Wall clock time and date at job start Tue Mar 31 2020 12:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86812 * 120.00298 * 2 1 4 4 H 1.48499 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46559 * 300.00135 * 3 2 1 6 6 H 1.48496 * 109.46768 * 59.99646 * 3 2 1 7 7 C 1.37879 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00424 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99524 * 0.02562 * 7 2 1 10 10 C 1.53040 * 109.45848 * 179.97438 * 9 7 2 11 11 C 1.53193 * 109.31176 * 181.38542 * 10 9 7 12 12 N 1.46922 * 108.77557 * 305.36498 * 11 10 9 13 13 C 1.34774 * 120.63396 * 233.58565 * 12 11 10 14 14 O 1.21585 * 119.99740 * 5.22416 * 13 12 11 15 15 N 1.34773 * 120.00416 * 185.22688 * 13 12 11 16 16 C 1.46498 * 120.00013 * 175.09367 * 15 13 12 17 17 H 1.08997 * 109.68267 * 324.47430 * 16 15 13 18 18 C 1.53406 * 109.71317 * 203.93712 * 16 15 13 19 19 C 1.53122 * 109.41294 * 190.66476 * 18 16 15 20 20 C 1.53328 * 109.55182 * 69.98166 * 19 18 16 21 21 C 1.50934 * 108.43461 * 310.00014 * 20 19 18 22 22 O 1.33824 * 127.79972 * 196.76832 * 21 20 19 23 23 C 1.34517 * 109.41693 * 179.88447 * 22 21 20 24 24 C 1.34767 * 108.48449 * 0.02562 * 23 22 21 25 25 C 1.34888 * 123.90123 * 16.67118 * 21 20 19 26 26 C 1.46935 * 118.73768 * 53.85965 * 12 11 10 27 27 C 1.53039 * 109.46011 * 300.06569 * 9 7 2 28 28 H 0.97008 * 119.99664 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.45934 * 60.02683 * 9 7 2 30 30 H 1.08998 * 109.49693 * 61.43027 * 10 9 7 31 31 H 1.08998 * 109.52128 * 301.35025 * 10 9 7 32 32 H 1.09000 * 109.58876 * 185.57585 * 11 10 9 33 33 H 1.09001 * 109.70138 * 65.22220 * 11 10 9 34 34 H 0.97000 * 120.00131 * 355.09693 * 15 13 12 35 35 H 1.09000 * 109.48141 * 310.64437 * 18 16 15 36 36 H 1.08998 * 109.48108 * 70.68011 * 18 16 15 37 37 H 1.09001 * 109.46113 * 190.01162 * 19 18 16 38 38 H 1.09002 * 109.45907 * 309.96470 * 19 18 16 39 39 H 1.09000 * 109.65344 * 190.30945 * 20 19 18 40 40 H 1.08994 * 109.62585 * 69.67370 * 20 19 18 41 41 H 1.08007 * 125.75902 * 179.74216 * 23 22 21 42 42 H 1.08007 * 126.68015 * 179.97438 * 24 23 22 43 43 H 1.08997 * 109.58514 * 65.92553 * 26 12 11 44 44 H 1.09000 * 109.58517 * 186.35196 * 26 12 11 45 45 H 1.09003 * 109.49442 * 298.56949 * 27 9 7 46 46 H 1.09006 * 109.49554 * 58.63027 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2457 -3.6622 0.0005 11 6 1.4766 -4.9866 -0.0344 12 7 0.5222 -5.0089 1.0824 13 6 0.5112 -6.0351 1.9560 14 8 1.3562 -6.9061 1.8813 15 7 -0.4364 -6.0959 2.9124 16 6 -0.5142 -7.2638 3.7933 17 1 -0.2520 -8.1626 3.2353 18 6 -1.9373 -7.3981 4.3501 19 6 -1.9505 -8.4472 5.4655 20 6 -1.2038 -7.9041 6.6896 21 6 0.1332 -7.3710 6.2353 22 8 1.2055 -7.0970 6.9877 23 6 2.1984 -6.6423 6.2023 24 6 1.7603 -6.6224 4.9280 25 6 0.4343 -7.0904 4.9507 26 6 -0.4241 -3.8940 1.2252 27 6 0.3695 -2.5790 1.2490 28 1 -0.4850 0.8401 0.0004 29 1 0.6251 -2.5571 -0.8900 30 1 2.8556 -3.6193 0.9029 31 1 2.8886 -3.5916 -0.8768 32 1 2.1751 -5.8175 0.0652 33 1 0.9374 -5.0736 -0.9777 34 1 -1.0670 -5.3663 3.0174 35 1 -2.2632 -6.4380 4.7503 36 1 -2.6122 -7.7075 3.5521 37 1 -2.9811 -8.6730 5.7394 38 1 -1.4607 -9.3558 5.1152 39 1 -1.0522 -8.7060 7.4121 40 1 -1.7829 -7.1008 7.1450 41 1 3.1796 -6.3394 6.5371 42 1 2.3187 -6.3081 4.0586 43 1 -1.1153 -3.8912 0.3825 44 1 -0.9802 -4.0038 2.1563 45 1 0.9968 -2.5461 2.1399 46 1 -0.3226 -1.7369 1.2601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335838435.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:35 Heat of formation + Delta-G solvation = -38.546569 kcal Electronic energy + Delta-G solvation = -27495.746960 eV Core-core repulsion = 23771.729824 eV Total energy + Delta-G solvation = -3724.017136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.67015 -41.37088 -38.93757 -37.92292 -35.39732 -35.07382 -33.64157 -32.78828 -31.65498 -30.41957 -29.40056 -27.84083 -25.04919 -24.29994 -23.76272 -23.19871 -22.38706 -21.64769 -20.47160 -19.91974 -19.05742 -18.34197 -18.17437 -17.47230 -16.95568 -16.54089 -16.26406 -15.98030 -15.40891 -15.32360 -15.19824 -14.90800 -14.64690 -14.49291 -14.24120 -14.07355 -13.85178 -13.60227 -13.25983 -13.20174 -13.15462 -13.01498 -12.83134 -12.44401 -12.22473 -12.15040 -11.97524 -11.84809 -11.63611 -11.49205 -11.17621 -10.99503 -10.78300 -10.64684 -10.40848 -10.23680 -9.39523 -9.22516 -8.08522 -6.21390 0.77259 1.39108 1.42442 1.49248 1.52481 1.89711 2.04006 2.19355 2.43545 2.96185 3.17871 3.68824 3.81080 3.85390 4.05444 4.11814 4.19288 4.21757 4.32994 4.35210 4.44580 4.46555 4.57950 4.59519 4.62623 4.68904 4.86953 4.88204 4.96459 4.99032 5.00112 5.14006 5.19822 5.21315 5.24197 5.30852 5.34158 5.42757 5.51440 5.56000 5.63468 5.66570 5.98433 6.07512 6.12605 6.20106 6.39442 6.87633 7.00410 7.46126 7.60357 8.94873 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018183 B = 0.003210 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.497746 B = 8721.313080 C = 9001.915682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.019 3.981 3 Si 0.948 3.052 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.045 0.955 9 C 0.048 3.952 10 C -0.113 4.113 11 C 0.136 3.864 12 N -0.623 5.623 13 C 0.704 3.296 14 O -0.630 6.630 15 N -0.728 5.728 16 C 0.232 3.768 17 H 0.073 0.927 18 C -0.122 4.122 19 C -0.105 4.105 20 C -0.035 4.035 21 C -0.013 4.013 22 O -0.179 6.179 23 C -0.055 4.055 24 C -0.209 4.209 25 C -0.211 4.211 26 C 0.122 3.878 27 C -0.112 4.112 28 H 0.262 0.738 29 H 0.006 0.994 30 H 0.035 0.965 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.405 0.595 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.228 0.772 42 H 0.119 0.881 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.020 0.980 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.711 -15.730 12.894 21.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.180 4.180 3 Si 0.774 3.226 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.063 0.937 9 C 0.029 3.971 10 C -0.151 4.151 11 C 0.013 3.987 12 N -0.359 5.359 13 C 0.406 3.594 14 O -0.512 6.512 15 N -0.385 5.385 16 C 0.127 3.873 17 H 0.091 0.909 18 C -0.160 4.160 19 C -0.143 4.143 20 C -0.072 4.072 21 C -0.064 4.064 22 O -0.075 6.075 23 C -0.122 4.122 24 C -0.228 4.228 25 C -0.214 4.214 26 C 0.000 4.000 27 C -0.151 4.151 28 H 0.071 0.929 29 H 0.024 0.976 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.243 0.757 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.135 0.865 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.244 0.756 42 H 0.138 0.862 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.039 0.961 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.267 -16.275 13.117 22.130 hybrid contribution 1.025 1.853 -0.571 2.193 sum -6.243 -14.422 12.546 20.109 Atomic orbital electron populations 1.69945 1.06710 1.27042 1.51277 1.25613 0.95723 1.01848 0.94847 0.85667 0.78973 0.80303 0.77659 1.19849 1.20509 1.20611 1.21574 0.92833 0.92365 1.50514 0.93711 1.18581 0.92992 0.91803 0.93701 1.21859 0.98317 0.94667 1.00303 1.21435 0.91395 0.97931 0.87922 1.47398 1.38088 1.21262 1.29118 1.15984 0.81895 0.81862 0.79652 1.90828 1.41279 1.42410 1.76731 1.45250 1.34865 1.23794 1.34624 1.19268 0.94514 0.87367 0.86163 0.90864 1.21942 0.92757 1.01568 0.99742 1.21575 1.02459 0.97636 0.92597 1.20482 0.85465 1.01664 0.99576 1.23090 0.90724 1.03814 0.88807 1.83889 1.20615 1.64787 1.38226 1.24504 0.94226 1.04553 0.88900 1.21592 0.96817 1.06577 0.97824 1.20778 0.96229 1.08327 0.96070 1.21831 0.90961 0.85605 1.01651 1.21838 0.99257 0.96154 0.97856 0.92906 0.97552 0.94564 0.91785 0.90410 0.91132 0.75693 0.90035 0.88890 0.86535 0.91277 0.87986 0.87813 0.75555 0.86248 0.91190 0.89543 0.96063 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.10 11.30 21.45 0.24 -49.85 16 2 C 0.02 1.01 5.30 84.66 0.45 1.46 16 3 Si 0.95 43.09 29.54 68.60 2.03 45.12 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.53 -29.18 8.56 25.60 0.22 -28.97 16 8 H 0.04 2.47 7.74 -2.91 -0.02 2.44 16 9 C 0.05 2.32 2.06 -11.51 -0.02 2.30 16 10 C -0.11 -4.79 5.30 30.67 0.16 -4.63 16 11 C 0.14 5.09 6.44 86.36 0.56 5.65 16 12 N -0.62 -22.57 2.97 -836.08 -2.48 -25.05 16 13 C 0.70 25.37 7.70 179.06 1.38 26.75 16 14 O -0.63 -26.63 14.23 -3.98 -0.06 -26.69 16 15 N -0.73 -20.46 4.94 -460.86 -2.28 -22.74 16 16 C 0.23 5.73 2.77 44.36 0.12 5.85 16 17 H 0.07 2.10 7.68 -2.39 -0.02 2.08 16 18 C -0.12 -1.77 5.40 30.77 0.17 -1.60 16 19 C -0.10 -1.07 5.89 30.75 0.18 -0.89 16 20 C -0.04 -0.44 6.30 30.03 0.19 -0.25 16 21 C -0.01 -0.30 7.22 24.99 0.18 -0.12 16 22 O -0.18 -4.52 10.64 -0.05 0.00 -4.52 16 23 C -0.06 -1.43 12.10 67.02 0.81 -0.62 16 24 C -0.21 -6.64 10.11 22.06 0.22 -6.41 16 25 C -0.21 -5.85 5.62 -20.07 -0.11 -5.96 16 26 C 0.12 4.25 6.42 86.50 0.56 4.80 16 27 C -0.11 -5.02 5.17 30.81 0.16 -4.86 16 28 H 0.26 13.69 8.31 -92.70 -0.77 12.92 16 29 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.08 2.94 7.00 -2.39 -0.02 2.93 16 33 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.40 9.74 6.08 -92.71 -0.56 9.18 16 35 H 0.08 1.08 8.10 -2.39 -0.02 1.06 16 36 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.07 0.80 8.11 -2.39 -0.02 0.78 16 39 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.23 4.20 8.06 -2.91 -0.02 4.18 16 42 H 0.12 4.52 6.88 -2.91 -0.02 4.50 16 43 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.09 2.46 5.64 -2.39 -0.01 2.45 16 45 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.08 3.98 6.03 -2.38 -0.01 3.97 16 Total: -1.00 -69.28 358.36 3.10 -66.19 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.42 Total: 25.06 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 5.22 Total: -7.51 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -4.52 Total: -97.64 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.06 Total: -31.21 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -69.28 3.10 -66.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335838435.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.641 kcal (2) G-P(sol) polarization free energy of solvation -69.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds