Wall clock time and date at job start Tue Mar 31 2020 12:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21277 * 119.99884 * 2 1 4 4 N 1.34777 * 119.99765 * 179.72497 * 2 1 3 5 5 C 1.46502 * 119.99887 * 174.99182 * 4 2 1 6 6 H 1.08997 * 109.46728 * 34.07130 * 5 4 2 7 7 C 1.52997 * 109.46951 * 154.07410 * 5 4 2 8 8 C 1.50694 * 109.47360 * 294.99775 * 7 5 4 9 9 O 1.21284 * 120.00007 * 0.02562 * 8 7 5 10 10 N 1.34775 * 120.00111 * 180.02562 * 8 7 5 11 11 C 1.46502 * 119.99813 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46680 * 179.97438 * 11 10 8 13 13 C 1.50708 * 109.46882 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00012 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99834 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00093 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00067 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46870 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47364 * 119.99647 * 17 15 13 20 20 H 1.48497 * 109.47109 * 239.99875 * 17 15 13 21 21 C 1.50702 * 109.46791 * 274.07498 * 5 4 2 22 22 C 1.38233 * 119.99703 * 319.23270 * 21 5 4 23 23 C 1.38241 * 119.99537 * 179.77177 * 22 21 5 24 24 C 1.38235 * 119.99903 * 0.49954 * 23 22 21 25 25 C 1.50699 * 119.99856 * 179.73106 * 24 23 22 26 26 C 1.38235 * 119.99836 * 359.75014 * 24 23 22 27 27 C 1.38227 * 120.00426 * 0.02562 * 26 24 23 28 28 H 1.08997 * 109.46617 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47270 * 120.00261 * 1 2 3 30 30 H 1.09002 * 109.46810 * 240.00564 * 1 2 3 31 31 H 0.96996 * 120.00096 * 354.98405 * 4 2 1 32 32 H 1.08995 * 109.47098 * 55.00196 * 7 5 4 33 33 H 1.09000 * 109.47065 * 174.99731 * 7 5 4 34 34 H 0.96998 * 120.00271 * 359.97438 * 10 8 7 35 35 H 1.09000 * 109.47194 * 299.99254 * 11 10 8 36 36 H 1.08998 * 109.47558 * 60.00311 * 11 10 8 37 37 H 1.08994 * 109.47566 * 299.99760 * 12 11 10 38 38 H 1.08998 * 109.47130 * 60.00302 * 12 11 10 39 39 H 0.97002 * 119.99599 * 180.02562 * 16 15 13 40 40 H 1.07999 * 120.00407 * 359.97438 * 22 21 5 41 41 H 1.08000 * 120.00123 * 180.23237 * 23 22 21 42 42 H 1.09005 * 109.46946 * 270.02335 * 25 24 23 43 43 H 1.08999 * 109.47183 * 30.02042 * 25 24 23 44 44 H 1.09001 * 109.47041 * 150.02423 * 25 24 23 45 45 H 1.08005 * 119.99506 * 179.97438 * 26 24 23 46 46 H 1.07999 * 120.00438 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0056 5 6 3.6418 -1.1702 -0.1051 6 1 4.0461 -0.2928 0.3996 7 6 4.2000 -2.4365 0.5473 8 6 3.9125 -2.4083 2.0263 9 8 3.3189 -1.4681 2.5108 10 7 4.3148 -3.4278 2.8106 11 6 4.0347 -3.4005 4.2483 12 6 4.5932 -4.6668 4.9007 13 6 4.3056 -4.6386 6.3798 14 1 3.7778 -3.8010 6.8114 15 6 4.7173 -5.6814 7.1822 16 7 5.3606 -6.7012 6.6567 17 14 4.3603 -5.6468 9.0154 18 1 3.6290 -4.3994 9.3538 19 1 3.5298 -6.8225 9.3804 20 1 5.6388 -5.6905 9.7696 21 6 4.0353 -1.1390 -1.5595 22 6 3.3376 -1.8976 -2.4807 23 6 3.6956 -1.8654 -3.8156 24 6 4.7577 -1.0825 -4.2275 25 6 5.1518 -1.0520 -5.6818 26 6 5.4586 -0.3279 -3.3055 27 6 5.0978 -0.3565 -1.9714 28 1 -0.3632 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 -0.3633 -0.5138 0.8901 31 1 1.6987 -2.0052 0.0831 32 1 3.7287 -3.3126 0.1021 33 1 5.2773 -2.4829 0.3874 34 1 4.7892 -4.1799 2.4231 35 1 4.5055 -2.5241 4.6937 36 1 2.9575 -3.3549 4.4079 37 1 4.1222 -5.5431 4.4554 38 1 5.6705 -4.7129 4.7412 39 1 5.6499 -7.4350 7.2212 40 1 2.5107 -2.5130 -2.1581 41 1 3.1481 -2.4551 -4.5359 42 1 5.8879 -1.8323 -5.8752 43 1 4.2708 -1.2222 -6.3006 44 1 5.5818 -0.0794 -5.9214 45 1 6.2888 0.2835 -3.6274 46 1 5.6456 0.2327 -1.2510 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342632143.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:34 Heat of formation + Delta-G solvation = -74.428567 kcal Electronic energy + Delta-G solvation = -25872.719814 eV Core-core repulsion = 22147.146718 eV Total energy + Delta-G solvation = -3725.573096 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.48506 -39.14791 -38.90057 -35.78745 -34.78515 -32.92020 -32.82760 -31.33443 -31.10206 -29.91305 -28.88218 -27.25643 -24.86636 -23.34799 -22.93293 -21.19136 -20.93051 -20.35060 -20.01689 -17.42551 -16.88216 -16.58597 -16.26051 -16.02219 -15.36782 -15.21256 -15.14384 -14.92087 -14.62030 -14.47224 -14.03730 -13.65733 -13.61282 -13.44538 -13.29439 -12.94818 -12.73644 -12.52683 -12.34451 -12.33201 -12.20495 -11.99266 -11.59107 -11.36270 -11.23118 -11.11722 -11.07105 -10.65277 -10.37171 -9.87514 -9.82228 -9.52347 -9.27585 -9.12450 -9.06073 -8.68371 -8.57736 -8.38980 -6.12763 -4.15583 1.09419 1.22882 2.72149 2.94415 3.18289 3.26061 3.33702 3.38348 3.48560 3.69355 4.38657 4.54448 4.59238 4.67292 4.72388 4.82193 4.83812 4.98650 5.10918 5.15136 5.22500 5.24477 5.28135 5.29197 5.35074 5.44908 5.48957 5.52369 5.68403 5.76071 5.86626 5.92920 6.21787 6.30038 6.31026 6.31783 6.38548 6.54626 6.69980 6.81030 6.87755 7.47714 7.49880 7.57532 7.85547 7.96718 8.24258 8.28015 8.61116 8.90759 9.49600 10.98812 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017593 B = 0.002412 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.151044 B =11604.082041 C =12665.933593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.520 3.480 3 O -0.545 6.545 4 N -0.714 5.714 5 C 0.203 3.797 6 H 0.106 0.894 7 C -0.148 4.148 8 C 0.501 3.499 9 O -0.539 6.539 10 N -0.723 5.723 11 C 0.122 3.878 12 C 0.012 3.988 13 C -0.521 4.521 14 H 0.060 0.940 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.098 4.098 22 C -0.101 4.101 23 C -0.123 4.123 24 C -0.089 4.089 25 C -0.114 4.114 26 C -0.120 4.120 27 C -0.098 4.098 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.398 0.602 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.397 0.603 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.262 0.738 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.121 0.879 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.914 7.599 -24.593 26.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.307 3.693 3 O -0.422 6.422 4 N -0.364 5.364 5 C 0.098 3.902 6 H 0.123 0.877 7 C -0.189 4.189 8 C 0.286 3.714 9 O -0.416 6.416 10 N -0.373 5.373 11 C 0.000 4.000 12 C -0.025 4.025 13 C -0.560 4.560 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.099 4.099 22 C -0.119 4.119 23 C -0.141 4.141 24 C -0.089 4.089 25 C -0.171 4.171 26 C -0.138 4.138 27 C -0.117 4.117 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.232 0.768 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.231 0.769 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.139 0.861 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.842 8.880 -24.169 26.033 hybrid contribution -0.086 -1.055 0.926 1.406 sum -3.928 7.825 -23.242 24.837 Atomic orbital electron populations 1.21906 0.92037 1.05316 1.04087 1.20639 0.90364 0.83452 0.74875 1.90695 1.70803 1.31420 1.49253 1.45807 1.06601 1.08926 1.75115 1.19441 0.81045 0.99141 0.90622 0.87653 1.22023 1.04186 0.99092 0.93565 1.20431 0.79717 0.82941 0.88353 1.90733 1.41140 1.34049 1.75717 1.46352 1.58321 1.22299 1.10347 1.21706 1.00102 1.01305 0.76876 1.19326 0.96621 0.90890 0.95667 1.21089 1.37148 1.05460 0.92282 0.92221 1.25002 0.94938 0.95356 0.99044 1.69965 1.38777 1.08853 1.35705 0.86459 0.78089 0.78114 0.84927 1.19581 1.20918 1.20913 1.20201 0.96542 0.97638 0.95551 1.20894 0.99397 0.98769 0.92855 1.20985 0.97543 0.99701 0.95834 1.19930 0.95965 0.97077 0.95971 1.20788 1.01778 1.02457 0.92045 1.21004 1.00052 0.99805 0.92923 1.21032 0.96646 0.98003 0.95989 0.89190 0.89704 0.89312 0.76809 0.88456 0.87432 0.76937 0.92624 0.92660 0.95982 0.95963 0.92886 0.86282 0.86228 0.91188 0.91667 0.91621 0.86076 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.32 36.01 0.37 -1.17 16 2 C 0.52 6.87 7.90 -10.98 -0.09 6.78 16 3 O -0.54 -9.66 16.70 5.56 0.09 -9.57 16 4 N -0.71 -8.06 3.47 -54.93 -0.19 -8.25 16 5 C 0.20 2.40 1.78 -69.08 -0.12 2.28 16 6 H 0.11 1.59 7.15 -51.93 -0.37 1.22 16 7 C -0.15 -1.57 5.22 -27.89 -0.15 -1.71 16 8 C 0.50 7.68 7.69 -10.99 -0.08 7.59 16 9 O -0.54 -10.44 15.35 5.55 0.09 -10.36 16 10 N -0.72 -11.72 5.56 -60.29 -0.33 -12.06 16 11 C 0.12 2.53 5.61 -4.04 -0.02 2.50 16 12 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 13 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 17 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.10 -1.05 4.92 -104.62 -0.51 -1.56 16 22 C -0.10 -0.94 9.32 -39.58 -0.37 -1.31 16 23 C -0.12 -1.07 9.70 -39.58 -0.38 -1.46 16 24 C -0.09 -0.79 5.88 -104.62 -0.62 -1.40 16 25 C -0.11 -0.71 10.01 36.01 0.36 -0.35 16 26 C -0.12 -1.13 9.70 -39.59 -0.38 -1.51 16 27 C -0.10 -1.04 9.67 -39.59 -0.38 -1.43 16 28 H 0.09 0.81 8.12 -51.93 -0.42 0.39 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.40 3.51 8.62 -40.82 -0.35 3.16 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.40 5.49 8.47 -40.82 -0.35 5.15 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.12 0.90 7.74 -52.49 -0.41 0.50 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 44 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 45 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 46 H 0.12 1.24 8.03 -52.49 -0.42 0.82 16 LS Contribution 392.37 15.07 5.91 5.91 Total: -1.00 -35.20 392.37 -9.00 -44.20 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -7.35 Total: 4.71 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -2.93 Total: -5.68 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.21 Total: -45.43 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: 0.18 Total: -19.93 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.20 -9.00 -44.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342632143.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.227 kcal (2) G-P(sol) polarization free energy of solvation -35.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds