Wall clock time and date at job start Tue Mar 31 2020 12:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00228 * 2 1 4 4 H 1.48497 * 109.47160 * 240.00252 * 3 2 1 5 5 H 1.48499 * 109.46798 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47234 * 119.99496 * 3 2 1 7 7 C 1.37877 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00194 * 0.02562 * 7 2 1 10 10 C 1.53042 * 109.45979 * 180.02562 * 9 7 2 11 11 C 1.53198 * 109.31301 * 178.61340 * 10 9 7 12 12 N 1.46921 * 108.77328 * 54.63261 * 11 10 9 13 13 C 1.34783 * 120.62924 * 126.37091 * 12 11 10 14 14 O 1.21589 * 119.99722 * 185.22260 * 13 12 11 15 15 N 1.34774 * 119.99858 * 5.22906 * 13 12 11 16 16 C 1.46495 * 119.99740 * 174.98417 * 15 13 12 17 17 H 1.08999 * 109.68269 * 34.48018 * 16 15 13 18 18 C 1.53405 * 109.68278 * 154.99479 * 16 15 13 19 19 C 1.53123 * 109.41535 * 169.31835 * 18 16 15 20 20 C 1.53328 * 109.53646 * 290.00033 * 19 18 16 21 21 C 1.50937 * 108.42773 * 50.03709 * 20 19 18 22 22 O 1.33833 * 127.79755 * 163.22939 * 21 20 19 23 23 C 1.34521 * 109.41330 * 180.15305 * 22 21 20 24 24 C 1.34771 * 108.48646 * 359.96244 * 23 22 21 25 25 C 1.34890 * 123.89749 * 343.61830 * 21 20 19 26 26 C 1.46927 * 118.73949 * 306.64241 * 12 11 10 27 27 C 1.52760 * 109.00614 * 53.31386 * 26 12 11 28 28 H 0.96993 * 120.00280 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.45119 * 299.96166 * 9 7 2 30 30 H 1.09001 * 109.50088 * 58.66207 * 10 9 7 31 31 H 1.09000 * 109.49984 * 298.56276 * 10 9 7 32 32 H 1.09003 * 109.58435 * 294.84323 * 11 10 9 33 33 H 1.08994 * 109.58597 * 174.42101 * 11 10 9 34 34 H 0.97002 * 120.00041 * 354.97293 * 15 13 12 35 35 H 1.09001 * 109.48254 * 49.33750 * 18 16 15 36 36 H 1.09004 * 109.49177 * 289.30937 * 18 16 15 37 37 H 1.09006 * 109.45879 * 169.97551 * 19 18 16 38 38 H 1.09008 * 109.44829 * 50.01534 * 19 18 16 39 39 H 1.09003 * 109.67088 * 290.30703 * 20 19 18 40 40 H 1.08999 * 109.70758 * 169.79516 * 20 19 18 41 41 H 1.07999 * 125.75495 * 179.97438 * 23 22 21 42 42 H 1.07998 * 126.67860 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.58497 * 173.14744 * 26 12 11 44 44 H 1.08995 * 109.58910 * 293.56742 * 26 12 11 45 45 H 1.09003 * 109.56164 * 185.55098 * 27 26 12 46 46 H 1.08995 * 109.36057 * 65.50298 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2458 -3.6622 0.0018 11 6 1.4767 -4.9867 0.0368 12 7 0.5231 -5.0094 -1.0807 13 6 0.5134 -6.0357 -1.9544 14 8 -0.2140 -5.9983 -2.9279 15 7 1.3100 -7.1032 -1.7488 16 6 1.2205 -8.2655 -2.6360 17 1 0.9939 -7.9366 -3.6502 18 6 2.5520 -9.0273 -2.6254 19 6 2.3740 -10.3731 -3.3337 20 6 1.4999 -11.2936 -2.4738 21 6 0.2577 -10.5351 -2.0740 22 8 -0.8900 -11.0330 -1.5986 23 6 -1.7522 -10.0267 -1.3672 24 6 -1.1523 -8.8657 -1.6968 25 6 0.1362 -9.1941 -2.1552 26 6 -0.4157 -3.8892 -1.2312 27 6 0.3709 -2.5798 -1.2488 28 1 -0.4850 0.8400 -0.0004 29 1 0.6246 -2.5567 0.8907 30 1 2.8877 -3.5910 0.8799 31 1 2.8563 -3.6198 -0.9002 32 1 0.9366 -5.0708 0.9799 33 1 2.1752 -5.8175 -0.0619 34 1 1.9427 -7.1018 -1.0135 35 1 2.8653 -9.1974 -1.5953 36 1 3.3106 -8.4411 -3.1440 37 1 3.3495 -10.8357 -3.4849 38 1 1.8939 -10.2143 -4.2994 39 1 2.0497 -11.5935 -1.5817 40 1 1.2214 -12.1775 -3.0476 41 1 -2.7557 -10.1314 -0.9820 42 1 -1.5795 -7.8763 -1.6271 43 1 -0.9653 -3.9963 -2.1664 44 1 -1.1133 -3.8820 -0.3938 45 1 -0.3216 -1.7382 -1.2610 46 1 0.9990 -2.5475 -2.1391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335838434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:32 Heat of formation + Delta-G solvation = -39.243720 kcal Electronic energy + Delta-G solvation = -27313.758563 eV Core-core repulsion = 23589.711196 eV Total energy + Delta-G solvation = -3724.047366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.67198 -41.39232 -38.95378 -37.93895 -35.46871 -35.02865 -33.58948 -32.80103 -31.80121 -30.38981 -29.37384 -27.86483 -25.02926 -24.37123 -23.70632 -23.20173 -22.39059 -21.67927 -20.44532 -19.97245 -19.04815 -18.31719 -18.19192 -17.45571 -16.91157 -16.54674 -16.43553 -15.87020 -15.39979 -15.36211 -15.20216 -14.92579 -14.64308 -14.47363 -14.28953 -14.00958 -13.84490 -13.62002 -13.44037 -13.20618 -13.04526 -12.99930 -12.79071 -12.50755 -12.22068 -12.16761 -11.93050 -11.85508 -11.63326 -11.43145 -11.29540 -10.93544 -10.79899 -10.64779 -10.40566 -10.26055 -9.40925 -9.22334 -8.07181 -6.21339 0.77500 1.42220 1.43334 1.47458 1.50536 1.87354 2.04368 2.18214 2.44067 2.96521 3.19342 3.68549 3.80793 3.84995 4.03231 4.11212 4.18779 4.22939 4.31828 4.33646 4.43064 4.50445 4.59027 4.59633 4.62993 4.71569 4.87100 4.89701 4.96417 4.97085 5.00329 5.13840 5.18987 5.22012 5.23604 5.31006 5.33443 5.46432 5.50254 5.54463 5.62858 5.66025 5.97969 6.07458 6.11955 6.20127 6.38415 6.90116 7.02087 7.46780 7.59314 8.96162 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028511 B = 0.002831 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.857676 B = 9888.958585 C =10373.313569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.533 4.533 8 H 0.053 0.947 9 C 0.047 3.953 10 C -0.115 4.115 11 C 0.118 3.882 12 N -0.622 5.622 13 C 0.705 3.295 14 O -0.636 6.636 15 N -0.725 5.725 16 C 0.229 3.771 17 H 0.068 0.932 18 C -0.122 4.122 19 C -0.106 4.106 20 C -0.035 4.035 21 C -0.010 4.010 22 O -0.178 6.178 23 C -0.049 4.049 24 C -0.212 4.212 25 C -0.211 4.211 26 C 0.140 3.860 27 C -0.111 4.111 28 H 0.260 0.740 29 H 0.003 0.997 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.407 0.593 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.065 0.935 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.231 0.769 42 H 0.119 0.881 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.092 -24.912 -1.962 25.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.571 4.571 8 H 0.072 0.928 9 C 0.028 3.972 10 C -0.153 4.153 11 C -0.004 4.004 12 N -0.358 5.358 13 C 0.406 3.594 14 O -0.518 6.518 15 N -0.382 5.382 16 C 0.124 3.876 17 H 0.086 0.914 18 C -0.159 4.159 19 C -0.144 4.144 20 C -0.071 4.071 21 C -0.061 4.061 22 O -0.074 6.074 23 C -0.115 4.115 24 C -0.231 4.231 25 C -0.214 4.214 26 C 0.017 3.983 27 C -0.150 4.150 28 H 0.069 0.931 29 H 0.021 0.979 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.246 0.754 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.083 0.917 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.247 0.753 42 H 0.137 0.863 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 4.375 -25.063 -2.588 25.573 hybrid contribution -0.191 2.070 0.312 2.103 sum 4.184 -22.992 -2.276 23.480 Atomic orbital electron populations 1.69972 1.07100 1.27147 1.51349 1.25724 0.95652 1.02311 0.94953 0.85723 0.78442 0.79404 0.78742 1.20069 1.21222 1.19402 1.21566 0.93084 0.92141 1.50336 0.92834 1.18580 0.93090 0.92593 0.92898 1.21869 0.98116 0.94147 1.01209 1.21790 0.91219 0.98545 0.88840 1.47389 1.38331 1.20937 1.29147 1.16001 0.80813 0.80454 0.82096 1.90837 1.47313 1.81972 1.31701 1.45149 1.42058 1.15441 1.35554 1.19225 0.93662 0.82377 0.92347 0.91439 1.21933 0.93986 0.96660 1.03370 1.21580 1.01368 0.93418 0.98055 1.20465 0.87291 0.97720 1.01642 1.23033 0.88706 0.92606 1.01796 1.83904 1.22082 1.36823 1.64617 1.24523 0.96873 0.84212 1.05904 1.21527 0.96177 0.99132 1.06302 1.20727 0.97102 0.94828 1.08739 1.21298 0.90977 0.85310 1.00743 1.21700 0.99357 0.95560 0.98378 0.93070 0.97861 0.90695 0.93569 0.90975 0.88192 0.75422 0.89442 0.89431 0.86594 0.91655 0.87466 0.88081 0.75273 0.86317 0.91705 0.92365 0.90951 0.96195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.62 11.31 21.45 0.24 -52.38 16 2 C 0.01 0.67 5.30 84.65 0.45 1.12 16 3 Si 0.95 43.42 29.54 68.60 2.03 45.45 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.53 -28.80 8.56 25.60 0.22 -28.58 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 9 C 0.05 2.27 2.06 -11.52 -0.02 2.25 16 10 C -0.12 -4.33 5.30 30.67 0.16 -4.17 16 11 C 0.12 3.62 6.39 86.37 0.55 4.17 16 12 N -0.62 -22.79 2.98 -837.74 -2.50 -25.28 16 13 C 0.70 25.66 7.57 179.05 1.35 27.02 16 14 O -0.64 -28.25 15.16 -4.00 -0.06 -28.31 16 15 N -0.72 -19.47 4.93 -460.85 -2.27 -21.75 16 16 C 0.23 5.55 2.85 44.36 0.13 5.67 16 17 H 0.07 2.03 7.51 -2.39 -0.02 2.01 16 18 C -0.12 -1.69 5.41 30.77 0.17 -1.52 16 19 C -0.11 -1.04 5.89 30.75 0.18 -0.86 16 20 C -0.03 -0.38 6.30 30.03 0.19 -0.19 16 21 C -0.01 -0.21 7.22 24.99 0.18 -0.03 16 22 O -0.18 -4.01 10.65 -0.16 0.00 -4.01 16 23 C -0.05 -1.10 12.10 67.02 0.81 -0.28 16 24 C -0.21 -6.07 10.42 22.06 0.23 -5.84 16 25 C -0.21 -5.41 5.63 -20.06 -0.11 -5.52 16 26 C 0.14 5.93 6.41 86.22 0.55 6.49 16 27 C -0.11 -5.41 5.14 30.53 0.16 -5.26 16 28 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.10 2.23 5.65 -2.39 -0.01 2.22 16 34 H 0.41 8.60 6.09 -92.71 -0.56 8.04 16 35 H 0.09 0.98 8.10 -2.39 -0.02 0.96 16 36 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 38 H 0.06 0.78 8.11 -2.38 -0.02 0.76 16 39 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.23 3.39 8.06 -2.91 -0.02 3.37 16 42 H 0.12 4.04 7.48 -2.91 -0.02 4.02 16 43 H 0.06 2.88 6.99 -2.39 -0.02 2.86 16 44 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.07 3.97 6.04 -2.39 -0.01 3.96 16 46 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -72.28 359.94 3.06 -69.23 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.42 Total: 22.60 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 5.20 Total: -5.54 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -4.53 Total: -99.41 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -0.06 Total: -32.32 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -72.28 3.06 -69.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335838434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.983 kcal (2) G-P(sol) polarization free energy of solvation -72.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds