.09000 * 109.46836 * 59.99902 * 21 20 18 39 39 H 1.09001 * 109.46782 * 299.99860 * 22 21 20 40 40 H 1.09000 * 109.47098 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.47053 * 180.02562 * 23 22 21 42 42 H 0.96702 * 114.00131 * 60.00409 * 24 23 22 43 43 H 1.09000 * 109.46779 * 299.99525 * 25 23 22 44 44 H 1.09000 * 109.46836 * 180.02562 * 25 23 22 45 45 H 1.08994 * 109.47419 * 179.97438 * 26 25 23 46 46 H 1.09001 * 109.46782 * 60.00140 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.7782 -4.0846 1.2615 12 6 1.9013 -5.1650 1.8401 13 6 2.1961 -6.4919 1.5889 14 6 1.3861 -7.4780 2.1303 15 6 0.2991 -7.0908 2.8993 16 6 0.0671 -5.7447 3.1077 17 7 0.8618 -4.8336 2.5805 18 6 2.5500 -4.2026 -1.1616 19 8 3.2721 -5.1771 -1.1546 20 6 2.0406 -3.6517 -2.4684 21 6 0.5592 -4.0003 -2.6261 22 6 0.0421 -3.4414 -3.9532 23 6 0.8361 -4.0542 -5.1086 24 8 0.6769 -5.4743 -5.0954 25 6 2.3175 -3.7056 -4.9509 26 6 2.8345 -4.2645 -3.6238 27 1 -0.4851 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 2.8432 -3.2540 1.9644 31 1 3.7755 -4.4851 1.0791 32 1 3.0487 -6.7570 0.9813 33 1 1.5943 -8.5230 1.9540 34 1 -0.3554 -7.8321 3.3337 35 1 -0.7750 -5.4349 3.7089 36 1 2.1619 -2.5685 -2.4780 37 1 0.4378 -5.0834 -2.6165 38 1 -0.0063 -3.5640 -1.8027 39 1 0.1636 -2.3582 -3.9632 40 1 -1.0131 -3.6901 -4.0657 41 1 0.4680 -3.6557 -6.0540 42 1 -0.2393 -5.7683 -5.1913 43 1 2.4389 -2.6225 -4.9610 44 1 2.8830 -4.1419 -5.7743 45 1 3.8899 -4.0166 -3.5117 46 1 2.7131 -5.3477 -3.6138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330994228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:48 Heat of formation + Delta-G solvation = -63.335094 kcal Electronic energy + Delta-G solvation = -27935.573355 eV Core-core repulsion = 24210.481308 eV Total energy + Delta-G solvation = -3725.092047 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.14185 -39.51608 -37.98640 -35.10345 -34.68527 -32.77116 -32.13770 -31.48969 -30.45759 -29.67287 -27.48095 -26.11932 -23.41632 -23.13844 -22.67299 -22.25668 -21.49611 -19.63415 -18.26568 -16.87904 -16.70143 -16.33756 -16.28238 -15.80388 -15.56154 -15.25226 -15.07215 -14.51492 -14.41404 -14.05773 -13.47363 -13.23492 -13.04894 -12.92199 -12.69235 -12.63423 -12.32498 -11.96018 -11.77767 -11.70094 -11.50945 -11.42694 -11.15507 -10.98746 -10.89583 -10.74815 -10.52120 -10.17260 -10.03952 -9.88162 -9.77236 -9.61542 -9.44334 -9.13904 -8.98760 -8.65782 -8.42921 -7.69998 -6.12954 -4.19052 1.34931 1.55884 3.24496 3.32007 3.34674 3.42894 3.81794 4.29251 4.36694 4.45392 4.64767 4.95978 4.99119 5.01561 5.08557 5.16940 5.20284 5.29636 5.42651 5.48875 5.50897 5.58759 5.71424 5.83217 5.84329 5.87029 5.88798 6.05923 6.14405 6.23694 6.26056 6.31322 6.33189 6.40616 6.44200 6.49850 6.55036 6.64814 6.84312 6.95193 6.97051 7.36442 7.59752 7.78222 7.81414 8.12218 8.32925 8.43178 8.83943 9.05379 9.47365 10.93769 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007661 B = 0.006521 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3653.771497 B = 4293.017833 C = 6836.335415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.060 0.940 9 C 0.226 3.774 10 N -0.586 5.586 11 C 0.167 3.833 12 C 0.122 3.878 13 C -0.150 4.150 14 C -0.084 4.084 15 C -0.182 4.182 16 C 0.093 3.907 17 N -0.464 5.464 18 C 0.521 3.479 19 O -0.573 6.573 20 C -0.100 4.100 21 C -0.107 4.107 22 C -0.148 4.148 23 C 0.105 3.895 24 O -0.563 6.563 25 C -0.112 4.112 26 C -0.092 4.092 27 H 0.264 0.736 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.138 0.862 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.151 0.849 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.371 0.629 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.008 -10.376 -3.301 10.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.078 0.922 9 C 0.107 3.893 10 N -0.316 5.316 11 C 0.043 3.957 12 C -0.017 4.017 13 C -0.171 4.171 14 C -0.110 4.110 15 C -0.203 4.203 16 C -0.064 4.064 17 N -0.173 5.173 18 C 0.310 3.690 19 O -0.454 6.454 20 C -0.121 4.121 21 C -0.145 4.145 22 C -0.186 4.186 23 C 0.046 3.954 24 O -0.368 6.368 25 C -0.149 4.149 26 C -0.129 4.129 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.156 0.844 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.169 0.831 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.217 0.783 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.316 -9.800 -3.057 10.271 hybrid contribution -0.259 0.201 -0.071 0.336 sum -0.575 -9.599 -3.128 10.112 Atomic orbital electron populations 1.69927 1.05924 1.27083 1.49877 1.24902 0.94804 0.99063 0.94902 0.86568 0.79911 0.83224 0.78173 1.20597 1.21150 1.19842 1.21486 0.93532 0.90580 1.51805 0.92205 1.19774 0.87713 0.82203 0.99610 1.48203 1.45112 1.34342 1.03898 1.20130 0.94083 0.94718 0.86791 1.21900 0.93162 0.93831 0.92841 1.22133 1.01403 0.93516 1.00022 1.21537 0.94226 0.99737 0.95540 1.22072 0.99119 0.97769 1.01304 1.22754 0.97693 0.89105 0.96855 1.67608 1.03511 1.38345 1.07840 1.20584 0.79972 0.82643 0.85788 1.90551 1.39608 1.27338 1.87925 1.21223 0.96086 1.02740 0.92050 1.21535 0.94319 1.00976 0.97649 1.22207 0.99017 1.01773 0.95553 1.21812 0.96466 0.80891 0.96212 1.86543 1.31716 1.21865 1.96635 1.21563 0.93899 1.00985 0.98452 1.21215 0.98470 1.01395 0.91868 0.92660 0.93023 0.93910 0.88551 0.89599 0.84422 0.85365 0.85386 0.83134 0.87682 0.91946 0.89975 0.90358 0.91927 0.93286 0.78281 0.90582 0.91616 0.92140 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.40 13.29 55.43 0.74 -23.66 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -13.85 9.18 -34.44 -0.32 -14.17 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.23 5.41 4.72 -5.19 -0.02 5.38 16 10 N -0.59 -12.51 2.44 -176.43 -0.43 -12.94 16 11 C 0.17 3.27 5.70 -5.20 -0.03 3.24 16 12 C 0.12 2.24 6.36 -82.59 -0.53 1.71 16 13 C -0.15 -2.44 9.72 -39.44 -0.38 -2.82 16 14 C -0.08 -1.14 10.18 -39.28 -0.40 -1.54 16 15 C -0.18 -2.34 10.11 -39.45 -0.40 -2.74 16 16 C 0.09 1.40 11.18 -17.55 -0.20 1.21 16 17 N -0.46 -8.64 10.27 -9.47 -0.10 -8.74 16 18 C 0.52 10.86 6.91 -10.99 -0.08 10.79 16 19 O -0.57 -12.55 15.39 5.55 0.09 -12.47 16 20 C -0.10 -1.85 1.70 -91.77 -0.16 -2.01 16 21 C -0.11 -1.84 4.72 -26.73 -0.13 -1.96 16 22 C -0.15 -2.08 5.64 -26.73 -0.15 -2.23 16 23 C 0.10 1.35 3.77 -26.73 -0.10 1.25 16 24 O -0.56 -7.40 11.97 -35.23 -0.42 -7.83 16 25 C -0.11 -1.54 5.66 -26.73 -0.15 -1.69 16 26 C -0.09 -1.53 4.45 -26.73 -0.12 -1.65 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.05 1.25 3.99 -51.93 -0.21 1.04 16 29 H 0.04 1.13 8.11 -51.93 -0.42 0.71 16 30 H 0.10 1.94 8.07 -51.93 -0.42 1.52 16 31 H 0.09 1.58 7.39 -51.93 -0.38 1.20 16 32 H 0.14 2.23 7.83 -52.49 -0.41 1.82 16 33 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 34 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 35 H 0.15 1.85 8.06 -52.49 -0.42 1.42 16 36 H 0.11 2.11 7.49 -51.93 -0.39 1.72 16 37 H 0.06 1.08 7.68 -51.93 -0.40 0.68 16 38 H 0.08 1.58 5.45 -51.93 -0.28 1.30 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.37 3.38 9.08 45.56 0.41 3.79 16 43 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.07 1.37 7.49 -51.93 -0.39 0.98 16 LS Contribution 371.42 15.07 5.60 5.60 Total: -1.00 -30.64 371.42 -9.04 -39.68 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -6.24 Total: 10.46 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -3.25 Total: -5.60 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.21 Total: -45.33 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.34 Total: -20.30 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.64 -9.04 -39.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330994228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.656 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds