Wall clock time and date at job start Tue Mar 31 2020 12:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86812 * 120.00298 * 2 1 4 4 H 1.48499 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46559 * 300.00135 * 3 2 1 6 6 H 1.48496 * 109.46768 * 59.99646 * 3 2 1 7 7 C 1.37879 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00424 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99524 * 0.02562 * 7 2 1 10 10 C 1.53040 * 109.45848 * 179.97438 * 9 7 2 11 11 C 1.53193 * 109.31176 * 181.38542 * 10 9 7 12 12 N 1.46922 * 108.77557 * 305.36498 * 11 10 9 13 13 C 1.34774 * 120.63396 * 233.58565 * 12 11 10 14 14 O 1.21585 * 119.99740 * 5.22416 * 13 12 11 15 15 N 1.34773 * 120.00416 * 185.22688 * 13 12 11 16 16 C 1.46498 * 120.00013 * 175.09367 * 15 13 12 17 17 H 1.08997 * 109.68267 * 324.47430 * 16 15 13 18 18 C 1.53406 * 109.71317 * 203.93712 * 16 15 13 19 19 C 1.53122 * 109.41294 * 190.66476 * 18 16 15 20 20 C 1.53328 * 109.55182 * 69.98166 * 19 18 16 21 21 C 1.50934 * 108.43461 * 310.00014 * 20 19 18 22 22 O 1.33824 * 127.79972 * 196.76832 * 21 20 19 23 23 C 1.34517 * 109.41693 * 179.88447 * 22 21 20 24 24 C 1.34767 * 108.48449 * 0.02562 * 23 22 21 25 25 C 1.34888 * 123.90123 * 16.67118 * 21 20 19 26 26 C 1.46935 * 118.73768 * 53.85965 * 12 11 10 27 27 C 1.53039 * 109.46011 * 300.06569 * 9 7 2 28 28 H 0.97008 * 119.99664 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.45934 * 60.02683 * 9 7 2 30 30 H 1.08998 * 109.49693 * 61.43027 * 10 9 7 31 31 H 1.08998 * 109.52128 * 301.35025 * 10 9 7 32 32 H 1.09000 * 109.58876 * 185.57585 * 11 10 9 33 33 H 1.09001 * 109.70138 * 65.22220 * 11 10 9 34 34 H 0.97000 * 120.00131 * 355.09693 * 15 13 12 35 35 H 1.09000 * 109.48141 * 310.64437 * 18 16 15 36 36 H 1.08998 * 109.48108 * 70.68011 * 18 16 15 37 37 H 1.09001 * 109.46113 * 190.01162 * 19 18 16 38 38 H 1.09002 * 109.45907 * 309.96470 * 19 18 16 39 39 H 1.09000 * 109.65344 * 190.30945 * 20 19 18 40 40 H 1.08994 * 109.62585 * 69.67370 * 20 19 18 41 41 H 1.08007 * 125.75902 * 179.74216 * 23 22 21 42 42 H 1.08007 * 126.68015 * 179.97438 * 24 23 22 43 43 H 1.08997 * 109.58514 * 65.92553 * 26 12 11 44 44 H 1.09000 * 109.58517 * 186.35196 * 26 12 11 45 45 H 1.09003 * 109.49442 * 298.56949 * 27 9 7 46 46 H 1.09006 * 109.49554 * 58.63027 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2457 -3.6622 0.0005 11 6 1.4766 -4.9866 -0.0344 12 7 0.5222 -5.0089 1.0824 13 6 0.5112 -6.0351 1.9560 14 8 1.3562 -6.9061 1.8813 15 7 -0.4364 -6.0959 2.9124 16 6 -0.5142 -7.2638 3.7933 17 1 -0.2520 -8.1626 3.2353 18 6 -1.9373 -7.3981 4.3501 19 6 -1.9505 -8.4472 5.4655 20 6 -1.2038 -7.9041 6.6896 21 6 0.1332 -7.3710 6.2353 22 8 1.2055 -7.0970 6.9877 23 6 2.1984 -6.6423 6.2023 24 6 1.7603 -6.6224 4.9280 25 6 0.4343 -7.0904 4.9507 26 6 -0.4241 -3.8940 1.2252 27 6 0.3695 -2.5790 1.2490 28 1 -0.4850 0.8401 0.0004 29 1 0.6251 -2.5571 -0.8900 30 1 2.8556 -3.6193 0.9029 31 1 2.8886 -3.5916 -0.8768 32 1 2.1751 -5.8175 0.0652 33 1 0.9374 -5.0736 -0.9777 34 1 -1.0670 -5.3663 3.0174 35 1 -2.2632 -6.4380 4.7503 36 1 -2.6122 -7.7075 3.5521 37 1 -2.9811 -8.6730 5.7394 38 1 -1.4607 -9.3558 5.1152 39 1 -1.0522 -8.7060 7.4121 40 1 -1.7829 -7.1008 7.1450 41 1 3.1796 -6.3394 6.5371 42 1 2.3187 -6.3081 4.0586 43 1 -1.1153 -3.8912 0.3825 44 1 -0.9802 -4.0038 2.1563 45 1 0.9968 -2.5461 2.1399 46 1 -0.3226 -1.7369 1.2601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335838435.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:36 Heat of formation + Delta-G solvation = -20.925959 kcal Electronic energy + Delta-G solvation = -27494.982873 eV Core-core repulsion = 23771.729824 eV Total energy + Delta-G solvation = -3723.253049 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.66551 -39.96230 -37.74269 -36.57728 -34.07952 -33.47851 -32.47329 -31.12163 -30.03476 -29.50499 -28.37354 -26.05591 -23.77403 -22.83875 -22.40564 -22.21751 -21.27583 -20.11431 -19.22594 -18.70812 -17.65562 -17.19507 -16.39884 -16.24090 -15.73968 -15.09587 -14.83701 -14.59271 -14.58691 -14.14529 -13.94465 -13.51959 -13.15948 -13.05819 -12.83684 -12.65685 -12.62356 -12.34192 -12.31790 -12.13755 -11.62270 -11.40493 -11.31566 -11.18925 -10.97521 -10.92391 -10.60940 -10.36943 -10.15112 -9.73436 -9.55421 -9.51436 -9.14466 -8.98757 -8.90451 -8.38216 -8.25756 -7.87216 -6.03774 -4.09529 1.75302 2.63826 2.95810 3.16501 3.26654 3.35220 3.39564 3.59964 4.24101 4.40599 4.45366 4.52413 4.69655 4.83994 4.96324 5.16156 5.25379 5.27025 5.29438 5.38691 5.55857 5.58538 5.64648 5.68638 5.80434 5.94313 5.98561 6.02925 6.09358 6.18150 6.19594 6.21154 6.28410 6.48885 6.63516 6.69411 6.75437 6.89128 7.01134 7.16411 7.21728 7.24244 7.48841 7.67366 7.92718 8.03432 8.35546 8.40807 8.94167 8.99914 9.55625 11.01623 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018183 B = 0.003210 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.497746 B = 8721.313080 C = 9001.915682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.055 0.945 9 C 0.050 3.950 10 C -0.123 4.123 11 C 0.130 3.870 12 N -0.619 5.619 13 C 0.707 3.293 14 O -0.601 6.601 15 N -0.742 5.742 16 C 0.235 3.765 17 H 0.094 0.906 18 C -0.129 4.129 19 C -0.110 4.110 20 C -0.035 4.035 21 C -0.021 4.021 22 O -0.175 6.175 23 C -0.062 4.062 24 C -0.171 4.171 25 C -0.184 4.184 26 C 0.110 3.890 27 C -0.122 4.122 28 H 0.259 0.741 29 H 0.027 0.973 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.396 0.604 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.200 0.800 42 H 0.150 0.850 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.038 0.962 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.902 -14.992 11.289 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.548 4.548 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.162 4.162 11 C 0.007 3.993 12 N -0.355 5.355 13 C 0.409 3.591 14 O -0.481 6.481 15 N -0.399 5.399 16 C 0.129 3.871 17 H 0.112 0.888 18 C -0.167 4.167 19 C -0.148 4.148 20 C -0.072 4.072 21 C -0.072 4.072 22 O -0.071 6.071 23 C -0.128 4.128 24 C -0.191 4.191 25 C -0.187 4.187 26 C -0.012 4.012 27 C -0.161 4.161 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.233 0.767 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.217 0.783 42 H 0.168 0.832 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.432 -15.532 11.493 20.071 hybrid contribution 0.412 1.631 -0.089 1.684 sum -5.020 -13.901 11.404 18.668 Atomic orbital electron populations 1.69847 1.05835 1.26291 1.51165 1.24959 0.94869 0.99042 0.95121 0.86572 0.80229 0.83884 0.77537 1.19830 1.21057 1.21090 1.21263 0.92998 0.90600 1.49966 0.92671 1.18619 0.92642 0.91754 0.93880 1.22013 0.98884 0.94406 1.00879 1.21555 0.91220 0.99555 0.86958 1.47414 1.38050 1.20994 1.29025 1.15839 0.81638 0.82375 0.79288 1.90850 1.39970 1.41331 1.75949 1.45293 1.36003 1.22998 1.35592 1.19056 0.91922 0.89104 0.86980 0.88824 1.21920 0.95754 1.00334 0.98701 1.21526 1.00705 0.98681 0.93896 1.20187 0.87816 1.00576 0.98594 1.22276 0.89820 1.05678 0.89473 1.83859 1.20255 1.64921 1.38060 1.24062 0.93335 1.05792 0.89633 1.21639 0.95522 1.04155 0.97752 1.20593 0.96475 1.06926 0.94699 1.21970 0.91610 0.88042 0.99616 1.22079 0.99957 0.94437 0.99606 0.93085 0.95496 0.93028 0.92228 0.90315 0.92555 0.76703 0.90872 0.90355 0.89964 0.90874 0.89885 0.89657 0.78287 0.83185 0.92051 0.92590 0.94336 0.87922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.34 11.30 55.43 0.63 -23.72 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -13.60 8.56 -34.44 -0.29 -13.90 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.18 2.06 -91.73 -0.19 0.99 16 10 C -0.12 -2.55 5.30 -26.61 -0.14 -2.70 16 11 C 0.13 2.41 6.44 -3.71 -0.02 2.39 16 12 N -0.62 -11.25 2.97 -178.24 -0.53 -11.78 16 13 C 0.71 12.68 7.70 -86.92 -0.67 12.01 16 14 O -0.60 -12.37 14.23 5.29 0.08 -12.30 16 15 N -0.74 -10.68 4.94 -59.64 -0.29 -10.98 16 16 C 0.24 3.00 2.77 -68.90 -0.19 2.81 16 17 H 0.09 1.33 7.68 -51.93 -0.40 0.93 16 18 C -0.13 -1.12 5.40 -26.46 -0.14 -1.27 16 19 C -0.11 -0.77 5.89 -26.50 -0.16 -0.93 16 20 C -0.03 -0.28 6.30 -27.60 -0.17 -0.46 16 21 C -0.02 -0.26 7.22 -35.38 -0.26 -0.52 16 22 O -0.17 -2.33 10.64 6.39 0.07 -2.26 16 23 C -0.06 -0.81 12.10 29.50 0.36 -0.45 16 24 C -0.17 -2.65 10.11 -39.91 -0.40 -3.05 16 25 C -0.18 -2.58 5.62 -104.93 -0.59 -3.17 16 26 C 0.11 1.96 6.42 -3.49 -0.02 1.93 16 27 C -0.12 -2.69 5.17 -26.39 -0.14 -2.82 16 28 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.40 5.10 6.08 -40.82 -0.25 4.86 16 35 H 0.07 0.62 8.10 -51.93 -0.42 0.19 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.20 1.92 8.06 -52.48 -0.42 1.50 16 42 H 0.15 2.64 6.88 -52.48 -0.36 2.28 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.06 0.84 5.64 -51.93 -0.29 0.55 16 45 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.10 2.51 6.03 -51.93 -0.31 2.19 16 LS Contribution 358.36 15.07 5.40 5.40 Total: -1.00 -30.96 358.36 -9.81 -40.78 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -7.01 Total: 6.59 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -3.13 Total: -7.59 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.20 Total: -46.47 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.14 Total: -14.56 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.96 -9.81 -40.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335838435.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.851 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds