Wall clock time and date at job start Tue Mar 31 2020 12:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21280 * 120.00569 * 2 1 4 4 N 1.34775 * 119.99935 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00197 * 184.99738 * 4 2 1 6 6 H 1.08998 * 109.47022 * 323.94136 * 5 4 2 7 7 C 1.53004 * 109.47127 * 203.94297 * 5 4 2 8 8 C 1.50695 * 109.46861 * 65.00093 * 7 5 4 9 9 O 1.21281 * 120.00205 * 359.97438 * 8 7 5 10 10 N 1.34782 * 120.00079 * 179.97438 * 8 7 5 11 11 C 1.46493 * 120.00416 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.02562 * 11 10 8 13 13 C 1.50705 * 109.46827 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00448 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99670 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99848 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99814 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47388 * 59.99961 * 17 15 13 19 19 H 1.48501 * 109.46987 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47132 * 300.00000 * 17 15 13 21 21 C 1.50704 * 109.47357 * 83.94498 * 5 4 2 22 22 C 1.38235 * 119.99769 * 222.24385 * 21 5 4 23 23 C 1.38229 * 119.99922 * 179.97438 * 22 21 5 24 24 C 1.38239 * 120.00249 * 359.97438 * 23 22 21 25 25 C 1.50699 * 120.00550 * 179.97438 * 24 23 22 26 26 C 1.38233 * 119.99546 * 359.97438 * 24 23 22 27 27 C 1.38232 * 120.00335 * 359.97438 * 26 24 23 28 28 H 1.09001 * 109.47052 * 240.00217 * 1 2 3 29 29 H 1.09007 * 109.46996 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47596 * 119.99723 * 1 2 3 31 31 H 0.97001 * 119.99980 * 4.99009 * 4 2 1 32 32 H 1.09003 * 109.46699 * 184.99566 * 7 5 4 33 33 H 1.09001 * 109.47140 * 304.99796 * 7 5 4 34 34 H 0.97000 * 119.99666 * 0.02562 * 10 8 7 35 35 H 1.09002 * 109.47157 * 300.00417 * 11 10 8 36 36 H 1.09001 * 109.47021 * 60.00074 * 11 10 8 37 37 H 1.09003 * 109.46699 * 299.99835 * 12 11 10 38 38 H 1.09001 * 109.47140 * 60.00066 * 12 11 10 39 39 H 0.97007 * 120.00081 * 179.97438 * 16 15 13 40 40 H 1.08004 * 120.00108 * 0.24594 * 22 21 5 41 41 H 1.08000 * 120.00464 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.46667 * 89.99590 * 25 24 23 43 43 H 1.08993 * 109.47047 * 210.00338 * 25 24 23 44 44 H 1.09006 * 109.46424 * 330.00370 * 25 24 23 45 45 H 1.08002 * 119.99814 * 179.97438 * 26 24 23 46 46 H 1.07998 * 120.00178 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6416 -1.1697 0.1100 6 1 4.0482 -0.3138 -0.4286 7 6 4.1965 -2.4620 -0.4927 8 6 3.9085 -2.4905 -1.9716 9 8 3.3173 -1.5684 -2.4922 10 7 4.3079 -3.5408 -2.7159 11 6 4.0275 -3.5689 -4.1534 12 6 4.5825 -4.8611 -4.7562 13 6 4.2945 -4.8896 -6.2352 14 1 3.7680 -4.0685 -6.6988 15 6 4.7033 -5.9640 -6.9965 16 7 5.3449 -6.9637 -6.4320 17 14 4.3458 -5.9997 -8.8296 18 1 4.9898 -4.8318 -9.4824 19 1 4.8845 -7.2538 -9.4146 20 1 2.8781 -5.9423 -9.0489 21 6 4.0358 -1.0830 1.5620 22 6 5.0770 -0.2596 1.9475 23 6 5.4382 -0.1797 3.2794 24 6 4.7579 -0.9227 4.2259 25 6 5.1520 -0.8360 5.6779 26 6 3.7159 -1.7453 3.8405 27 6 3.3540 -1.8245 2.5087 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 1.6985 -2.0056 -0.0740 32 1 5.2736 -2.5048 -0.3314 33 1 3.7229 -3.3189 -0.0137 34 1 4.7805 -4.2785 -2.2994 35 1 2.9503 -3.5266 -4.3144 36 1 4.5004 -2.7116 -4.6326 37 1 5.6597 -4.9037 -4.5952 38 1 4.1092 -5.7181 -4.2769 39 1 5.6322 -7.7198 -6.9675 40 1 5.6055 0.3246 1.2087 41 1 6.2520 0.4633 3.5806 42 1 4.5857 -0.0399 6.1611 43 1 4.9375 -1.7847 6.1698 44 1 6.2179 -0.6207 5.7527 45 1 3.1846 -2.3262 4.5799 46 1 2.5402 -2.4675 2.2076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342632144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:36 Heat of formation + Delta-G solvation = -97.528418 kcal Electronic energy + Delta-G solvation = -25873.661185 eV Core-core repulsion = 22147.086404 eV Total energy + Delta-G solvation = -3726.574781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.46945 -40.28778 -39.86577 -36.92222 -36.29883 -34.80800 -33.68338 -32.38762 -31.80120 -31.37865 -29.90517 -28.07564 -26.59567 -24.37034 -23.67476 -22.81749 -21.94075 -21.43218 -21.11892 -18.67044 -18.30589 -17.85242 -17.43239 -17.01156 -16.56552 -16.43740 -16.41141 -16.06483 -15.83792 -15.58025 -15.04674 -14.75680 -14.55615 -14.39457 -14.30360 -14.27261 -13.77864 -13.63831 -13.23734 -13.21551 -13.07826 -12.98290 -12.91548 -12.80469 -12.55649 -12.41851 -12.21104 -12.09650 -11.80638 -11.66381 -11.48020 -10.93950 -10.83204 -10.60512 -10.13447 -9.97314 -9.80159 -9.41073 -8.24794 -6.35027 0.37054 0.52207 1.41194 1.42968 1.51045 1.68302 1.73328 2.24777 2.31674 2.44664 2.86410 3.09893 3.63015 3.73803 3.91194 3.96438 4.06878 4.16226 4.17016 4.27056 4.46155 4.49964 4.51259 4.54629 4.61712 4.62595 4.66503 4.80772 4.85535 4.86343 4.89056 4.96932 5.06469 5.20009 5.29549 5.31224 5.45503 5.50519 5.52012 5.58856 5.72204 5.73778 5.78957 6.13005 6.16288 6.58906 6.67561 6.78167 7.32727 7.33641 7.34224 8.86585 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.002408 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.624362 B =11626.221241 C =12678.825741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.507 3.493 3 O -0.601 6.601 4 N -0.704 5.704 5 C 0.207 3.793 6 H 0.063 0.937 7 C -0.132 4.132 8 C 0.503 3.497 9 O -0.581 6.581 10 N -0.717 5.717 11 C 0.142 3.858 12 C 0.024 3.976 13 C -0.548 4.548 14 H 0.056 0.944 15 C 0.008 3.992 16 N -0.925 5.925 17 Si 0.963 3.037 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.268 1.268 21 C -0.109 4.109 22 C -0.118 4.118 23 C -0.130 4.130 24 C -0.094 4.094 25 C -0.113 4.113 26 C -0.127 4.127 27 C -0.102 4.102 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.412 0.588 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.412 0.588 35 H 0.046 0.954 36 H 0.039 0.961 37 H 0.007 0.993 38 H 0.011 0.989 39 H 0.266 0.734 40 H 0.115 0.885 41 H 0.133 0.867 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.143 0.857 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 7.386 25.782 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.296 3.704 3 O -0.482 6.482 4 N -0.355 5.355 5 C 0.101 3.899 6 H 0.081 0.919 7 C -0.172 4.172 8 C 0.290 3.710 9 O -0.461 6.461 10 N -0.368 5.368 11 C 0.018 3.982 12 C -0.014 4.014 13 C -0.587 4.587 14 H 0.075 0.925 15 C -0.191 4.191 16 N -0.564 5.564 17 Si 0.787 3.213 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.193 1.193 21 C -0.110 4.110 22 C -0.137 4.137 23 C -0.148 4.148 24 C -0.094 4.094 25 C -0.169 4.169 26 C -0.145 4.145 27 C -0.120 4.120 28 H 0.135 0.865 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.248 0.752 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.248 0.752 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.025 0.975 38 H 0.030 0.970 39 H 0.075 0.925 40 H 0.133 0.867 41 H 0.151 0.849 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.161 0.839 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.685 8.591 25.367 27.189 hybrid contribution 0.186 -0.674 -1.351 1.521 sum -4.499 7.916 24.016 25.684 Atomic orbital electron populations 1.21913 0.88614 1.05820 1.06141 1.21475 0.92155 0.82983 0.73770 1.90669 1.72205 1.33347 1.51997 1.45806 1.06532 1.09206 1.73965 1.19264 0.81292 0.97692 0.91603 0.91865 1.22007 1.05837 0.99610 0.89757 1.21189 0.78200 0.81352 0.90215 1.90723 1.43036 1.37385 1.74938 1.46148 1.58852 1.22675 1.09172 1.21156 0.98962 0.98582 0.79468 1.19122 0.95567 0.91793 0.94905 1.21445 1.37589 1.05084 0.94557 0.92537 1.25847 0.94632 0.95063 1.03567 1.70040 1.39466 1.09041 1.37895 0.85536 0.78890 0.77590 0.79267 1.19567 1.20530 1.19294 1.20065 0.97387 0.98776 0.94813 1.21151 0.97409 0.98290 0.96848 1.21219 1.00940 1.00258 0.92409 1.20302 0.95804 0.96225 0.97078 1.20834 1.02254 1.03333 0.90511 1.21316 0.97442 0.99514 0.96197 1.21112 0.99434 0.98749 0.92719 0.86455 0.89557 0.88172 0.75165 0.85406 0.84730 0.75248 0.93528 0.94264 0.97463 0.97029 0.92519 0.86690 0.84865 0.90671 0.90318 0.90916 0.83880 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 10.32 71.23 0.74 -1.96 16 2 C 0.51 13.38 7.88 87.66 0.69 14.07 16 3 O -0.60 -22.19 16.74 -3.03 -0.05 -22.24 16 4 N -0.70 -15.39 3.55 -446.10 -1.58 -16.97 16 5 C 0.21 4.88 1.76 44.25 0.08 4.96 16 6 H 0.06 2.03 7.19 -2.39 -0.02 2.01 16 7 C -0.13 -2.58 5.20 29.85 0.16 -2.42 16 8 C 0.50 15.08 7.69 87.65 0.67 15.75 16 9 O -0.58 -22.75 15.35 -3.03 -0.05 -22.79 16 10 N -0.72 -22.76 5.56 -463.06 -2.57 -25.33 16 11 C 0.14 5.94 5.61 86.38 0.48 6.42 16 12 C 0.02 1.16 5.09 29.85 0.15 1.31 16 13 C -0.55 -30.36 9.11 25.60 0.23 -30.12 16 14 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 15 C 0.01 0.44 5.46 84.66 0.46 0.90 16 16 N -0.92 -53.58 13.29 21.45 0.28 -53.30 16 17 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 C -0.11 -2.27 4.89 -19.87 -0.10 -2.37 16 22 C -0.12 -2.58 9.67 22.27 0.22 -2.36 16 23 C -0.13 -2.39 9.70 22.27 0.22 -2.17 16 24 C -0.09 -1.48 5.88 -19.87 -0.12 -1.60 16 25 C -0.11 -1.14 10.01 71.24 0.71 -0.43 16 26 C -0.13 -1.89 9.70 22.27 0.22 -1.68 16 27 C -0.10 -1.68 9.31 22.27 0.21 -1.47 16 28 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.48 8.12 -2.38 -0.02 1.46 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.41 6.51 8.60 -92.71 -0.80 5.71 16 32 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.41 10.81 8.47 -92.71 -0.79 10.02 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 38 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.27 14.52 8.31 -92.70 -0.77 13.75 16 40 H 0.12 2.55 8.02 -2.91 -0.02 2.53 16 41 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16 42 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.08 0.60 8.08 -2.39 -0.02 0.58 16 44 H 0.07 0.64 8.09 -2.38 -0.02 0.62 16 45 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 46 H 0.14 1.64 7.79 -2.91 -0.02 1.62 16 Total: -1.00 -78.33 392.43 2.48 -75.85 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -0.60 Total: 22.62 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 5.02 Total: -3.18 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -3.87 Total: -95.60 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -0.10 Total: -45.04 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -78.33 2.48 -75.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342632144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.682 kcal (2) G-P(sol) polarization free energy of solvation -78.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds