Wall clock time and date at job start Tue Mar 31 2020 12:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 112.85063 * 2 1 4 4 C 1.53777 * 113.61560 * 131.20279 * 2 1 3 5 5 C 1.53771 * 87.08572 * 89.11060 * 4 2 1 6 6 C 1.50702 * 113.61527 * 139.98176 * 5 4 2 7 7 O 1.21283 * 120.00006 * 1.53203 * 6 5 4 8 8 N 1.34783 * 120.00113 * 181.53241 * 6 5 4 9 9 C 1.39573 * 120.00065 * 179.97438 * 8 6 5 10 10 N 1.32272 * 119.72873 * 359.97438 * 9 8 6 11 11 C 1.31960 * 121.69603 * 180.02562 * 10 9 8 12 12 C 1.38081 * 120.94943 * 0.02562 * 11 10 9 13 13 C 1.38775 * 119.35675 * 359.97438 * 12 11 10 14 14 C 1.38793 * 118.44899 * 359.97438 * 13 12 11 15 15 O 1.35985 * 120.49800 * 179.97438 * 14 13 12 16 16 C 1.42894 * 117.00127 * 0.02562 * 15 14 13 17 17 C 1.52993 * 109.47184 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.47175 * 179.97438 * 17 16 15 19 19 H 1.07995 * 119.99637 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99874 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00566 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99943 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46658 * 90.00092 * 22 20 18 24 24 H 1.48496 * 109.47417 * 210.00375 * 22 20 18 25 25 H 1.48500 * 109.47126 * 330.00681 * 22 20 18 26 26 C 1.53785 * 87.17190 * 25.39298 * 5 4 2 27 27 H 1.09005 * 109.47208 * 288.80313 * 1 2 3 28 28 H 1.09004 * 109.47179 * 48.79645 * 1 2 3 29 29 H 1.09000 * 109.47352 * 168.80152 * 1 2 3 30 30 H 1.09009 * 109.47075 * 191.19612 * 3 2 1 31 31 H 1.08996 * 109.47541 * 311.20036 * 3 2 1 32 32 H 1.09002 * 109.47057 * 71.20392 * 3 2 1 33 33 H 1.09010 * 113.61446 * 334.56130 * 4 2 1 34 34 H 1.09001 * 113.61486 * 203.66611 * 4 2 1 35 35 H 1.09000 * 113.62009 * 270.80171 * 5 4 2 36 36 H 0.97005 * 119.99606 * 0.02562 * 8 6 5 37 37 H 1.07996 * 119.52049 * 180.02562 * 11 10 9 38 38 H 1.08001 * 120.32567 * 179.97438 * 12 11 10 39 39 H 1.08002 * 120.77763 * 179.73382 * 13 12 11 40 40 H 1.09004 * 109.46973 * 300.00245 * 16 15 14 41 41 H 1.09001 * 109.46823 * 59.99905 * 16 15 14 42 42 H 1.09004 * 109.47159 * 299.99878 * 17 16 15 43 43 H 1.09001 * 109.47525 * 60.00082 * 17 16 15 44 44 H 0.96995 * 120.00545 * 179.97438 * 21 20 18 45 45 H 1.09000 * 113.61465 * 89.15731 * 26 5 4 46 46 H 1.09006 * 113.61267 * 220.06033 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9281 1.0601 5 6 2.0928 -2.0426 0.0019 6 6 3.3077 -2.9343 0.0027 7 8 4.1938 -2.7512 0.8104 8 7 3.4096 -3.9352 -0.8942 9 6 4.5351 -4.7607 -0.8938 10 7 5.4987 -4.5556 -0.0112 11 6 6.5794 -5.3119 0.0236 12 6 6.7463 -6.3536 -0.8673 13 6 5.7608 -6.6059 -1.8113 14 6 4.6344 -5.7951 -1.8241 15 8 3.6434 -6.0048 -2.7313 16 6 3.8231 -7.0840 -3.6505 17 6 2.6153 -7.1633 -4.5863 18 6 2.8051 -8.3011 -5.5561 19 1 3.6976 -8.9073 -5.5093 20 6 1.8387 -8.5688 -6.5023 21 7 0.7515 -7.8310 -6.5590 22 14 2.0742 -9.9788 -7.7050 23 1 1.5012 -11.2217 -7.1287 24 1 1.3848 -9.6612 -8.9813 25 1 3.5239 -10.1743 -7.9607 26 6 2.1448 -0.9317 -1.0603 27 1 -0.3634 0.3312 0.9729 28 1 -0.3634 0.6770 -0.7732 29 1 -0.3634 -1.0081 -0.1996 30 1 3.1943 1.3532 -0.1996 31 1 1.6415 2.0076 -0.7732 32 1 1.9601 1.8733 0.9729 33 1 1.4945 -1.1069 1.9156 34 1 3.1590 -0.6487 1.3495 35 1 1.1573 -2.6019 0.0033 36 1 2.7011 -4.0813 -1.5404 37 1 7.3444 -5.1133 0.7596 38 1 7.6351 -6.9660 -0.8301 39 1 5.8696 -7.4119 -2.5219 40 1 4.7262 -6.9152 -4.2370 41 1 3.9177 -8.0192 -3.0987 42 1 1.7119 -7.3319 -4.0001 43 1 2.5211 -6.2280 -5.1381 44 1 0.0718 -8.0191 -7.2249 45 1 3.1575 -0.6533 -1.3518 46 1 1.4922 -1.1134 -1.9144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351820993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:02 Heat of formation + Delta-G solvation = -25.597061 kcal Electronic energy + Delta-G solvation = -26140.702938 eV Core-core repulsion = 22417.247335 eV Total energy + Delta-G solvation = -3723.455603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.05941 -40.19099 -38.33640 -37.64472 -34.75086 -33.48055 -31.74079 -31.20546 -30.46117 -29.04426 -27.66335 -25.93267 -25.46301 -24.89503 -23.13593 -22.51719 -20.94147 -20.00558 -18.48916 -18.27611 -17.50585 -17.23375 -16.17807 -15.94235 -15.77356 -15.39413 -15.00189 -14.70019 -14.57446 -14.48755 -14.25783 -13.93274 -13.61936 -13.20523 -12.97317 -12.91101 -12.79633 -12.41349 -12.07962 -12.02794 -11.92836 -11.79397 -11.34496 -11.08964 -11.01011 -10.99631 -10.68979 -10.67707 -10.53663 -10.31188 -10.06093 -10.05109 -9.77222 -9.41619 -9.20391 -8.96955 -8.53071 -7.64648 -6.18742 -4.23714 1.21848 1.45687 2.73440 2.94860 3.21941 3.28126 3.30337 3.53467 4.01422 4.19489 4.30055 4.33138 4.38632 4.50429 4.62516 4.88299 4.95746 5.01465 5.15228 5.18167 5.20886 5.34519 5.39758 5.40067 5.47307 5.56084 5.61200 5.62558 5.69501 5.79764 5.85933 5.89273 5.89452 5.93464 6.06932 6.14280 6.19252 6.28095 6.38419 6.53851 6.64977 7.31343 7.34357 7.51853 7.63803 7.84971 8.09882 8.13698 8.39564 8.81468 9.41294 10.92671 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011559 B = 0.002995 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.860685 B = 9346.245520 C =11524.727708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 C -0.135 4.135 4 C -0.106 4.106 5 C -0.137 4.137 6 C 0.514 3.486 7 O -0.482 6.482 8 N -0.651 5.651 9 C 0.328 3.672 10 N -0.445 5.445 11 C 0.074 3.926 12 C -0.161 4.161 13 C -0.148 4.148 14 C 0.066 3.934 15 O -0.316 6.316 16 C 0.066 3.934 17 C 0.027 3.973 18 C -0.528 4.528 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.116 4.116 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.424 0.576 37 H 0.156 0.844 38 H 0.134 0.866 39 H 0.145 0.855 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.264 0.736 45 H 0.086 0.914 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.845 12.744 13.069 18.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.090 4.090 3 C -0.192 4.192 4 C -0.143 4.143 5 C -0.158 4.158 6 C 0.300 3.700 7 O -0.352 6.352 8 N -0.299 5.299 9 C 0.095 3.905 10 N -0.160 5.160 11 C -0.082 4.082 12 C -0.182 4.182 13 C -0.175 4.175 14 C 0.015 3.985 15 O -0.228 6.228 16 C -0.008 4.008 17 C -0.010 4.010 18 C -0.567 4.567 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.527 5.527 22 Si 0.726 3.274 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.154 4.154 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.133 0.867 36 H 0.262 0.738 37 H 0.173 0.827 38 H 0.152 0.848 39 H 0.162 0.838 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.074 0.926 45 H 0.104 0.896 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.977 13.749 14.131 20.113 hybrid contribution -0.014 -1.963 -1.794 2.659 sum 3.962 11.786 12.337 17.516 Atomic orbital electron populations 1.21623 0.92909 1.02208 1.01961 1.21814 0.95683 0.94706 0.96792 1.21713 1.00634 0.95156 1.01696 1.22958 1.02402 0.93224 0.95751 1.22772 0.97059 0.95101 1.00876 1.20728 0.88640 0.80230 0.80419 1.90765 1.39872 1.68349 1.36175 1.43568 1.20073 1.30272 1.35953 1.17869 0.89616 0.90331 0.92659 1.67627 1.00776 1.27413 1.20159 1.22409 0.94808 0.92316 0.98698 1.21882 0.99984 0.99711 0.96646 1.21607 0.93622 1.00970 1.01303 1.19614 0.90775 0.95699 0.92438 1.86100 1.40497 1.53196 1.43033 1.23390 1.02620 0.85642 0.89132 1.19123 0.91134 0.98194 0.92573 1.20946 1.05307 1.14726 1.15676 0.92352 1.24975 0.94991 0.96648 0.97459 1.69957 1.08549 1.38943 1.35214 0.86489 0.78399 0.82136 0.80386 1.20456 1.21000 1.19748 1.23080 1.02017 0.94005 0.96291 0.92272 0.92223 0.92169 0.92431 0.92559 0.92480 0.90984 0.88615 0.86687 0.73841 0.82674 0.84825 0.83773 0.92970 0.92968 0.95365 0.95345 0.92635 0.89557 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 9.07 37.16 0.34 -0.60 16 2 C -0.09 -0.75 1.39 -153.61 -0.21 -0.96 16 3 C -0.13 -1.04 9.20 37.16 0.34 -0.70 16 4 C -0.11 -1.03 6.55 -25.93 -0.17 -1.20 16 5 C -0.14 -1.43 3.79 -90.96 -0.34 -1.78 16 6 C 0.51 7.41 7.32 -10.98 -0.08 7.33 16 7 O -0.48 -8.51 14.16 5.55 0.08 -8.43 16 8 N -0.65 -9.70 5.39 -11.29 -0.06 -9.76 16 9 C 0.33 5.54 7.45 -154.44 -1.15 4.39 16 10 N -0.44 -7.57 7.88 -12.23 -0.10 -7.67 16 11 C 0.07 1.03 11.17 -17.55 -0.20 0.83 16 12 C -0.16 -2.04 10.10 -39.44 -0.40 -2.44 16 13 C -0.15 -2.19 9.14 -39.18 -0.36 -2.55 16 14 C 0.07 1.12 6.72 -38.92 -0.26 0.86 16 15 O -0.32 -5.85 9.39 -19.69 -0.18 -6.03 16 16 C 0.07 1.31 4.70 37.15 0.17 1.48 16 17 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 18 C -0.53 -14.09 9.11 -34.44 -0.31 -14.40 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 22 Si 0.90 20.63 29.54 -169.99 -5.02 15.60 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 26 C -0.12 -1.09 6.76 -25.82 -0.17 -1.27 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.43 7.34 -51.93 -0.38 0.05 16 30 H 0.06 0.47 7.96 -51.92 -0.41 0.06 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.64 8.10 -51.92 -0.42 0.22 16 34 H 0.10 1.09 7.41 -51.93 -0.38 0.70 16 35 H 0.12 1.03 7.66 -51.93 -0.40 0.63 16 36 H 0.42 5.67 8.05 -40.82 -0.33 5.34 16 37 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 38 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.14 1.97 6.44 -52.49 -0.34 1.63 16 40 H 0.05 0.98 7.69 -51.93 -0.40 0.58 16 41 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.09 0.89 7.93 -51.93 -0.41 0.48 16 46 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 379.62 15.07 5.72 5.72 Total: -1.00 -31.78 379.62 -9.10 -40.88 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.22 Total: 3.33 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -3.05 Total: -8.91 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.58 Total: -42.16 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.11 Total: -14.47 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.78 -9.10 -40.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351820993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.287 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds