Wall clock time and date at job start Tue Mar 31 2020 12:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99910 * 2 1 4 4 H 1.48507 * 109.47046 * 239.99705 * 3 2 1 5 5 H 1.48502 * 109.47463 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46904 * 120.00112 * 3 2 1 7 7 C 1.37879 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99617 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99960 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.67457 * 61.78526 * 9 7 2 11 11 C 1.54889 * 110.75748 * 298.54427 * 9 7 2 12 12 C 1.54272 * 104.19449 * 203.74410 * 11 9 7 13 13 C 1.53874 * 106.59702 * 23.61391 * 12 11 9 14 14 H 1.08998 * 110.03081 * 240.66241 * 13 12 11 15 15 N 1.46503 * 110.02956 * 119.28627 * 13 12 11 16 16 C 1.34766 * 120.00379 * 87.08824 * 15 13 12 17 17 O 1.21591 * 120.00174 * 0.02562 * 16 15 13 18 18 N 1.34780 * 120.00282 * 179.97438 * 16 15 13 19 19 C 1.47426 * 125.64645 * 0.02598 * 18 16 15 20 20 C 1.54912 * 104.83261 * 203.86243 * 19 18 16 21 21 C 1.55155 * 101.57968 * 322.99067 * 20 19 18 22 22 C 1.47024 * 125.64847 * 179.71561 * 18 16 15 23 23 H 1.09002 * 109.88101 * 59.79072 * 22 18 16 24 24 C 1.50702 * 109.88340 * 298.62314 * 22 18 16 25 25 C 1.34510 * 125.78779 * 139.71672 * 24 22 18 26 26 C 1.41378 * 106.83959 * 179.89401 * 25 24 22 27 27 C 1.34510 * 106.84366 * 0.36831 * 26 25 24 28 28 O 1.34302 * 125.78902 * 320.03075 * 24 22 18 29 29 C 1.54266 * 106.64398 * 359.97351 * 13 12 11 30 30 H 0.97006 * 120.00056 * 0.02562 * 1 2 3 31 31 H 1.09006 * 110.48332 * 85.06887 * 11 9 7 32 32 H 1.08997 * 110.48695 * 322.42345 * 11 9 7 33 33 H 1.08997 * 110.03230 * 264.32423 * 12 11 9 34 34 H 1.09002 * 110.02633 * 142.89678 * 12 11 9 35 35 H 0.97002 * 119.99503 * 267.08791 * 15 13 12 36 36 H 1.09002 * 110.36518 * 322.69812 * 19 18 16 37 37 H 1.08995 * 110.36673 * 84.90922 * 19 18 16 38 38 H 1.08997 * 111.00012 * 81.06132 * 20 19 18 39 39 H 1.08992 * 111.00287 * 204.87830 * 20 19 18 40 40 H 1.08999 * 110.71965 * 153.86238 * 21 20 19 41 41 H 1.08996 * 110.72196 * 277.13505 * 21 20 19 42 42 H 1.08004 * 126.57743 * 0.02762 * 25 24 22 43 43 H 1.08003 * 126.58071 * 180.12511 * 26 25 24 44 44 H 1.07997 * 125.79547 * 179.79216 * 27 26 25 45 45 H 1.08992 * 110.48695 * 95.09241 * 29 13 12 46 46 H 1.08992 * 110.48634 * 217.74185 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6406 -2.5911 -0.8990 11 6 0.3776 -2.6287 1.2721 12 6 0.1830 -4.1494 1.4441 13 6 1.3581 -4.8278 0.7183 14 1 0.9841 -5.4664 -0.0819 15 7 2.1434 -5.6209 1.6673 16 6 1.7970 -6.8970 1.9278 17 8 0.8329 -7.3903 1.3749 18 7 2.5198 -7.6268 2.8004 19 6 3.7068 -7.1566 3.5376 20 6 4.4948 -8.4447 3.8834 21 6 3.3450 -9.4420 4.1841 22 6 2.2512 -9.0217 3.1797 23 1 2.2929 -9.6603 2.2974 24 6 0.8942 -9.1247 3.8269 25 6 0.0028 -10.1131 3.6322 26 6 -1.1233 -9.8125 4.4324 27 6 -0.8562 -8.6543 5.0619 28 8 0.3672 -8.2422 4.6913 29 6 2.2261 -3.6965 0.1296 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5834 -2.1351 1.1271 32 1 0.8961 -2.2105 2.1348 33 1 -0.7612 -4.4581 0.9956 34 1 0.1971 -4.4102 2.5024 35 1 2.9127 -5.2276 2.1081 36 1 4.3088 -6.5009 2.9084 37 1 3.4070 -6.6373 4.4478 38 1 5.0895 -8.7788 3.0332 39 1 5.1224 -8.2947 4.7617 40 1 3.6653 -10.4672 3.9986 41 1 2.9924 -9.3265 5.2090 42 1 0.1250 -10.9726 2.9897 43 1 -2.0266 -10.3983 4.5184 44 1 -1.5137 -8.1425 5.7491 45 1 3.0434 -3.4507 0.8074 46 1 2.6131 -3.9823 -0.8484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331553496.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:37 Heat of formation + Delta-G solvation = -36.834768 kcal Electronic energy + Delta-G solvation = -27211.968180 eV Core-core repulsion = 23488.025274 eV Total energy + Delta-G solvation = -3723.942906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.50909 -41.36788 -39.38422 -38.13609 -35.33925 -34.10265 -33.83552 -32.30801 -31.94768 -29.96774 -28.62876 -28.33139 -25.88396 -24.59113 -22.72604 -22.43279 -22.06793 -21.45678 -20.90899 -20.49155 -19.21564 -18.46869 -18.11562 -17.57955 -16.88400 -16.64633 -16.61419 -16.37170 -15.79172 -15.46031 -15.08875 -14.54778 -14.32454 -14.28379 -14.03960 -13.82033 -13.72719 -13.64496 -13.54787 -13.22207 -13.01310 -12.76316 -12.59121 -12.43480 -12.38400 -12.20212 -12.06463 -11.72045 -11.67354 -11.40369 -11.25530 -11.07346 -10.82512 -10.82020 -10.45003 -10.18737 -9.67604 -9.30782 -8.08475 -6.19365 0.77823 1.44562 1.45808 1.50239 1.53437 1.76308 2.02389 2.25568 2.46051 3.02323 3.22092 3.58063 3.61036 3.75244 3.91473 4.02333 4.09460 4.15613 4.18223 4.22670 4.29404 4.52996 4.65747 4.70327 4.75156 4.79889 4.88174 4.91671 4.95020 4.99314 5.01286 5.04373 5.10004 5.14547 5.16334 5.24469 5.30007 5.34756 5.40237 5.60807 5.66252 5.68903 5.91954 5.98380 6.00512 6.25504 6.37620 6.90550 6.97663 7.48344 7.55738 8.99824 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.003008 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.875259 B = 9306.100387 C =10021.773691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.041 3.959 10 H 0.000 1.000 11 C -0.087 4.087 12 C -0.123 4.123 13 C 0.171 3.829 14 H 0.067 0.933 15 N -0.721 5.721 16 C 0.716 3.284 17 O -0.629 6.629 18 N -0.633 5.633 19 C 0.086 3.914 20 C -0.116 4.116 21 C -0.114 4.114 22 C 0.228 3.772 23 H 0.101 0.899 24 C -0.025 4.025 25 C -0.219 4.219 26 C -0.223 4.223 27 C -0.057 4.057 28 O -0.189 6.189 29 C -0.103 4.103 30 H 0.259 0.741 31 H 0.038 0.962 32 H 0.037 0.963 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.406 0.594 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.079 0.921 42 H 0.158 0.842 43 H 0.167 0.833 44 H 0.227 0.773 45 H 0.074 0.926 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.934 -21.103 12.602 26.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.189 4.189 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.567 4.567 8 H 0.079 0.921 9 C 0.022 3.978 10 H 0.019 0.981 11 C -0.125 4.125 12 C -0.162 4.162 13 C 0.065 3.935 14 H 0.085 0.915 15 N -0.376 5.376 16 C 0.418 3.582 17 O -0.510 6.510 18 N -0.371 5.371 19 C -0.036 4.036 20 C -0.154 4.154 21 C -0.152 4.152 22 C 0.123 3.877 23 H 0.118 0.882 24 C -0.076 4.076 25 C -0.239 4.239 26 C -0.242 4.242 27 C -0.124 4.124 28 O -0.086 6.086 29 C -0.141 4.141 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.242 0.758 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.097 0.903 42 H 0.176 0.824 43 H 0.184 0.816 44 H 0.243 0.757 45 H 0.093 0.907 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.208 -21.016 12.227 25.662 hybrid contribution -0.409 1.232 -0.092 1.301 sum 7.799 -19.784 12.134 24.484 Atomic orbital electron populations 1.70107 1.07396 1.27183 1.51316 1.25803 0.95616 1.02568 0.94879 0.85656 0.78318 0.78980 0.78951 1.19566 1.21509 1.19328 1.21447 0.93177 0.91512 1.50599 0.92102 1.19540 0.92783 0.92376 0.93066 0.98141 1.22063 0.99664 0.92064 0.98721 1.22520 0.97715 0.96650 0.99293 1.21341 0.91155 0.91099 0.89858 0.91453 1.45239 1.33958 1.10688 1.47758 1.15676 0.81753 0.81332 0.79457 1.90888 1.31056 1.72428 1.56605 1.47702 1.31531 1.13332 1.44522 1.22638 0.85423 0.99101 0.96430 1.22789 0.96438 0.92016 1.04144 1.22754 0.92802 1.01829 0.97787 1.20251 0.87594 0.82957 0.96857 0.88166 1.23070 0.98576 0.90448 0.95546 1.21834 0.94480 1.02591 1.04981 1.22126 1.01360 0.99306 1.01445 1.24672 0.85798 0.97822 1.04130 1.83988 1.29118 1.45537 1.49919 1.22556 0.98005 0.93599 0.99988 0.93219 0.94351 0.94370 0.93514 0.92832 0.75762 0.89365 0.91259 0.89033 0.86881 0.86680 0.90270 0.82388 0.81560 0.75714 0.90707 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.01 12.02 21.45 0.26 -53.75 16 2 C 0.01 0.55 5.33 84.65 0.45 1.01 16 3 Si 0.96 43.17 29.54 68.60 2.03 45.20 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.53 -28.59 8.54 25.60 0.22 -28.38 16 8 H 0.06 3.14 7.78 -2.91 -0.02 3.12 16 9 C 0.04 2.07 2.82 -10.22 -0.03 2.04 16 10 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 11 C -0.09 -4.21 5.57 31.67 0.18 -4.03 16 12 C -0.12 -5.17 6.59 31.32 0.21 -4.97 16 13 C 0.17 6.53 3.23 45.71 0.15 6.68 16 14 H 0.07 2.77 7.58 -2.39 -0.02 2.76 16 15 N -0.72 -23.08 4.95 -454.35 -2.25 -25.33 16 16 C 0.72 24.27 8.27 179.06 1.48 25.75 16 17 O -0.63 -26.92 15.84 -4.00 -0.06 -26.98 16 18 N -0.63 -15.70 3.06 -810.01 -2.48 -18.18 16 19 C 0.09 1.36 6.57 86.86 0.57 1.93 16 20 C -0.12 -1.04 7.09 31.99 0.23 -0.82 16 21 C -0.11 -1.34 6.47 31.78 0.21 -1.13 16 22 C 0.23 4.87 3.31 44.60 0.15 5.01 16 23 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 24 C -0.03 -0.66 5.25 24.83 0.13 -0.53 16 25 C -0.22 -5.46 10.80 22.19 0.24 -5.22 16 26 C -0.22 -5.17 10.91 22.19 0.24 -4.93 16 27 C -0.06 -1.36 12.09 66.97 0.81 -0.55 16 28 O -0.19 -5.44 10.65 -2.51 -0.03 -5.47 16 29 C -0.10 -4.09 5.95 31.70 0.19 -3.90 16 30 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 31 H 0.04 2.06 7.38 -2.38 -0.02 2.05 16 32 H 0.04 1.87 8.04 -2.39 -0.02 1.85 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 2.18 7.92 -2.39 -0.02 2.16 16 35 H 0.41 10.69 6.83 -92.71 -0.63 10.05 16 36 H 0.09 1.21 7.31 -2.39 -0.02 1.19 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.11 0.52 8.14 -2.39 -0.02 0.51 16 40 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.08 1.01 7.84 -2.39 -0.02 0.99 16 42 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 43 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 44 H 0.23 3.62 8.06 -2.91 -0.02 3.59 16 45 H 0.07 2.74 7.63 -2.39 -0.02 2.72 16 46 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -74.19 372.10 3.22 -70.97 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.34 Total: 25.57 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 5.41 Total: -12.03 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -4.47 Total: -97.25 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -0.09 Total: -32.45 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -74.19 3.22 -70.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331553496.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.133 kcal (2) G-P(sol) polarization free energy of solvation -74.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds