Wall clock time and date at job start Tue Mar 31 2020 12:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00228 * 2 1 4 4 H 1.48497 * 109.47160 * 240.00252 * 3 2 1 5 5 H 1.48499 * 109.46798 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47234 * 119.99496 * 3 2 1 7 7 C 1.37877 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00194 * 0.02562 * 7 2 1 10 10 C 1.53042 * 109.45979 * 180.02562 * 9 7 2 11 11 C 1.53198 * 109.31301 * 178.61340 * 10 9 7 12 12 N 1.46921 * 108.77328 * 54.63261 * 11 10 9 13 13 C 1.34783 * 120.62924 * 126.37091 * 12 11 10 14 14 O 1.21589 * 119.99722 * 185.22260 * 13 12 11 15 15 N 1.34774 * 119.99858 * 5.22906 * 13 12 11 16 16 C 1.46495 * 119.99740 * 174.98417 * 15 13 12 17 17 H 1.08999 * 109.68269 * 34.48018 * 16 15 13 18 18 C 1.53405 * 109.68278 * 154.99479 * 16 15 13 19 19 C 1.53123 * 109.41535 * 169.31835 * 18 16 15 20 20 C 1.53328 * 109.53646 * 290.00033 * 19 18 16 21 21 C 1.50937 * 108.42773 * 50.03709 * 20 19 18 22 22 O 1.33833 * 127.79755 * 163.22939 * 21 20 19 23 23 C 1.34521 * 109.41330 * 180.15305 * 22 21 20 24 24 C 1.34771 * 108.48646 * 359.96244 * 23 22 21 25 25 C 1.34890 * 123.89749 * 343.61830 * 21 20 19 26 26 C 1.46927 * 118.73949 * 306.64241 * 12 11 10 27 27 C 1.52760 * 109.00614 * 53.31386 * 26 12 11 28 28 H 0.96993 * 120.00280 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.45119 * 299.96166 * 9 7 2 30 30 H 1.09001 * 109.50088 * 58.66207 * 10 9 7 31 31 H 1.09000 * 109.49984 * 298.56276 * 10 9 7 32 32 H 1.09003 * 109.58435 * 294.84323 * 11 10 9 33 33 H 1.08994 * 109.58597 * 174.42101 * 11 10 9 34 34 H 0.97002 * 120.00041 * 354.97293 * 15 13 12 35 35 H 1.09001 * 109.48254 * 49.33750 * 18 16 15 36 36 H 1.09004 * 109.49177 * 289.30937 * 18 16 15 37 37 H 1.09006 * 109.45879 * 169.97551 * 19 18 16 38 38 H 1.09008 * 109.44829 * 50.01534 * 19 18 16 39 39 H 1.09003 * 109.67088 * 290.30703 * 20 19 18 40 40 H 1.08999 * 109.70758 * 169.79516 * 20 19 18 41 41 H 1.07999 * 125.75495 * 179.97438 * 23 22 21 42 42 H 1.07998 * 126.67860 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.58497 * 173.14744 * 26 12 11 44 44 H 1.08995 * 109.58910 * 293.56742 * 26 12 11 45 45 H 1.09003 * 109.56164 * 185.55098 * 27 26 12 46 46 H 1.08995 * 109.36057 * 65.50298 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2458 -3.6622 0.0018 11 6 1.4767 -4.9867 0.0368 12 7 0.5231 -5.0094 -1.0807 13 6 0.5134 -6.0357 -1.9544 14 8 -0.2140 -5.9983 -2.9279 15 7 1.3100 -7.1032 -1.7488 16 6 1.2205 -8.2655 -2.6360 17 1 0.9939 -7.9366 -3.6502 18 6 2.5520 -9.0273 -2.6254 19 6 2.3740 -10.3731 -3.3337 20 6 1.4999 -11.2936 -2.4738 21 6 0.2577 -10.5351 -2.0740 22 8 -0.8900 -11.0330 -1.5986 23 6 -1.7522 -10.0267 -1.3672 24 6 -1.1523 -8.8657 -1.6968 25 6 0.1362 -9.1941 -2.1552 26 6 -0.4157 -3.8892 -1.2312 27 6 0.3709 -2.5798 -1.2488 28 1 -0.4850 0.8400 -0.0004 29 1 0.6246 -2.5567 0.8907 30 1 2.8877 -3.5910 0.8799 31 1 2.8563 -3.6198 -0.9002 32 1 0.9366 -5.0708 0.9799 33 1 2.1752 -5.8175 -0.0619 34 1 1.9427 -7.1018 -1.0135 35 1 2.8653 -9.1974 -1.5953 36 1 3.3106 -8.4411 -3.1440 37 1 3.3495 -10.8357 -3.4849 38 1 1.8939 -10.2143 -4.2994 39 1 2.0497 -11.5935 -1.5817 40 1 1.2214 -12.1775 -3.0476 41 1 -2.7557 -10.1314 -0.9820 42 1 -1.5795 -7.8763 -1.6271 43 1 -0.9653 -3.9963 -2.1664 44 1 -1.1133 -3.8820 -0.3938 45 1 -0.3216 -1.7382 -1.2610 46 1 0.9990 -2.5475 -2.1391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335838434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:33 Heat of formation + Delta-G solvation = -20.669525 kcal Electronic energy + Delta-G solvation = -27312.953125 eV Core-core repulsion = 23589.711196 eV Total energy + Delta-G solvation = -3723.241929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.75574 -39.97893 -37.77629 -36.60543 -34.12264 -33.48419 -32.51493 -31.04135 -30.28206 -29.49516 -28.38051 -26.07047 -23.78422 -22.93669 -22.45841 -22.15362 -21.35543 -20.14353 -19.26351 -18.72994 -17.73515 -17.15729 -16.48704 -16.28927 -15.72770 -15.20221 -14.81754 -14.64479 -14.58413 -14.13385 -13.98488 -13.54108 -13.23307 -13.06449 -12.90817 -12.71568 -12.55556 -12.42669 -12.36576 -12.13539 -11.80550 -11.48325 -11.23658 -11.12189 -10.95924 -10.90428 -10.67422 -10.41873 -10.04344 -9.77965 -9.59227 -9.54297 -9.16889 -9.00161 -8.88776 -8.35439 -8.34433 -7.87169 -6.00636 -4.07461 1.66398 2.54222 2.87200 3.13755 3.30583 3.35831 3.37968 3.59806 4.20677 4.40533 4.41983 4.48886 4.64446 4.78856 4.91109 5.09777 5.20886 5.23705 5.28987 5.32701 5.41189 5.54131 5.59721 5.66184 5.78035 5.84285 5.92099 5.98145 6.07242 6.08794 6.12302 6.28817 6.44604 6.51944 6.52466 6.63326 6.72519 6.83948 7.00059 7.12166 7.17714 7.26903 7.52254 7.72381 7.94972 8.07759 8.35240 8.41686 8.95553 8.99792 9.57462 11.04738 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028511 B = 0.002831 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.857676 B = 9888.958585 C =10373.313569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.051 3.949 10 C -0.124 4.124 11 C 0.114 3.886 12 N -0.618 5.618 13 C 0.707 3.293 14 O -0.598 6.598 15 N -0.743 5.743 16 C 0.232 3.768 17 H 0.097 0.903 18 C -0.128 4.128 19 C -0.111 4.111 20 C -0.035 4.035 21 C -0.019 4.019 22 O -0.174 6.174 23 C -0.059 4.059 24 C -0.176 4.176 25 C -0.184 4.184 26 C 0.127 3.873 27 C -0.124 4.124 28 H 0.261 0.739 29 H 0.027 0.973 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.394 0.606 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.201 0.799 42 H 0.147 0.853 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.103 0.897 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.829 -22.252 -2.601 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.032 3.968 10 C -0.162 4.162 11 C -0.009 4.009 12 N -0.354 5.354 13 C 0.408 3.592 14 O -0.477 6.477 15 N -0.400 5.400 16 C 0.126 3.874 17 H 0.115 0.885 18 C -0.167 4.167 19 C -0.149 4.149 20 C -0.072 4.072 21 C -0.070 4.070 22 O -0.070 6.070 23 C -0.126 4.126 24 C -0.195 4.195 25 C -0.187 4.187 26 C 0.005 3.995 27 C -0.162 4.162 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.231 0.769 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.217 0.783 42 H 0.165 0.835 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.121 0.879 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.067 -22.364 -3.250 22.693 hybrid contribution 0.556 1.266 0.530 1.481 sum 2.623 -21.098 -2.720 21.433 Atomic orbital electron populations 1.69831 1.05848 1.26591 1.50616 1.24960 0.94859 0.99040 0.95084 0.86681 0.79627 0.83269 0.78542 1.20354 1.21308 1.20349 1.21150 0.92812 0.90641 1.50645 0.92835 1.18605 0.92555 0.91472 0.94158 1.22016 0.98952 0.94380 1.00853 1.21694 0.91174 0.98863 0.89214 1.47449 1.38211 1.21412 1.28359 1.15855 0.80709 0.79825 0.82772 1.90866 1.45631 1.81166 1.30054 1.45265 1.43234 1.16272 1.35217 1.19053 0.91147 0.82802 0.94357 0.88472 1.21914 0.96627 0.96157 1.01951 1.21536 0.99889 0.94490 0.98966 1.20195 0.89052 0.97537 1.00395 1.22294 0.88124 0.92848 1.03765 1.83871 1.21692 1.36799 1.64687 1.24044 0.96052 0.85099 1.07370 1.21557 0.94743 0.99469 1.03715 1.20619 0.97216 0.93662 1.07171 1.21664 0.90956 0.85722 1.01159 1.21941 1.00112 0.94976 0.99199 0.92893 0.95530 0.92212 0.92917 0.92020 0.92348 0.76914 0.90993 0.90263 0.89924 0.90797 0.89664 0.89848 0.78254 0.83530 0.90576 0.92692 0.87882 0.94396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.85 11.31 55.43 0.63 -24.22 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -13.71 8.56 -34.44 -0.29 -14.01 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 9 C 0.05 1.20 2.06 -91.73 -0.19 1.01 16 10 C -0.12 -2.39 5.30 -26.61 -0.14 -2.53 16 11 C 0.11 1.84 6.39 -3.71 -0.02 1.81 16 12 N -0.62 -11.30 2.98 -178.76 -0.53 -11.83 16 13 C 0.71 12.75 7.57 -86.91 -0.66 12.09 16 14 O -0.60 -12.74 15.16 5.29 0.08 -12.66 16 15 N -0.74 -10.35 4.93 -59.64 -0.29 -10.65 16 16 C 0.23 2.90 2.85 -68.91 -0.20 2.70 16 17 H 0.10 1.42 7.51 -51.93 -0.39 1.03 16 18 C -0.13 -1.08 5.41 -26.46 -0.14 -1.23 16 19 C -0.11 -0.74 5.89 -26.50 -0.16 -0.90 16 20 C -0.03 -0.26 6.30 -27.60 -0.17 -0.43 16 21 C -0.02 -0.22 7.22 -35.38 -0.26 -0.47 16 22 O -0.17 -2.13 10.65 6.36 0.07 -2.06 16 23 C -0.06 -0.69 12.10 29.50 0.36 -0.33 16 24 C -0.18 -2.47 10.42 -39.90 -0.42 -2.89 16 25 C -0.18 -2.41 5.63 -104.93 -0.59 -3.01 16 26 C 0.13 2.59 6.41 -3.93 -0.03 2.56 16 27 C -0.12 -2.89 5.14 -26.84 -0.14 -3.03 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.75 5.65 -51.93 -0.29 0.46 16 34 H 0.39 4.68 6.09 -40.82 -0.25 4.44 16 35 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.53 8.11 -51.92 -0.42 0.11 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.20 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.15 2.33 7.48 -52.49 -0.39 1.94 16 43 H 0.08 1.60 6.99 -51.93 -0.36 1.23 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.10 2.68 6.04 -51.93 -0.31 2.37 16 46 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 359.94 15.07 5.42 5.42 Total: -1.00 -31.61 359.94 -9.82 -41.43 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.03 Total: 5.66 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -3.14 Total: -7.06 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.20 Total: -46.70 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.15 Total: -14.73 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.61 -9.82 -41.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335838434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.758 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds