Wall clock time and date at job start Tue Mar 31 2020 12:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21280 * 120.00569 * 2 1 4 4 N 1.34775 * 119.99935 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00197 * 184.99738 * 4 2 1 6 6 H 1.08998 * 109.47022 * 323.94136 * 5 4 2 7 7 C 1.53004 * 109.47127 * 203.94297 * 5 4 2 8 8 C 1.50695 * 109.46861 * 65.00093 * 7 5 4 9 9 O 1.21281 * 120.00205 * 359.97438 * 8 7 5 10 10 N 1.34782 * 120.00079 * 179.97438 * 8 7 5 11 11 C 1.46493 * 120.00416 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.02562 * 11 10 8 13 13 C 1.50705 * 109.46827 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00448 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99670 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99848 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99814 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47388 * 59.99961 * 17 15 13 19 19 H 1.48501 * 109.46987 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47132 * 300.00000 * 17 15 13 21 21 C 1.50704 * 109.47357 * 83.94498 * 5 4 2 22 22 C 1.38235 * 119.99769 * 222.24385 * 21 5 4 23 23 C 1.38229 * 119.99922 * 179.97438 * 22 21 5 24 24 C 1.38239 * 120.00249 * 359.97438 * 23 22 21 25 25 C 1.50699 * 120.00550 * 179.97438 * 24 23 22 26 26 C 1.38233 * 119.99546 * 359.97438 * 24 23 22 27 27 C 1.38232 * 120.00335 * 359.97438 * 26 24 23 28 28 H 1.09001 * 109.47052 * 240.00217 * 1 2 3 29 29 H 1.09007 * 109.46996 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47596 * 119.99723 * 1 2 3 31 31 H 0.97001 * 119.99980 * 4.99009 * 4 2 1 32 32 H 1.09003 * 109.46699 * 184.99566 * 7 5 4 33 33 H 1.09001 * 109.47140 * 304.99796 * 7 5 4 34 34 H 0.97000 * 119.99666 * 0.02562 * 10 8 7 35 35 H 1.09002 * 109.47157 * 300.00417 * 11 10 8 36 36 H 1.09001 * 109.47021 * 60.00074 * 11 10 8 37 37 H 1.09003 * 109.46699 * 299.99835 * 12 11 10 38 38 H 1.09001 * 109.47140 * 60.00066 * 12 11 10 39 39 H 0.97007 * 120.00081 * 179.97438 * 16 15 13 40 40 H 1.08004 * 120.00108 * 0.24594 * 22 21 5 41 41 H 1.08000 * 120.00464 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.46667 * 89.99590 * 25 24 23 43 43 H 1.08993 * 109.47047 * 210.00338 * 25 24 23 44 44 H 1.09006 * 109.46424 * 330.00370 * 25 24 23 45 45 H 1.08002 * 119.99814 * 179.97438 * 26 24 23 46 46 H 1.07998 * 120.00178 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6416 -1.1697 0.1100 6 1 4.0482 -0.3138 -0.4286 7 6 4.1965 -2.4620 -0.4927 8 6 3.9085 -2.4905 -1.9716 9 8 3.3173 -1.5684 -2.4922 10 7 4.3079 -3.5408 -2.7159 11 6 4.0275 -3.5689 -4.1534 12 6 4.5825 -4.8611 -4.7562 13 6 4.2945 -4.8896 -6.2352 14 1 3.7680 -4.0685 -6.6988 15 6 4.7033 -5.9640 -6.9965 16 7 5.3449 -6.9637 -6.4320 17 14 4.3458 -5.9997 -8.8296 18 1 4.9898 -4.8318 -9.4824 19 1 4.8845 -7.2538 -9.4146 20 1 2.8781 -5.9423 -9.0489 21 6 4.0358 -1.0830 1.5620 22 6 5.0770 -0.2596 1.9475 23 6 5.4382 -0.1797 3.2794 24 6 4.7579 -0.9227 4.2259 25 6 5.1520 -0.8360 5.6779 26 6 3.7159 -1.7453 3.8405 27 6 3.3540 -1.8245 2.5087 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 1.6985 -2.0056 -0.0740 32 1 5.2736 -2.5048 -0.3314 33 1 3.7229 -3.3189 -0.0137 34 1 4.7805 -4.2785 -2.2994 35 1 2.9503 -3.5266 -4.3144 36 1 4.5004 -2.7116 -4.6326 37 1 5.6597 -4.9037 -4.5952 38 1 4.1092 -5.7181 -4.2769 39 1 5.6322 -7.7198 -6.9675 40 1 5.6055 0.3246 1.2087 41 1 6.2520 0.4633 3.5806 42 1 4.5857 -0.0399 6.1611 43 1 4.9375 -1.7847 6.1698 44 1 6.2179 -0.6207 5.7527 45 1 3.1846 -2.3262 4.5799 46 1 2.5402 -2.4675 2.2076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342632144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:37 Heat of formation + Delta-G solvation = -74.458540 kcal Electronic energy + Delta-G solvation = -25872.660800 eV Core-core repulsion = 22147.086404 eV Total energy + Delta-G solvation = -3725.574396 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.48651 -39.14690 -38.90351 -35.78653 -34.78731 -32.92032 -32.82758 -31.33145 -31.10015 -29.91438 -28.88409 -27.25450 -24.86471 -23.34912 -22.92266 -21.19426 -20.93262 -20.34660 -20.01635 -17.41376 -16.88730 -16.58539 -16.26804 -16.02024 -15.37175 -15.20981 -15.14212 -14.92490 -14.62218 -14.47902 -14.03496 -13.65976 -13.60668 -13.45607 -13.29057 -12.93192 -12.73878 -12.52872 -12.33708 -12.32134 -12.20705 -11.99016 -11.59532 -11.36532 -11.24511 -11.11193 -11.03917 -10.68537 -10.35649 -9.88295 -9.83073 -9.52438 -9.29457 -9.12446 -9.06070 -8.68030 -8.57378 -8.38731 -6.12332 -4.15366 1.09771 1.23500 2.71798 2.93793 3.18276 3.29116 3.33029 3.35673 3.48680 3.69534 4.38727 4.54519 4.59311 4.67276 4.72562 4.82288 4.84165 4.98606 5.11076 5.14811 5.22451 5.24676 5.28077 5.29493 5.35229 5.44655 5.49455 5.52655 5.68468 5.75907 5.87101 5.93158 6.22265 6.29835 6.30838 6.32176 6.39016 6.54552 6.69790 6.81547 6.87459 7.47355 7.49769 7.57578 7.85495 7.96340 8.24311 8.27610 8.60572 8.90406 9.49625 10.99143 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.002408 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.624362 B =11626.221241 C =12678.825741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.519 3.481 3 O -0.545 6.545 4 N -0.713 5.713 5 C 0.204 3.796 6 H 0.104 0.896 7 C -0.148 4.148 8 C 0.501 3.499 9 O -0.539 6.539 10 N -0.723 5.723 11 C 0.122 3.878 12 C 0.013 3.987 13 C -0.523 4.523 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.098 4.098 22 C -0.097 4.097 23 C -0.120 4.120 24 C -0.089 4.089 25 C -0.114 4.114 26 C -0.123 4.123 27 C -0.101 4.101 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.398 0.602 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.397 0.603 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.263 0.737 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.120 0.880 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.893 8.547 24.167 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.306 3.694 3 O -0.422 6.422 4 N -0.364 5.364 5 C 0.098 3.902 6 H 0.122 0.878 7 C -0.189 4.189 8 C 0.286 3.714 9 O -0.417 6.417 10 N -0.373 5.373 11 C 0.000 4.000 12 C -0.024 4.024 13 C -0.562 4.562 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.099 4.099 22 C -0.116 4.116 23 C -0.138 4.138 24 C -0.089 4.089 25 C -0.171 4.171 26 C -0.141 4.141 27 C -0.119 4.119 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.232 0.768 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.231 0.769 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.138 0.862 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.812 9.799 23.722 25.947 hybrid contribution -0.112 -1.052 -0.906 1.393 sum -3.924 8.746 22.815 24.747 Atomic orbital electron populations 1.21906 0.92039 1.05307 1.04101 1.20638 0.90370 0.83454 0.74909 1.90696 1.70800 1.31428 1.49288 1.45819 1.06599 1.08906 1.75094 1.19438 0.81042 0.98774 0.90926 0.87783 1.22025 1.04231 0.98834 0.93781 1.20436 0.79699 0.82789 0.88524 1.90730 1.41226 1.36006 1.73711 1.46353 1.58437 1.21576 1.10937 1.21707 1.00097 1.01248 0.76946 1.19315 0.96627 0.90537 0.95944 1.21012 1.37453 1.04945 0.92742 0.92332 1.24997 0.94918 0.95456 0.98912 1.69942 1.38699 1.08482 1.36174 0.86568 0.78745 0.77361 0.84839 1.20088 1.21225 1.20111 1.20191 0.96672 0.97605 0.95463 1.21034 0.96718 0.97671 0.96145 1.21005 1.00299 0.99753 0.92759 1.19930 0.96148 0.96945 0.95899 1.20788 1.01716 1.02382 0.92184 1.20981 0.97550 0.99622 0.95940 1.20892 0.99345 0.98949 0.92709 0.89703 0.89194 0.89303 0.76789 0.87401 0.88433 0.76928 0.92660 0.92625 0.95971 0.95996 0.92768 0.85818 0.86084 0.91290 0.91611 0.91577 0.86232 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.32 36.00 0.37 -1.17 16 2 C 0.52 6.84 7.88 -10.99 -0.09 6.75 16 3 O -0.55 -9.61 16.74 5.56 0.09 -9.52 16 4 N -0.71 -8.07 3.55 -54.93 -0.19 -8.26 16 5 C 0.20 2.41 1.76 -69.08 -0.12 2.29 16 6 H 0.10 1.56 7.19 -51.93 -0.37 1.19 16 7 C -0.15 -1.56 5.20 -27.88 -0.14 -1.71 16 8 C 0.50 7.65 7.69 -10.99 -0.08 7.57 16 9 O -0.54 -10.41 15.35 5.56 0.09 -10.32 16 10 N -0.72 -11.69 5.56 -60.30 -0.33 -12.03 16 11 C 0.12 2.52 5.61 -4.04 -0.02 2.50 16 12 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 13 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 17 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C -0.10 -1.05 4.89 -104.62 -0.51 -1.57 16 22 C -0.10 -1.04 9.67 -39.59 -0.38 -1.42 16 23 C -0.12 -1.14 9.70 -39.58 -0.38 -1.53 16 24 C -0.09 -0.79 5.88 -104.62 -0.62 -1.41 16 25 C -0.11 -0.72 10.01 36.01 0.36 -0.36 16 26 C -0.12 -1.08 9.70 -39.59 -0.38 -1.47 16 27 C -0.10 -0.94 9.31 -39.59 -0.37 -1.31 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.81 8.12 -51.92 -0.42 0.38 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.40 3.55 8.60 -40.82 -0.35 3.19 16 32 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.40 5.48 8.47 -40.82 -0.35 5.13 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 40 H 0.12 1.26 8.02 -52.48 -0.42 0.84 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 44 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 45 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 46 H 0.12 0.91 7.79 -52.49 -0.41 0.50 16 LS Contribution 392.43 15.07 5.91 5.91 Total: -1.00 -35.06 392.43 -9.00 -44.06 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.35 Total: 4.81 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -2.93 Total: -5.76 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.21 Total: -45.40 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.18 Total: -19.84 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.06 -9.00 -44.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342632144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.396 kcal (2) G-P(sol) polarization free energy of solvation -35.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds