Wall clock time and date at job start Tue Mar 31 2020 12:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21277 * 119.99884 * 2 1 4 4 N 1.34777 * 119.99765 * 179.72497 * 2 1 3 5 5 C 1.46502 * 119.99887 * 174.99182 * 4 2 1 6 6 H 1.08997 * 109.46728 * 34.07130 * 5 4 2 7 7 C 1.52997 * 109.46951 * 154.07410 * 5 4 2 8 8 C 1.50694 * 109.47360 * 294.99775 * 7 5 4 9 9 O 1.21284 * 120.00007 * 0.02562 * 8 7 5 10 10 N 1.34775 * 120.00111 * 180.02562 * 8 7 5 11 11 C 1.46502 * 119.99813 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46680 * 179.97438 * 11 10 8 13 13 C 1.50708 * 109.46882 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00012 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99834 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00093 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00067 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46870 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47364 * 119.99647 * 17 15 13 20 20 H 1.48497 * 109.47109 * 239.99875 * 17 15 13 21 21 C 1.50702 * 109.46791 * 274.07498 * 5 4 2 22 22 C 1.38233 * 119.99703 * 319.23270 * 21 5 4 23 23 C 1.38241 * 119.99537 * 179.77177 * 22 21 5 24 24 C 1.38235 * 119.99903 * 0.49954 * 23 22 21 25 25 C 1.50699 * 119.99856 * 179.73106 * 24 23 22 26 26 C 1.38235 * 119.99836 * 359.75014 * 24 23 22 27 27 C 1.38227 * 120.00426 * 0.02562 * 26 24 23 28 28 H 1.08997 * 109.46617 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47270 * 120.00261 * 1 2 3 30 30 H 1.09002 * 109.46810 * 240.00564 * 1 2 3 31 31 H 0.96996 * 120.00096 * 354.98405 * 4 2 1 32 32 H 1.08995 * 109.47098 * 55.00196 * 7 5 4 33 33 H 1.09000 * 109.47065 * 174.99731 * 7 5 4 34 34 H 0.96998 * 120.00271 * 359.97438 * 10 8 7 35 35 H 1.09000 * 109.47194 * 299.99254 * 11 10 8 36 36 H 1.08998 * 109.47558 * 60.00311 * 11 10 8 37 37 H 1.08994 * 109.47566 * 299.99760 * 12 11 10 38 38 H 1.08998 * 109.47130 * 60.00302 * 12 11 10 39 39 H 0.97002 * 119.99599 * 180.02562 * 16 15 13 40 40 H 1.07999 * 120.00407 * 359.97438 * 22 21 5 41 41 H 1.08000 * 120.00123 * 180.23237 * 23 22 21 42 42 H 1.09005 * 109.46946 * 270.02335 * 25 24 23 43 43 H 1.08999 * 109.47183 * 30.02042 * 25 24 23 44 44 H 1.09001 * 109.47041 * 150.02423 * 25 24 23 45 45 H 1.08005 * 119.99506 * 179.97438 * 26 24 23 46 46 H 1.07999 * 120.00438 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0056 5 6 3.6418 -1.1702 -0.1051 6 1 4.0461 -0.2928 0.3996 7 6 4.2000 -2.4365 0.5473 8 6 3.9125 -2.4083 2.0263 9 8 3.3189 -1.4681 2.5108 10 7 4.3148 -3.4278 2.8106 11 6 4.0347 -3.4005 4.2483 12 6 4.5932 -4.6668 4.9007 13 6 4.3056 -4.6386 6.3798 14 1 3.7778 -3.8010 6.8114 15 6 4.7173 -5.6814 7.1822 16 7 5.3606 -6.7012 6.6567 17 14 4.3603 -5.6468 9.0154 18 1 3.6290 -4.3994 9.3538 19 1 3.5298 -6.8225 9.3804 20 1 5.6388 -5.6905 9.7696 21 6 4.0353 -1.1390 -1.5595 22 6 3.3376 -1.8976 -2.4807 23 6 3.6956 -1.8654 -3.8156 24 6 4.7577 -1.0825 -4.2275 25 6 5.1518 -1.0520 -5.6818 26 6 5.4586 -0.3279 -3.3055 27 6 5.0978 -0.3565 -1.9714 28 1 -0.3632 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 -0.3633 -0.5138 0.8901 31 1 1.6987 -2.0052 0.0831 32 1 3.7287 -3.3126 0.1021 33 1 5.2773 -2.4829 0.3874 34 1 4.7892 -4.1799 2.4231 35 1 4.5055 -2.5241 4.6937 36 1 2.9575 -3.3549 4.4079 37 1 4.1222 -5.5431 4.4554 38 1 5.6705 -4.7129 4.7412 39 1 5.6499 -7.4350 7.2212 40 1 2.5107 -2.5130 -2.1581 41 1 3.1481 -2.4551 -4.5359 42 1 5.8879 -1.8323 -5.8752 43 1 4.2708 -1.2222 -6.3006 44 1 5.5818 -0.0794 -5.9214 45 1 6.2888 0.2835 -3.6274 46 1 5.6456 0.2327 -1.2510 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342632143.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:33 Heat of formation + Delta-G solvation = -97.610787 kcal Electronic energy + Delta-G solvation = -25873.725071 eV Core-core repulsion = 22147.146718 eV Total energy + Delta-G solvation = -3726.578352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.46788 -40.28475 -39.86966 -36.92273 -36.30160 -34.81051 -33.68272 -32.38901 -31.79955 -31.38050 -29.90432 -28.07588 -26.59957 -24.37047 -23.67694 -22.82174 -21.93281 -21.43366 -21.12579 -18.67757 -18.31743 -17.85017 -17.42915 -17.01113 -16.56317 -16.43575 -16.40526 -16.06411 -15.83509 -15.58051 -15.04953 -14.77782 -14.51912 -14.40069 -14.31581 -14.27126 -13.80522 -13.63507 -13.23406 -13.20654 -13.08371 -12.98435 -12.93510 -12.81354 -12.54076 -12.41553 -12.22849 -12.08976 -11.80651 -11.66773 -11.45044 -10.93814 -10.83015 -10.61722 -10.13472 -9.97436 -9.80132 -9.40903 -8.25441 -6.35462 0.37200 0.52199 1.39556 1.41094 1.53710 1.68400 1.73510 2.24726 2.31669 2.44399 2.86226 3.09383 3.63297 3.73922 3.91413 3.96445 4.06920 4.16410 4.17056 4.27324 4.45989 4.49887 4.51071 4.54600 4.61760 4.62480 4.66628 4.80687 4.86106 4.86402 4.88898 4.96966 5.06614 5.20055 5.29600 5.31210 5.45487 5.50609 5.52115 5.58597 5.72258 5.73942 5.78879 6.13017 6.16039 6.59050 6.67578 6.78183 7.32969 7.33824 7.34004 8.86381 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017593 B = 0.002412 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.151044 B =11604.082041 C =12665.933593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.507 3.493 3 O -0.601 6.601 4 N -0.704 5.704 5 C 0.207 3.793 6 H 0.064 0.936 7 C -0.132 4.132 8 C 0.503 3.497 9 O -0.581 6.581 10 N -0.717 5.717 11 C 0.142 3.858 12 C 0.023 3.977 13 C -0.546 4.546 14 H 0.056 0.944 15 C 0.007 3.993 16 N -0.925 5.925 17 Si 0.963 3.037 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.277 1.277 21 C -0.109 4.109 22 C -0.102 4.102 23 C -0.127 4.127 24 C -0.094 4.094 25 C -0.113 4.113 26 C -0.130 4.130 27 C -0.119 4.119 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.412 0.588 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.412 0.588 35 H 0.039 0.961 36 H 0.046 0.954 37 H 0.012 0.988 38 H 0.007 0.993 39 H 0.266 0.734 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.134 0.866 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.769 6.358 -26.199 27.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.296 3.704 3 O -0.483 6.483 4 N -0.355 5.355 5 C 0.101 3.899 6 H 0.082 0.918 7 C -0.172 4.172 8 C 0.290 3.710 9 O -0.461 6.461 10 N -0.369 5.369 11 C 0.018 3.982 12 C -0.014 4.014 13 C -0.585 4.585 14 H 0.074 0.926 15 C -0.191 4.191 16 N -0.565 5.565 17 Si 0.788 3.212 18 H -0.192 1.192 19 H -0.201 1.201 20 H -0.203 1.203 21 C -0.111 4.111 22 C -0.120 4.120 23 C -0.145 4.145 24 C -0.094 4.094 25 C -0.169 4.169 26 C -0.148 4.148 27 C -0.138 4.138 28 H 0.104 0.896 29 H 0.136 0.864 30 H 0.118 0.882 31 H 0.249 0.751 32 H 0.152 0.848 33 H 0.146 0.854 34 H 0.248 0.752 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.030 0.970 38 H 0.026 0.974 39 H 0.075 0.925 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.152 0.848 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.696 7.587 -25.804 27.303 hybrid contribution 0.209 -0.658 1.367 1.531 sum -4.487 6.929 -24.437 25.794 Atomic orbital electron populations 1.21913 0.88598 1.05815 1.06149 1.21480 0.92158 0.82985 0.73729 1.90668 1.72221 1.33368 1.52003 1.45791 1.06536 1.09227 1.73964 1.19265 0.81295 0.97927 0.91424 0.91765 1.22007 1.05799 0.99972 0.89437 1.21193 0.78214 0.81508 0.90051 1.90726 1.42965 1.35499 1.76893 1.46147 1.58733 1.23394 1.08579 1.21156 0.98952 0.98686 0.79371 1.19131 0.95576 0.92032 0.94702 1.21497 1.37300 1.05541 0.94119 0.92576 1.25848 0.94653 0.94961 1.03687 1.70056 1.39512 1.09469 1.37443 0.85426 0.78123 0.78344 0.79335 1.19160 1.20065 1.20299 1.20070 0.97263 0.98879 0.94852 1.21113 0.99503 0.98505 0.92905 1.21318 0.97488 0.99604 0.96047 1.20302 0.95639 0.96317 0.97163 1.20835 1.02562 1.03136 0.90405 1.21218 1.00715 1.00297 0.92559 1.21153 0.97283 0.98600 0.96720 0.89586 0.86420 0.88169 0.75140 0.84754 0.85423 0.75249 0.94277 0.93551 0.97002 0.97434 0.92527 0.84336 0.83892 0.90219 0.90542 0.91146 0.84847 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 10.32 71.24 0.74 -1.97 16 2 C 0.51 13.44 7.90 87.66 0.69 14.14 16 3 O -0.60 -22.37 16.70 -3.02 -0.05 -22.42 16 4 N -0.70 -15.38 3.47 -446.09 -1.55 -16.93 16 5 C 0.21 4.86 1.78 44.24 0.08 4.94 16 6 H 0.06 2.07 7.15 -2.39 -0.02 2.05 16 7 C -0.13 -2.59 5.22 29.85 0.16 -2.43 16 8 C 0.50 15.15 7.69 87.66 0.67 15.82 16 9 O -0.58 -22.88 15.35 -3.04 -0.05 -22.92 16 10 N -0.72 -22.84 5.56 -463.05 -2.57 -25.41 16 11 C 0.14 5.95 5.61 86.38 0.48 6.44 16 12 C 0.02 1.14 5.09 29.85 0.15 1.29 16 13 C -0.55 -30.28 9.11 25.60 0.23 -30.05 16 14 H 0.06 3.08 7.74 -2.91 -0.02 3.05 16 15 C 0.01 0.41 5.46 84.65 0.46 0.87 16 16 N -0.93 -53.59 13.29 21.45 0.28 -53.30 16 17 Si 0.96 43.42 29.54 68.60 2.03 45.44 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 C -0.11 -2.26 4.92 -19.87 -0.10 -2.36 16 22 C -0.10 -1.67 9.32 22.27 0.21 -1.46 16 23 C -0.13 -1.88 9.70 22.27 0.22 -1.66 16 24 C -0.09 -1.47 5.88 -19.87 -0.12 -1.59 16 25 C -0.11 -1.13 10.01 71.24 0.71 -0.41 16 26 C -0.13 -2.35 9.70 22.27 0.22 -2.14 16 27 C -0.12 -2.56 9.67 22.27 0.22 -2.34 16 28 H 0.09 1.49 8.12 -2.39 -0.02 1.47 16 29 H 0.12 1.13 8.14 -2.39 -0.02 1.12 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.41 6.44 8.62 -92.71 -0.80 5.64 16 32 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.13 2.07 8.14 -2.39 -0.02 2.06 16 34 H 0.41 10.84 8.47 -92.71 -0.79 10.06 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.01 0.59 8.14 -2.39 -0.02 0.58 16 38 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 40 H 0.14 1.63 7.74 -2.91 -0.02 1.60 16 41 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 42 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.08 0.60 8.09 -2.39 -0.02 0.58 16 44 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 45 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 46 H 0.12 2.53 8.03 -2.91 -0.02 2.51 16 Total: -1.00 -78.68 392.37 2.51 -76.16 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -0.60 Total: 22.29 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 5.02 Total: -2.91 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -3.84 Total: -95.64 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -0.10 Total: -45.34 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -78.68 2.51 -76.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342632143.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.449 kcal (2) G-P(sol) polarization free energy of solvation -78.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds