Wall clock time and date at job start Tue Mar 31 2020 12:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99910 * 2 1 4 4 H 1.48507 * 109.47046 * 239.99705 * 3 2 1 5 5 H 1.48502 * 109.47463 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46904 * 120.00112 * 3 2 1 7 7 C 1.37879 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99617 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99960 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.67457 * 61.78526 * 9 7 2 11 11 C 1.54889 * 110.75748 * 298.54427 * 9 7 2 12 12 C 1.54272 * 104.19449 * 203.74410 * 11 9 7 13 13 C 1.53874 * 106.59702 * 23.61391 * 12 11 9 14 14 H 1.08998 * 110.03081 * 240.66241 * 13 12 11 15 15 N 1.46503 * 110.02956 * 119.28627 * 13 12 11 16 16 C 1.34766 * 120.00379 * 87.08824 * 15 13 12 17 17 O 1.21591 * 120.00174 * 0.02562 * 16 15 13 18 18 N 1.34780 * 120.00282 * 179.97438 * 16 15 13 19 19 C 1.47426 * 125.64645 * 0.02598 * 18 16 15 20 20 C 1.54912 * 104.83261 * 203.86243 * 19 18 16 21 21 C 1.55155 * 101.57968 * 322.99067 * 20 19 18 22 22 C 1.47024 * 125.64847 * 179.71561 * 18 16 15 23 23 H 1.09002 * 109.88101 * 59.79072 * 22 18 16 24 24 C 1.50702 * 109.88340 * 298.62314 * 22 18 16 25 25 C 1.34510 * 125.78779 * 139.71672 * 24 22 18 26 26 C 1.41378 * 106.83959 * 179.89401 * 25 24 22 27 27 C 1.34510 * 106.84366 * 0.36831 * 26 25 24 28 28 O 1.34302 * 125.78902 * 320.03075 * 24 22 18 29 29 C 1.54266 * 106.64398 * 359.97351 * 13 12 11 30 30 H 0.97006 * 120.00056 * 0.02562 * 1 2 3 31 31 H 1.09006 * 110.48332 * 85.06887 * 11 9 7 32 32 H 1.08997 * 110.48695 * 322.42345 * 11 9 7 33 33 H 1.08997 * 110.03230 * 264.32423 * 12 11 9 34 34 H 1.09002 * 110.02633 * 142.89678 * 12 11 9 35 35 H 0.97002 * 119.99503 * 267.08791 * 15 13 12 36 36 H 1.09002 * 110.36518 * 322.69812 * 19 18 16 37 37 H 1.08995 * 110.36673 * 84.90922 * 19 18 16 38 38 H 1.08997 * 111.00012 * 81.06132 * 20 19 18 39 39 H 1.08992 * 111.00287 * 204.87830 * 20 19 18 40 40 H 1.08999 * 110.71965 * 153.86238 * 21 20 19 41 41 H 1.08996 * 110.72196 * 277.13505 * 21 20 19 42 42 H 1.08004 * 126.57743 * 0.02762 * 25 24 22 43 43 H 1.08003 * 126.58071 * 180.12511 * 26 25 24 44 44 H 1.07997 * 125.79547 * 179.79216 * 27 26 25 45 45 H 1.08992 * 110.48695 * 95.09241 * 29 13 12 46 46 H 1.08992 * 110.48634 * 217.74185 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6406 -2.5911 -0.8990 11 6 0.3776 -2.6287 1.2721 12 6 0.1830 -4.1494 1.4441 13 6 1.3581 -4.8278 0.7183 14 1 0.9841 -5.4664 -0.0819 15 7 2.1434 -5.6209 1.6673 16 6 1.7970 -6.8970 1.9278 17 8 0.8329 -7.3903 1.3749 18 7 2.5198 -7.6268 2.8004 19 6 3.7068 -7.1566 3.5376 20 6 4.4948 -8.4447 3.8834 21 6 3.3450 -9.4420 4.1841 22 6 2.2512 -9.0217 3.1797 23 1 2.2929 -9.6603 2.2974 24 6 0.8942 -9.1247 3.8269 25 6 0.0028 -10.1131 3.6322 26 6 -1.1233 -9.8125 4.4324 27 6 -0.8562 -8.6543 5.0619 28 8 0.3672 -8.2422 4.6913 29 6 2.2261 -3.6965 0.1296 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5834 -2.1351 1.1271 32 1 0.8961 -2.2105 2.1348 33 1 -0.7612 -4.4581 0.9956 34 1 0.1971 -4.4102 2.5024 35 1 2.9127 -5.2276 2.1081 36 1 4.3088 -6.5009 2.9084 37 1 3.4070 -6.6373 4.4478 38 1 5.0895 -8.7788 3.0332 39 1 5.1224 -8.2947 4.7617 40 1 3.6653 -10.4672 3.9986 41 1 2.9924 -9.3265 5.2090 42 1 0.1250 -10.9726 2.9897 43 1 -2.0266 -10.3983 4.5184 44 1 -1.5137 -8.1425 5.7491 45 1 3.0434 -3.4507 0.8074 46 1 2.6131 -3.9823 -0.8484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331553496.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:38 Heat of formation + Delta-G solvation = -17.185457 kcal Electronic energy + Delta-G solvation = -27211.116122 eV Core-core repulsion = 23488.025274 eV Total energy + Delta-G solvation = -3723.090848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.56484 -40.17407 -38.10222 -36.68129 -33.69373 -33.01204 -32.24235 -31.29933 -30.97912 -28.10501 -27.58208 -26.86569 -24.12573 -23.41786 -21.83576 -21.68102 -21.00059 -19.84720 -19.53535 -18.94425 -18.04401 -17.21944 -16.70416 -16.29828 -15.89837 -15.40251 -15.05715 -14.62123 -14.31393 -14.14917 -14.06101 -13.56226 -13.43349 -12.91609 -12.79921 -12.71784 -12.59579 -12.45755 -12.28479 -11.73055 -11.68695 -11.52446 -11.18150 -11.06826 -10.95339 -10.87881 -10.58684 -10.27794 -9.93861 -9.88484 -9.76958 -9.47683 -9.19501 -8.90867 -8.78045 -8.49562 -8.36000 -8.30200 -5.98687 -4.02408 1.72517 2.53751 2.75163 3.01658 3.32149 3.37448 3.39157 3.47091 4.10110 4.26219 4.35194 4.45081 4.50059 4.76117 4.92809 5.04707 5.06195 5.21826 5.33273 5.35434 5.42393 5.52342 5.54855 5.58683 5.73791 5.78032 5.82476 5.89763 5.91058 6.04729 6.14264 6.38321 6.42129 6.49885 6.65478 6.72027 6.79813 6.94321 7.01949 7.07675 7.23301 7.32153 7.42299 7.74782 7.91439 8.05363 8.19956 8.44837 8.85553 8.99360 9.61461 11.10312 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.003008 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.875259 B = 9306.100387 C =10021.773691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.052 3.948 10 H 0.032 0.968 11 C -0.099 4.099 12 C -0.135 4.135 13 C 0.157 3.843 14 H 0.079 0.921 15 N -0.729 5.729 16 C 0.721 3.279 17 O -0.583 6.583 18 N -0.637 5.637 19 C 0.097 3.903 20 C -0.129 4.129 21 C -0.125 4.125 22 C 0.239 3.761 23 H 0.102 0.898 24 C -0.007 4.007 25 C -0.203 4.203 26 C -0.214 4.214 27 C -0.043 4.043 28 O -0.166 6.166 29 C -0.120 4.120 30 H 0.260 0.740 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.392 0.608 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.199 0.801 45 H 0.059 0.941 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.464 -20.201 11.345 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.033 3.967 10 H 0.050 0.950 11 C -0.137 4.137 12 C -0.173 4.173 13 C 0.053 3.947 14 H 0.097 0.903 15 N -0.383 5.383 16 C 0.423 3.577 17 O -0.460 6.460 18 N -0.376 5.376 19 C -0.026 4.026 20 C -0.168 4.168 21 C -0.163 4.163 22 C 0.134 3.866 23 H 0.120 0.880 24 C -0.059 4.059 25 C -0.223 4.223 26 C -0.233 4.233 27 C -0.111 4.111 28 O -0.061 6.061 29 C -0.158 4.158 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.226 0.774 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.162 0.838 43 H 0.163 0.837 44 H 0.216 0.784 45 H 0.078 0.922 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.674 -20.090 10.926 23.562 hybrid contribution 0.413 0.999 0.287 1.119 sum 6.088 -19.091 11.213 22.962 Atomic orbital electron populations 1.69956 1.05862 1.26522 1.50277 1.24977 0.94833 0.98976 0.95113 0.86702 0.79609 0.83379 0.78519 1.20332 1.21370 1.20370 1.21056 0.92686 0.90464 1.51124 0.92735 1.19559 0.91993 0.90950 0.94176 0.94962 1.22298 1.01585 0.90402 0.99452 1.22660 0.97131 0.98708 0.98844 1.21751 0.91713 0.91433 0.89847 0.90308 1.45549 1.33856 1.10812 1.48114 1.15524 0.81877 0.81277 0.79058 1.90925 1.28898 1.71518 1.54643 1.47672 1.31295 1.12840 1.45806 1.22308 0.86424 0.97183 0.96698 1.22772 0.96986 0.94360 1.02632 1.22747 0.94073 1.00216 0.99269 1.19877 0.86955 0.83947 0.95869 0.88006 1.22626 0.97538 0.90342 0.95373 1.21469 0.94203 1.01991 1.04600 1.21756 1.00733 0.99043 1.01790 1.23999 0.86086 0.97376 1.03663 1.84013 1.28100 1.44723 1.49311 1.22765 0.98724 0.95447 0.98872 0.93021 0.91295 0.93606 0.92699 0.93333 0.77375 0.90439 0.91314 0.90144 0.89438 0.89246 0.90007 0.83757 0.83687 0.78433 0.92191 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 12.02 55.43 0.67 -24.80 16 2 C 0.06 1.73 5.33 -17.82 -0.10 1.64 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -13.91 8.54 -34.44 -0.29 -14.20 16 8 H 0.05 1.44 7.78 -52.49 -0.41 1.03 16 9 C 0.05 1.28 2.82 -89.74 -0.25 1.03 16 10 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 11 C -0.10 -2.34 5.57 -25.07 -0.14 -2.48 16 12 C -0.13 -2.79 6.59 -25.61 -0.17 -2.96 16 13 C 0.16 3.01 3.23 -66.81 -0.22 2.79 16 14 H 0.08 1.61 7.58 -51.93 -0.39 1.21 16 15 N -0.73 -12.05 4.95 -57.58 -0.28 -12.33 16 16 C 0.72 12.41 8.27 -86.93 -0.72 11.69 16 17 O -0.58 -12.33 15.84 5.29 0.08 -12.25 16 18 N -0.64 -8.32 3.06 -170.00 -0.52 -8.83 16 19 C 0.10 0.89 6.57 -2.53 -0.02 0.88 16 20 C -0.13 -0.82 7.09 -24.58 -0.17 -0.99 16 21 C -0.13 -0.91 6.47 -24.90 -0.16 -1.07 16 22 C 0.24 2.70 3.31 -68.10 -0.23 2.47 16 23 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 24 C -0.01 -0.09 5.25 -35.63 -0.19 -0.28 16 25 C -0.20 -2.57 10.80 -39.71 -0.43 -3.00 16 26 C -0.21 -2.55 10.91 -39.71 -0.43 -2.98 16 27 C -0.04 -0.53 12.09 29.41 0.36 -0.17 16 28 O -0.17 -2.41 10.65 5.70 0.06 -2.35 16 29 C -0.12 -2.42 5.95 -25.03 -0.15 -2.57 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.07 1.78 7.38 -51.93 -0.38 1.40 16 32 H 0.05 1.11 8.04 -51.93 -0.42 0.69 16 33 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.99 7.92 -51.93 -0.41 0.58 16 35 H 0.39 5.55 6.83 -40.82 -0.28 5.27 16 36 H 0.08 0.65 7.31 -51.93 -0.38 0.27 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.62 7.84 -51.93 -0.41 0.21 16 42 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 43 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 44 H 0.20 1.69 8.06 -52.49 -0.42 1.27 16 45 H 0.06 1.16 7.63 -51.93 -0.40 0.76 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -33.41 372.10 -9.97 -43.38 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -7.26 Total: 5.69 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -3.31 Total: -10.21 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.14 Total: -45.97 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.14 Total: -14.60 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.41 -9.97 -43.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331553496.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.199 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds